Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0013021

Physical Location & Seq

Genomic Coordinates Forward (+)

28638746 .. 28639648

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1198600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCAGCTCTATAGGAAGACCACCGCCGGCTCCTTCCTCCTCACACTTACCATTCTCACCACCCTCACCTATGCGCATAACATCACGCGCCTCCTCGCGAAGCATTCCGAATTCTCTACCTTCAACCACTACCTCACCCTAACCCACCTCGCCGCTGATATCAACGAGCGCACCATCATCACCATCTGTGCCATCGACAACTCCGCCATATCGGCCTTTCTTTCCAAACACCTTTCCATCTACTCTATCAAAAACATTCTCTCCCTCCATGTCTTCCTCGACTACTTCAGTGCCAAGAAGCTCCACCAAATCACCAACGGCACCGCACTTGTCGCCACCATGTTTCAAGCCACCGGCAACGCCCCGGGCTCCTCCGGCCTTATCAACATCACCGACTTAAAGGGTGGAAAGGTCGGTTTCACCCCCAAGGACAACGACAGTACCATCCCCTCCCATTTCATCAAAGCCGTCAAAGAGGTTCCGTACAATATCTCCATCATCCAGATCAGCACCGTCCTCCCCAACCAGGCCACTGAGGTCCCAACCCCGACCCTCACGGAGCTGAACATCATAGGAATCATGTCCGGCCACGGCTGTAAGGTCTTCACCGACAAGCTCCTCGCCAACTTCGACGATTTCAAGACTTACGATGACAATGTCGACGGTTGGCTGACCCTTTTTTGTTTGATGGACGACGTATTCAAGGCCTTCTTACCGAAGTTCAAAAACCTGATTGTGGCCGGGAAGGCAGCGGTGCTTGAGTACCACGGCATTCGGGTTTACCAGTCAATGTCAATGTTGAGGTCCAACAATGGCCTGATGAACACTCTATTGTGCCTTGGCCCGTTTGTTAATGCGGAAACGAAATTCAGATTACAATCTCACCAAATCACACTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0022622 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

301

Amino Acids

33.2

Weight (kDa)

8.77

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55730 AT5G55730
fragaria_vesca	FvH4_3g29120
malus_domestica	MD03G1179200.v1.1 MD11G1198600.v1.1
prunus_persica	Prupe.4G244100_v2.0.a1
pyrus_communis	pycom03g13520
rosa_chinensis	RchiOBHm_Chr5g0051361 RchiOBHm_Chr5g0053441
rosa_laevigata	RLG00000034881
rosa_multiflora	Rmu_sc0001054.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027000
rosa_rugosa	Rorug05G0279900
rosa_samantha	Rh5AG351000 Rh5BG363300 Rh5CG387700 Rh5DG377900
rosa_wichuraiana	Rw5G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	2 cut(s)	88, 98
AciI	CCGC	6 cut(s)	24, 153, 204, 324, 752, 857
AcoI	YGGCCR	2 cut(s)	586, 738
AcsI	RAATTY	2 cut(s)	110, 866
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	3 cut(s)	442, 485, 764
AfiI	CCNNNNNNNGG	2 cut(s)	526, 736
AgsI	TTSAA	5 cut(s)	124, 347, 640, 703, 724
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	4 cut(s)	7, 301, 562, 616
AluI	AGCT	4 cut(s)	7, 301, 562, 616
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	8 cut(s)	213, 376, 528, 586, 705, 738, 814, 841
ApeKI	GCWGC	2 cut(s)	4, 749
ApoI	RAATTY	2 cut(s)	110, 866
AspLEI	GCGC	3 cut(s)	76, 90, 171
AspS9I	GGNCC	3 cut(s)	538, 804, 842
AsuC2I	CCSGG	3 cut(s)	365, 366, 742
AsuHPI	GGTGA	9 cut(s)	49, 58, 127, 172, 304, 382, 412, 598, 875
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	538, 804
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	371
BbsI	GAAGAC	3 cut(s)	23, 265, 595
BbvI	GCAGC	2 cut(s)	16, 761
BccI	CCATC	7 cut(s)	182, 191, 200, 245, 452, 503, 682
BceAI	ACGGC	4 cut(s)	334, 452, 607, 784
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	3 cut(s)	365, 366, 742
BfmI	CTRYAG	1 cut(s)	10
BglI	GCCNNNNNGGC	2 cut(s)	212, 746
BisI	GCNGC	3 cut(s)	5, 153, 750
BlsI	GCNGC	3 cut(s)	6, 154, 751
Bme1390I	CCNGG	4 cut(s)	365, 366, 527, 742
Bme18I	GGWCC	2 cut(s)	538, 804
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	538, 804, 842
BmiI	GGNNCC	5 cut(s)	31, 322, 370, 480, 540
BmrFI	CCNGG	4 cut(s)	365, 366, 527, 742
BpiI	GAAGAC	3 cut(s)	23, 265, 595
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	3 cut(s)	365, 366, 742
BsaBI	GATNNNNATC	1 cut(s)	877
BsaJI	CCNNGG	6 cut(s)	363, 364, 426, 589, 766, 838
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 736
Bse118I	RCCGGY	2 cut(s)	26, 353
Bse1I	ACTGG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	877
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	6 cut(s)	363, 364, 426, 589, 766, 838
BseGI	GGATG	2 cut(s)	444, 498
BseJI	GATNNNNATC	1 cut(s)	877
BseLI	CCNNNNNNNGG	2 cut(s)	526, 736
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	4 cut(s)	29, 83, 361, 608
BseXI	GCAGC	2 cut(s)	16, 761
Bsh1236I	CGCG	2 cut(s)	88, 98
BshFI	GGCC	8 cut(s)	215, 378, 530, 588, 707, 740, 816, 843
BshNI	GGYRCC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	6 cut(s)	27, 354, 365, 375, 585, 741
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	526, 736
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	2 cut(s)	103, 771
BsnI	GGCC	8 cut(s)	215, 378, 530, 588, 707, 740, 816, 843
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	504
Bsp68I	TCGCGA	1 cut(s)	98
BspACI	CCGC	6 cut(s)	24, 153, 204, 324, 752, 857
BspANI	GGCC	8 cut(s)	215, 378, 530, 588, 707, 740, 816, 843
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	2 cut(s)	88, 98
BspLI	GGNNCC	5 cut(s)	31, 322, 370, 480, 540
BspT107I	GGYRCC	1 cut(s)	320
BsrFI	RCCGGY	2 cut(s)	26, 353
BsrI	ACTGG	1 cut(s)	784
BssAI	RCCGGY	2 cut(s)	26, 353
BssECI	CCNNGG	6 cut(s)	363, 364, 426, 589, 766, 838
BssMI	GATC	1 cut(s)	504
BssT1I	CCWWGG	2 cut(s)	426, 838
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	3 cut(s)	440, 514, 665
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	534, 896
BstDSI	CCRYGG	2 cut(s)	589, 766
BstF5I	GGATG	2 cut(s)	444, 498
BstFNI	CGCG	2 cut(s)	88, 98
BstHHI	GCGC	3 cut(s)	76, 90, 171
BstKTI	GATC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 332, 375, 746
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	4 cut(s)	363, 364, 525, 740
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	2 cut(s)	88, 98
BstV1I	GCAGC	2 cut(s)	16, 761
BstV2I	GAAGAC	3 cut(s)	23, 265, 595
BsuRI	GGCC	8 cut(s)	215, 378, 530, 588, 707, 740, 816, 843
BtgI	CCRYGG	2 cut(s)	589, 766
BtsCI	GGATG	2 cut(s)	444, 498
BtsIMutI	CAGTG	2 cut(s)	295, 531
BtuMI	TCGCGA	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	3 cut(s)	76, 90, 171
Cfr10I	RCCGGY	2 cut(s)	26, 353
Cfr13I	GGNCC	3 cut(s)	538, 804, 842
Cfr9I	CCCGGG	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	441, 484, 763
CviAII	CATG	3 cut(s)	269, 340, 580
CviQI	GTAC	3 cut(s)	441, 484, 763
DdeI	CTNAG	2 cut(s)	534, 896
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
EaeI	YGGCCR	2 cut(s)	586, 738
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	426, 838
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	371
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	538, 804
Eco57I	CTGAAG	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	525
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	426, 838
EcoT38I	GRGCYC	1 cut(s)	371
ErhI	CCWWGG	2 cut(s)	426, 838
FaeI	CATG	3 cut(s)	272, 343, 583
FaiI	YATR	8 cut(s)	12, 72, 78, 209, 270, 341, 572, 581
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	3 cut(s)	268, 339, 579
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	3 cut(s)	5, 153, 750
FokI	GGATG	2 cut(s)	431, 485
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	3 cut(s)	5, 153, 750
FspAI	RTGCGCAY	1 cut(s)	75
FspI	TGCGCA	1 cut(s)	75
GlaI	GCGC	3 cut(s)	75, 89, 170
GluI	GCNGC	3 cut(s)	5, 153, 750
HaeIII	GGCC	8 cut(s)	215, 378, 530, 588, 707, 740, 816, 843
HapII	CCGG	6 cut(s)	27, 354, 365, 375, 585, 741
HhaI	GCGC	3 cut(s)	76, 90, 171
Hin1II	CATG	3 cut(s)	272, 343, 583
Hin6I	GCGC	3 cut(s)	74, 88, 169
HinP1I	GCGC	3 cut(s)	74, 88, 169
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	1 cut(s)	576
HpaII	CCGG	6 cut(s)	27, 354, 365, 375, 585, 741
HphI	GGTGA	9 cut(s)	49, 58, 127, 172, 304, 382, 412, 598, 875
Hpy166II	GTNNAC	2 cut(s)	661, 781
Hpy188I	TCNGA	2 cut(s)	109, 872
Hpy188III	TCNNGA	3 cut(s)	97, 502, 640
Hpy8I	GTNNAC	2 cut(s)	661, 781
Hpy99I	CGWCG	3 cut(s)	635, 665, 698
HpyAV	CCTTC	4 cut(s)	43, 130, 718, 739
HpyCH4III	ACNGT	3 cut(s)	440, 514, 665
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 332, 375, 746
HpyF3I	CTNAG	2 cut(s)	534, 896
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	3 cut(s)	272, 343, 583
HspAI	GCGC	3 cut(s)	74, 88, 169
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	5 cut(s)	35, 306, 374, 559, 621
Lsp1109I	GCAGC	2 cut(s)	16, 761
MaeII	ACGT	1 cut(s)	696
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	3 cut(s)	28, 265, 595
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	2 cut(s)	110, 866
MmeI	TCCRAC	1 cut(s)	831
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	2 cut(s)	398, 852
MspA1I	CMGCKG	2 cut(s)	155, 752
MspI	CCGG	6 cut(s)	27, 354, 365, 375, 585, 741
MspR9I	CCNGG	4 cut(s)	365, 366, 527, 742
Mva1269I	GAATGC	2 cut(s)	103, 771
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	2 cut(s)	88, 98
MwoI	GCNNNNNNNGC	4 cut(s)	212, 332, 375, 746
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	3 cut(s)	365, 366, 742
NdeII	GATC	1 cut(s)	504
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	272, 343, 583
NlaIV	GGNNCC	5 cut(s)	31, 322, 370, 480, 540
NruI	TCGCGA	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	2 cut(s)	103, 771
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	576
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	3 cut(s)	6, 154, 751
PpuMI	RGGWCCY	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	5 cut(s)	31, 322, 370, 480, 540
PspPI	GGNCC	3 cut(s)	538, 804, 842
PspPPI	RGGWCCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	656
RruI	TCGCGA	1 cut(s)	98
RsaI	GTAC	3 cut(s)	442, 485, 764
RsaNI	GTAC	3 cut(s)	441, 484, 763
SalI	GTCGAC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	398, 852
SatI	GCNGC	3 cut(s)	5, 153, 750
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	3 cut(s)	538, 804, 842
ScrFI	CCNGG	4 cut(s)	365, 366, 527, 742
SduI	GDGCHC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	538, 804
SmaI	CCCGGG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	2 cut(s)	110, 866
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	6 cut(s)	24, 153, 204, 324, 752, 857
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	4 cut(s)	363, 364, 525, 740
StyI	CCWWGG	2 cut(s)	426, 838
TaaI	ACNGT	3 cut(s)	440, 514, 665
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	4 cut(s)	195, 279, 630, 660
TasI	AATT	2 cut(s)	110, 866
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	576
Tru1I	TTAA	2 cut(s)	398, 852
Tru9I	TTAA	2 cut(s)	398, 852
TscAI	CASTG	2 cut(s)	295, 538
TseI	GCWGC	2 cut(s)	4, 749
TspDTI	ATGAA	2 cut(s)	448, 836
TspGWI	ACGGA	2 cut(s)	471, 572
TspMI	CCCGGG	1 cut(s)	364
TspRI	CASTG	2 cut(s)	295, 538
Tth111I	GACNNNGTC	1 cut(s)	656
VpaK11BI	GGWCC	2 cut(s)	538, 804
XapI	RAATTY	2 cut(s)	110, 866
XmaI	CCCGGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.