Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013021

Physical Location & Seq

Genomic Coordinates Reverse (-)

52546922 .. 52547594

Gene Structure 673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAACACTTTGGCCACCAACGGAGCGGAGAAGTACGACTTCACCGTCCAAAACGACGGTCAGGCGGTGACCCTCAAGAACAAGCTAGTGACGGCCAAGATCATCGGCACGCTAATCGATGAGCAGCCCCTTGCTATATATACTATAAACAAGGTTTTGACGCCCAAGGAGCTGTACAAGGGAGCGACTCCAACTCCGGCGCCGGCTCCGGCACCAGAGAAAGCCGCCGACGCTCCAAGAGTTCCAAGGAGGCGCCGTCCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0022622 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

88

Amino Acids

9.6

Weight (kDa)

9.91

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55730 AT5G55730
fragaria_vesca	FvH4_3g29120
malus_domestica	MD03G1179200.v1.1 MD11G1198600.v1.1
prunus_persica	Prupe.4G244100_v2.0.a1
pyrus_communis	pycom03g13520
rosa_chinensis	RchiOBHm_Chr5g0051361 RchiOBHm_Chr5g0053441
rosa_laevigata	RLG00000034881
rosa_multiflora	Rmu_sc0001054.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027000
rosa_rugosa	Rorug05G0279900
rosa_samantha	Rh5AG351000 Rh5BG363300 Rh5CG387700 Rh5DG377900
rosa_wichuraiana	Rw5G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB1I	GGYRCC	3 cut(s)	199, 211, 252
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	3 cut(s)	26, 65, 225
AcoI	YGGCCR	2 cut(s)	12, 93
AcyI	GRCGYC	3 cut(s)	161, 200, 253
AfaI	GTAC	2 cut(s)	35, 176
AluBI	AGCT	2 cut(s)	85, 172
AluI	AGCT	2 cut(s)	85, 172
AoxI	GGCC	2 cut(s)	12, 93
ApeKI	GCWGC	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspLEI	GCGC	2 cut(s)	202, 255
AsuHPI	GGTGA	2 cut(s)	34, 79
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	3 cut(s)	199, 211, 252
BbvI	GCAGC	1 cut(s)	136
BceAI	ACGGC	2 cut(s)	108, 240
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	2 cut(s)	203, 256
BisI	GCNGC	2 cut(s)	125, 225
BlsI	GCNGC	2 cut(s)	126, 226
BmiI	GGNNCC	4 cut(s)	201, 207, 213, 254
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	117
BsaHI	GRCGYC	3 cut(s)	161, 200, 253
BsaJI	CCNNGG	2 cut(s)	165, 245
BsaXI	ACNNNNNCTCC	3 cut(s)	178, 208, 241
Bse118I	RCCGGY	1 cut(s)	202
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	165, 245
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	2 cut(s)	14, 95
BshNI	GGYRCC	3 cut(s)	199, 211, 252
BshVI	ATCGAT	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	197, 203, 209
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	14, 95
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	3 cut(s)	26, 65, 225
BspANI	GGCC	2 cut(s)	14, 95
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	201, 207, 213, 254
BspT107I	GGYRCC	3 cut(s)	199, 211, 252
BsrBI	CCGCTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	165, 245
BssMI	GATC	1 cut(s)	99
BssNI	GRCGYC	3 cut(s)	161, 200, 253
BssT1I	CCWWGG	2 cut(s)	165, 245
Bst4CI	ACNGT	2 cut(s)	46, 59
BstACI	GRCGYC	3 cut(s)	161, 200, 253
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	110, 204
BstEII	GGTNACC	1 cut(s)	67
BstH2I	RGCGCY	2 cut(s)	203, 256
BstHHI	GCGC	2 cut(s)	202, 255
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 230
BstPI	GGTNACC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	14, 95
BsuTUI	ATCGAT	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	110, 204
CfoI	GCGC	2 cut(s)	202, 255
Cfr10I	RCCGGY	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	2 cut(s)	169, 239
Csp6I	GTAC	2 cut(s)	34, 175
CviJI	RGCY	7 cut(s)	14, 85, 95, 127, 172, 206, 224
CviKI_1	RGCY	7 cut(s)	14, 85, 95, 127, 172, 206, 224
CviQI	GTAC	2 cut(s)	34, 175
DinI	GGCGCC	2 cut(s)	201, 254
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	12, 93
Eco130I	CCWWGG	2 cut(s)	165, 245
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	165, 245
EgeI	GGCGCC	2 cut(s)	201, 254
EheI	GGCGCC	2 cut(s)	201, 254
ErhI	CCWWGG	2 cut(s)	165, 245
FaiI	YATR	4 cut(s)	137, 139, 141, 146
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	125, 225
Fsp4HI	GCNGC	2 cut(s)	125, 225
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	201, 254
GluI	GCNGC	2 cut(s)	125, 225
HaeII	RGCGCY	2 cut(s)	203, 256
HaeIII	GGCC	2 cut(s)	14, 95
HapII	CCGG	3 cut(s)	197, 203, 209
HgaI	GACGC	2 cut(s)	169, 239
HhaI	GCGC	2 cut(s)	202, 255
Hin1I	GRCGYC	3 cut(s)	161, 200, 253
Hin6I	GCGC	2 cut(s)	200, 253
HinP1I	GCGC	2 cut(s)	200, 253
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	3 cut(s)	197, 203, 209
HphI	GGTGA	2 cut(s)	34, 79
Hpy188III	TCNNGA	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	59, 233
HpyCH4III	ACNGT	2 cut(s)	46, 59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 230
Hsp92I	GRCGYC	3 cut(s)	161, 200, 253
HspAI	GCGC	2 cut(s)	200, 253
KasI	GGCGCC	2 cut(s)	199, 252
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	5 cut(s)	23, 169, 182, 211, 238
LpnPI	CCDG	5 cut(s)	47, 210, 216, 222, 228
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	67, 88
MalI	GATC	1 cut(s)	101
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	14
Mly113I	GGCGCC	2 cut(s)	200, 253
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	2 cut(s)	83, 243
Mox20I	TGGCCA	1 cut(s)	14
MroNI	GCCGGC	1 cut(s)	202
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	3 cut(s)	197, 203, 209
MwoI	GCNNNNNNNGC	2 cut(s)	169, 230
NaeI	GCCGGC	1 cut(s)	204
NarI	GGCGCC	2 cut(s)	200, 253
NdeII	GATC	1 cut(s)	99
NgoMIV	GCCGGC	1 cut(s)	202
NlaIV	GGNNCC	4 cut(s)	201, 207, 213, 254
NmuCI	GTSAC	2 cut(s)	67, 88
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	126, 226
PleI	GAGTC	1 cut(s)	181
PluTI	GGCGCC	2 cut(s)	203, 256
PpsI	GAGTC	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	201, 207, 213, 254
RsaI	GTAC	2 cut(s)	35, 176
RsaNI	GTAC	2 cut(s)	34, 175
SatI	GCNGC	2 cut(s)	125, 225
Sau3AI	GATC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	181
SetI	ASST	3 cut(s)	87, 156, 174
SfoI	GGCGCC	2 cut(s)	201, 254
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	3 cut(s)	26, 65, 225
SspDI	GGCGCC	2 cut(s)	199, 252
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	165, 245
TaaI	ACNGT	2 cut(s)	46, 59
TaqI	TCGA	1 cut(s)	117
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	67, 88
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	2 cut(s)	67, 88
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	36
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.