FvH4_3g29120

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
22228754 .. 22230540
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29120.t1

Sequence Viewer

Length: 1224 bp
ATGCAGCTCCGTCCGGCAACCTCCGCCGGCGCGTTGGTCCTCTCCGTCTTCCTCCTCTTCTCCTTCGCCCACGCGCACAACATCACGCACCTGCTGGCCAAGCACCCGGAGTTCTCCACCTTCAACCGCTACCTGAGCCTGACCCACCTGGCCGCCGACATCAACGACCGCACCACCATCACCGTCTGCGCCGTCGACAACTCCGCCATGTCGGCCCTCCTCGCCAAGCACCTCTCCATCTACTCCATCAAGAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTTGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACCATGTTCCAGGCCACCGGCTCCGCCCCCGGCTCCTCCGGCTTCGTCAACATCACCGACCTCAAGGGCGGAAAGGTCGGTTTTACCCCCGAGGACAACGACGGCTCCTTCGCCGCGCACTTCGTCAAGTCCGTCGAGGAGCTCCCTTACAACATCTCCGTCATCCACATCAGCGCCGTCCTCCCCTCGCCCGCCGCCGAGGCTCCCACTCCCGGCCCCGCCGAGGTCAACCTCACCGGAATCATGTCCGCCCACGGCTGCAAGGTCTTCGCCGAGACGCTCCTCGCCAACCCCGACGCGTCCAAGACCTACGACGATGCCGTCGACGGCGGAATGACCGTGTTCTGCCCGGGCGACGACGCGTTCAAGGCGTTCCTGCCGAAATACAAGAACCTCTCGGCTCCCGGAAAAGCTGCATTGCTCGAGTACCACGCCGTTCCGGTGTACCAGTCCATGTCGATGTTGAAGTCCAACAATGGGCTGATGAACACTTTGGCCACCAACGGAGCGGAGAAGTACGACTTCACCGTCCAAAACGACGGTCAGGCCGTCACACTTAAGAACAAGCTAGTGACGGCCAAGATCACCGGCACGCTTATCGACGAGCAGCCCCTTGCTATATACACTATAAACAAGGTTTTGACGCCCAAGGAGCTCTATAAGGGGGAAGCTCCAACTCCGGCGCCGGCTCCAGCACCAGAGAAATCCGCCGCAGACGCGCCTAAGAGTTCTGATGAAGCTACTTCCCCGGACGCAGATTCGCCGGCTGACTCGCCGGACGACGACCCGGCTGATCAGACTGCCGATGACAATGGAGCCGTTGCGTTGGGAAGAGTGGGGTTCGGGGGTCTGATTCTCAGTGTGTGCATTGGGTTTTCACTATTGTAA

Protein Analysis

408

Amino Acids

42.72

Weight (kDa)

5.31

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 211 - 328 5.4e-15 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013021)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 99
AasI GACNNNNNNGTC 2 cut(s) 656, 863
Acc36I ACCTGC 1 cut(s) 99
AccB1I GGYRCC 3 cut(s) 290, 320, 1018
AccBSI CCGCTC 1 cut(s) 845
AccI GTMKAC 2 cut(s) 195, 660
AccII CGCG 6 cut(s) 32, 74, 452, 635, 698, 1055
AcoI YGGCCR 4 cut(s) 96, 150, 831, 912
AcyI GRCGYC 3 cut(s) 291, 980, 1019
AfaI GTAC 3 cut(s) 764, 782, 854
AfiI CCNNNNNNNGG 3 cut(s) 548, 559, 813
AflII CTTAAG 1 cut(s) 893
AflIII ACRYGT 2 cut(s) 633, 696
AgsI TTSAA 3 cut(s) 124, 703, 802
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 147, 345
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 8 cut(s) 7, 301, 478, 749, 904, 991, 1007, 1076
AluI AGCT 8 cut(s) 7, 301, 478, 749, 904, 991, 1007, 1076
Alw21I GWGCWC 2 cut(s) 480, 993
Alw26I GTCTC 1 cut(s) 605
Ama87I CYCGRG 3 cut(s) 425, 685, 758
AoxI GGCC 8 cut(s) 96, 150, 213, 348, 550, 831, 882, 912
ApeKI GCWGC 4 cut(s) 4, 594, 749, 943
ArsI GACNNNNNNTTYG 4 cut(s) 428, 460, 862, 894
AspLEI GCGC 8 cut(s) 32, 76, 191, 293, 454, 512, 1021, 1057
AspS9I GGNCC 3 cut(s) 37, 214, 551
AsuC2I CCSGG 8 cut(s) 107, 366, 549, 686, 687, 741, 1085, 1124
AsuHPI GGTGA 6 cut(s) 172, 304, 382, 562, 853, 913
AvaI CYCGRG 3 cut(s) 425, 685, 758
AvaII GGWCC 1 cut(s) 37
BalI TGGCCA 2 cut(s) 98, 833
BanI GGYRCC 3 cut(s) 290, 320, 1018
BanII GRGCYC 2 cut(s) 480, 993
BbsI GAAGAC 2 cut(s) 40, 595
Bbv12I GWGCWC 2 cut(s) 480, 993
BbvI GCAGC 4 cut(s) 16, 581, 736, 955
BccI CCATC 3 cut(s) 185, 245, 254
BcgI CGANNNNNNTGC 6 cut(s) 310, 344, 586, 620, 916, 950
BciT130I CCWGG 2 cut(s) 149, 347
BclI TGATCA 1 cut(s) 1129
BcnI CCSGG 8 cut(s) 107, 366, 549, 686, 687, 741, 1085, 1124
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 1 cut(s) 905
BfoI RGCGCY 3 cut(s) 294, 513, 1022
BfrI CTTAAG 1 cut(s) 893
BfuAI ACCTGC 1 cut(s) 99
BglI GCCNNNNNGGC 2 cut(s) 212, 536
BisI GCNGC 9 cut(s) 5, 153, 333, 450, 531, 595, 750, 944, 1047
BlsI GCNGC 9 cut(s) 6, 154, 334, 451, 532, 596, 751, 945, 1048
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 3 cut(s) 425, 685, 758
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 37, 214, 551
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 2 cut(s) 40, 595
BpmI CTGGAG 1 cut(s) 1011
Bpu10I CCTNAGC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 8 cut(s) 107, 366, 549, 686, 687, 741, 1085, 1124
BsaHI GRCGYC 3 cut(s) 291, 980, 1019
BsaJI CCNNGG 8 cut(s) 364, 426, 534, 558, 589, 685, 984, 1083
BsaWI WCCGGW 2 cut(s) 572, 775
BsaXI ACNNNNNCTCC 6 cut(s) 245, 275, 425, 455, 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 548, 559, 813
Bse118I RCCGGY 5 cut(s) 26, 353, 923, 1021, 1099
Bse1I ACTGG 1 cut(s) 784
Bse3DI GCAATG 1 cut(s) 752
BseBI CCWGG 2 cut(s) 149, 347
BseDI CCNNGG 8 cut(s) 364, 426, 534, 558, 589, 685, 984, 1083
BseGI GGATG 2 cut(s) 255, 498
BseLI CCNNNNNNNGG 3 cut(s) 548, 559, 813
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 2 cut(s) 125, 1207
BseNI ACTGG 1 cut(s) 784
BseRI GAGGAG 6 cut(s) 44, 209, 266, 361, 488, 608
BseXI GCAGC 4 cut(s) 16, 581, 736, 955
Bsh1236I CGCG 6 cut(s) 32, 74, 452, 635, 698, 1055
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 8 cut(s) 98, 152, 215, 350, 552, 833, 884, 914
BshNI GGYRCC 3 cut(s) 290, 320, 1018
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 480, 993
BsiHKCI CYCGRG 3 cut(s) 425, 685, 758
BslI CCNNNNNNNGG 3 cut(s) 548, 559, 813
BsmAI GTCTC 1 cut(s) 605
BsmBI CGTCTC 1 cut(s) 605
BsnI GGCC 8 cut(s) 98, 152, 215, 350, 552, 833, 884, 914
BsoBI CYCGRG 3 cut(s) 425, 685, 758
Bsp1286I GDGCHC 2 cut(s) 480, 993
Bsp143I GATC 3 cut(s) 309, 918, 1129
BspANI GGCC 8 cut(s) 98, 152, 215, 350, 552, 833, 884, 914
BspCNI CTCAG 2 cut(s) 126, 1206
BspFNI CGCG 6 cut(s) 32, 74, 452, 635, 698, 1055
BspMI ACCTGC 1 cut(s) 99
BspT107I GGYRCC 3 cut(s) 290, 320, 1018
BspTI CTTAAG 1 cut(s) 893
BsrBI CCGCTC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 752
BsrFI RCCGGY 5 cut(s) 26, 353, 923, 1021, 1099
BsrI ACTGG 1 cut(s) 784
BssAI RCCGGY 5 cut(s) 26, 353, 923, 1021, 1099
BssECI CCNNGG 8 cut(s) 364, 426, 534, 558, 589, 685, 984, 1083
BssMI GATC 3 cut(s) 309, 918, 1129
BssNI GRCGYC 3 cut(s) 291, 980, 1019
BssT1I CCWWGG 1 cut(s) 984
Bst2UI CCWGG 2 cut(s) 149, 347
Bst4CI ACNGT 4 cut(s) 184, 676, 865, 878
Bst6I CTCTTC 2 cut(s) 62, 1162
BstACI GRCGYC 3 cut(s) 291, 980, 1019
BstAFI CTTAAG 1 cut(s) 893
BstC8I GCNNGC 6 cut(s) 28, 96, 528, 929, 1023, 1101
BstDEI CTNAG 3 cut(s) 134, 1059, 1193
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 2 cut(s) 255, 498
BstFNI CGCG 6 cut(s) 32, 74, 452, 635, 698, 1055
BstH2I RGCGCY 3 cut(s) 294, 513, 1022
BstHHI GCGC 8 cut(s) 32, 76, 191, 293, 454, 512, 1021, 1057
BstKTI GATC 3 cut(s) 312, 921, 1132
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 3 cut(s) 309, 918, 1129
BstMCI CGRYCG 1 cut(s) 169
BstNI CCWGG 2 cut(s) 149, 347
BstUI CGCG 6 cut(s) 32, 74, 452, 635, 698, 1055
BstV1I GCAGC 4 cut(s) 16, 581, 736, 955
BstV2I GAAGAC 2 cut(s) 40, 595
BsuRI GGCC 8 cut(s) 98, 152, 215, 350, 552, 833, 884, 914
BtgI CCRYGG 1 cut(s) 589
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 255, 498
BtsIMutI CAGTG 1 cut(s) 1201
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 6 cut(s) 28, 96, 528, 929, 1023, 1101
CfoI GCGC 8 cut(s) 32, 76, 191, 293, 454, 512, 1021, 1057
Cfr10I RCCGGY 5 cut(s) 26, 353, 923, 1021, 1099
Cfr13I GGNCC 3 cut(s) 37, 214, 551
Cfr9I CCCGGG 1 cut(s) 685
CseI GACGC 7 cut(s) 622, 624, 641, 704, 988, 1061, 1097
Csp6I GTAC 3 cut(s) 763, 781, 853
CviAII CATG 4 cut(s) 208, 340, 580, 790
CviQI GTAC 3 cut(s) 763, 781, 853
DdeI CTNAG 3 cut(s) 134, 1059, 1193
DinI GGCGCC 2 cut(s) 292, 1020
DpnI GATC 3 cut(s) 311, 920, 1131
DpnII GATC 3 cut(s) 309, 918, 1129
DrdI GACNNNNNNGTC 2 cut(s) 656, 863
DseDI GACNNNNNNGTC 2 cut(s) 656, 863
EaeI YGGCCR 4 cut(s) 96, 150, 831, 912
Eam1104I CTCTTC 2 cut(s) 62, 1162
EarI CTCTTC 2 cut(s) 62, 1162
EciI GGCGGA 7 cut(s) 13, 193, 349, 420, 574, 681, 1033
Ecl136II GAGCTC 2 cut(s) 478, 991
Eco130I CCWWGG 1 cut(s) 984
Eco24I GRGCYC 2 cut(s) 480, 993
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 2 cut(s) 478, 991
Eco88I CYCGRG 3 cut(s) 425, 685, 758
EcoICRI GAGCTC 2 cut(s) 478, 991
EcoRII CCWGG 2 cut(s) 147, 345
EcoT14I CCWWGG 1 cut(s) 984
EcoT38I GRGCYC 2 cut(s) 480, 993
EgeI GGCGCC 2 cut(s) 292, 1020
EheI GGCGCC 2 cut(s) 292, 1020
ErhI CCWWGG 1 cut(s) 984
Esp3I CGTCTC 1 cut(s) 605
FaeI CATG 4 cut(s) 211, 343, 583, 793
FaiI YATR 8 cut(s) 209, 341, 581, 791, 956, 958, 965, 996
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FatI CATG 4 cut(s) 207, 339, 579, 789
FauI CCCGC 2 cut(s) 535, 562
FbaI TGATCA 1 cut(s) 1129
FblI GTMKAC 2 cut(s) 195, 660
Fnu4HI GCNGC 9 cut(s) 5, 153, 333, 450, 531, 595, 750, 944, 1047
FokI GGATG 2 cut(s) 242, 485
FriOI GRGCYC 2 cut(s) 480, 993
Fsp4HI GCNGC 9 cut(s) 5, 153, 333, 450, 531, 595, 750, 944, 1047
FspBI CTAG 1 cut(s) 905
GlaI GCGC 8 cut(s) 31, 75, 190, 292, 453, 511, 1020, 1056
GluI GCNGC 9 cut(s) 5, 153, 333, 450, 531, 595, 750, 944, 1047
GsuI CTGGAG 1 cut(s) 1011
HaeII RGCGCY 3 cut(s) 294, 513, 1022
HaeIII GGCC 8 cut(s) 98, 152, 215, 350, 552, 833, 884, 914
HgaI GACGC 7 cut(s) 622, 624, 641, 704, 988, 1061, 1097
HhaI GCGC 8 cut(s) 32, 76, 191, 293, 454, 512, 1021, 1057
Hin1I GRCGYC 3 cut(s) 291, 980, 1019
Hin1II CATG 4 cut(s) 211, 343, 583, 793
Hin6I GCGC 8 cut(s) 30, 74, 189, 291, 452, 510, 1019, 1055
HinP1I GCGC 8 cut(s) 30, 74, 189, 291, 452, 510, 1019, 1055
HincII GTYRAC 4 cut(s) 196, 385, 565, 661
HindII GTYRAC 4 cut(s) 196, 385, 565, 661
HinfI GANTC 4 cut(s) 576, 1094, 1106, 1189
HphI GGTGA 6 cut(s) 172, 304, 382, 562, 853, 913
Hpy166II GTNNAC 5 cut(s) 196, 385, 565, 661, 781
Hpy188I TCNGA 3 cut(s) 1069, 1134, 1188
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 5 cut(s) 196, 385, 565, 661, 781
HpyAV CCTTC 3 cut(s) 73, 130, 454
HpyCH4III ACNGT 4 cut(s) 184, 676, 865, 878
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 4, 597, 752, 1203
HpyF3I CTNAG 3 cut(s) 134, 1059, 1193
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 3 cut(s) 291, 980, 1019
Hsp92II CATG 4 cut(s) 211, 343, 583, 793
HspAI GCGC 8 cut(s) 30, 74, 189, 291, 452, 510, 1019, 1055
KasI GGCGCC 2 cut(s) 290, 1018
KroI GCCGGC 3 cut(s) 26, 1021, 1099
KroNI GCCGGC 3 cut(s) 28, 1023, 1101
Ksp22I TGATCA 1 cut(s) 1129
Kzo9I GATC 3 cut(s) 309, 918, 1129
Lsp1109I GCAGC 4 cut(s) 16, 581, 736, 955
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 905
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 886, 907
MalI GATC 3 cut(s) 311, 920, 1131
MbiI CCGCTC 1 cut(s) 845
MboI GATC 3 cut(s) 309, 918, 1129
MboII GAAGA 4 cut(s) 40, 49, 595, 1179
MhlI GDGCHC 2 cut(s) 480, 993
MlsI TGGCCA 2 cut(s) 98, 833
MluI ACGCGT 2 cut(s) 633, 696
MluNI TGGCCA 2 cut(s) 98, 833
Mly113I GGCGCC 2 cut(s) 291, 1019
MlyI GAGTC 1 cut(s) 1100
MmeI TCCRAC 2 cut(s) 831, 1034
Mox20I TGGCCA 2 cut(s) 98, 833
MreI CGCCGGCG 1 cut(s) 26
MroNI GCCGGC 3 cut(s) 26, 1021, 1099
MscI TGGCCA 2 cut(s) 98, 833
MseI TTAA 1 cut(s) 894
MslI CAYNNNNRTG 1 cut(s) 794
Msp20I TGGCCA 2 cut(s) 98, 833
MspCI CTTAAG 1 cut(s) 893
MvaI CCWGG 2 cut(s) 149, 347
MvnI CGCG 6 cut(s) 32, 74, 452, 635, 698, 1055
NaeI GCCGGC 3 cut(s) 28, 1023, 1101
NarI GGCGCC 2 cut(s) 291, 1019
NciI CCSGG 8 cut(s) 107, 366, 549, 686, 687, 741, 1085, 1124
NdeII GATC 3 cut(s) 309, 918, 1129
NgoMIV GCCGGC 3 cut(s) 26, 1021, 1099
NlaIII CATG 4 cut(s) 211, 343, 583, 793
NmeAIII GCCGAG 4 cut(s) 559, 583, 634, 713
NmuCI GTSAC 2 cut(s) 886, 907
PaeR7I CTCGAG 1 cut(s) 758
PaqCI CACCTGC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 7 cut(s) 276, 465, 627, 654, 657, 861, 882
PdiI GCCGGC 3 cut(s) 28, 1023, 1101
PfeI GAWTC 3 cut(s) 576, 1094, 1189
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 9 cut(s) 6, 154, 334, 451, 532, 596, 751, 945, 1048
PleI GAGTC 1 cut(s) 1100
PluTI GGCGCC 2 cut(s) 294, 1022
PpsI GAGTC 1 cut(s) 1100
Psp124BI GAGCTC 2 cut(s) 480, 993
Psp6I CCWGG 2 cut(s) 147, 345
PspGI CCWGG 2 cut(s) 147, 345
PspPI GGNCC 3 cut(s) 37, 214, 551
PspXI VCTCGAGB 1 cut(s) 758
RsaI GTAC 3 cut(s) 764, 782, 854
RsaNI GTAC 3 cut(s) 763, 781, 853
RseI CAYNNNNRTG 1 cut(s) 794
SacI GAGCTC 2 cut(s) 480, 993
SalI GTCGAC 2 cut(s) 194, 659
SaqAI TTAA 1 cut(s) 894
SatI GCNGC 9 cut(s) 5, 153, 333, 450, 531, 595, 750, 944, 1047
Sau3AI GATC 3 cut(s) 309, 918, 1129
Sau96I GGNCC 3 cut(s) 37, 214, 551
SchI GAGTC 1 cut(s) 1100
SduI GDGCHC 2 cut(s) 480, 993
SfaNI GCATC 1 cut(s) 643
SfoI GGCGCC 2 cut(s) 292, 1020
Sfr274I CTCGAG 1 cut(s) 758
SgrAI CRCCGGYG 1 cut(s) 26
SgrDI CGTCGACG 1 cut(s) 659
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 758
SmaI CCCGGG 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 3 cut(s) 398, 758, 893
SmoI CTYRAG 3 cut(s) 398, 758, 893
SrfI GCCCGGGC 1 cut(s) 687
SspDI GGCGCC 2 cut(s) 290, 1018
SspMI CTAG 1 cut(s) 905
SstI GAGCTC 2 cut(s) 480, 993
StyI CCWWGG 1 cut(s) 984
TaaI ACNGT 4 cut(s) 184, 676, 865, 878
TaiI ACGT 1 cut(s) 273
TaqI TCGA 7 cut(s) 195, 279, 471, 660, 759, 794, 936
TauI GCSGC 5 cut(s) 155, 335, 452, 533, 1049
TfiI GAWTC 3 cut(s) 576, 1094, 1189
Tru1I TTAA 1 cut(s) 894
Tru9I TTAA 1 cut(s) 894
TscAI CASTG 1 cut(s) 1201
TseFI GTSAC 2 cut(s) 886, 907
TseI GCWGC 4 cut(s) 4, 594, 749, 943
Tsp45I GTSAC 2 cut(s) 886, 907
TspDTI ATGAA 2 cut(s) 836, 1086
TspGWI ACGGA 4 cut(s) 34, 457, 484, 855
TspMI CCCGGG 1 cut(s) 685
TspRI CASTG 1 cut(s) 1201
Vha464I CTTAAG 1 cut(s) 893
VpaK11BI GGWCC 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 758
XmaI CCCGGG 1 cut(s) 685
XmiI GTMKAC 2 cut(s) 195, 660
XspI CTAG 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.