AT5G55760

NAD-dependent protein deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013314
Physical Location & Seq
Forward (+)
22567222 .. 22571008
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55760.1

Sequence Viewer

Length: 1422 bp
ATGTCTTTAGGTTACGCAGAGAAATTATCCTTCATTGAAGATGTTGGTCAAGTCGGCATGGCTGAATTCTTCGACCCATCTCATCTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAAAAGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCTGATTTCCGAGGCCCCAAAGGAATTTGGACGTTACAGCGCGAGGGCAAAGATTTACCTAAAGCATCTCTGCCATTTCACCGTGCAATGCCGAGTATGACCCATATGGCTTTGGTTGAATTAGAAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGATGGCTTACATCTTCGATCTGGAATACCAAGAGAGAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGCCCATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAGACATCAAGAAAGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCTTGGATTGGGAGGATGCTTTGCCTCCAAAAGAAATTGATCCTGCGGAGAAGCACTGCAAAAAGGCTGATCTTGTACTCTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTCAAGTGTCTCAAAGGTGGAGGCAAGATCGTCATAGTTAATCTTCAGAAAACACCGAAAGACAAGAAAGCAAATGTAGTGATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAATCGCTCAACATGAAGATTCCTCCATATGTCAGAATTGATCTTTTCCAGATAATCCTAACTCAATCTATAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCGAGTGTTCATGGATTGACTTCTCAGTTACCATTCATCAAGTCTATTGAGGTTTCTTTCTCAGATAACCATAATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGAAACGAAACTTTTGATATATTCTTTAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCCACTCAACTTAGCCTCCCATTTGAATTCAAGATTTCAACAGAAGAGCATGTAGAGATTATTGACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCGGTAGAAGAATCCAGTTGCGGGCAAAGCGGTGTGGTTGAGAGAAGAGTGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTATGCTACGGTGACTAGTCTCAGGACTTACCATAGTCAACAATCTCTGCTTGCTAATGGAGACCTGAAATGGAAGCTGGAAGGTTCTGGAACATCCCGTAAACGCTCTAGAACCGGGAAGCGAAAATCGAAGGCTCTGGCAGAAGAAACCAAGGCATAG

Protein Analysis

473

Amino Acids

52.64

Weight (kDa)

8.54

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 87 - 216 2.5e-21 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55760
fragaria_vesca FvH4_3g29170 FvH4_3g29170
malus_domestica MD03G1179400.v1.1 MD11G1199100.v1.1
prunus_persica Prupe.4G243700_v2.0.a1 Prupe.4G243700_v2.0.a1
pyrus_communis pycom03g13540 pycom11g17170
rosa_chinensis RchiOBHm_Chr5g0053471
rosa_laevigata RLG00000034885
rosa_roxburghii Rroxscaffold_1G00026940
rosa_rugosa Rorug05G0280200
rosa_samantha Rh5AG351400 Rh5BG363600 Rh5DG378300 Rh7BG051900
rosa_wichuraiana Rw5G033230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 456
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 626
AccB7I CCANNNNNTGG 1 cut(s) 434
AccII CGCG 1 cut(s) 225
AciI CCGC 5 cut(s) 584, 858, 1184, 1203, 1212
AclWI GGATC 1 cut(s) 572
AcsI RAATTY 4 cut(s) 65, 207, 326, 1109
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 3 cut(s) 446, 615, 628
AfiI CCNNNNNNNGG 2 cut(s) 434, 1203
AgsI TTSAA 9 cut(s) 38, 104, 125, 168, 302, 509, 1109, 1114, 1122
AhlI ACTAGT 1 cut(s) 1277
AluBI AGCT 4 cut(s) 314, 388, 521, 1339
AluI AGCT 4 cut(s) 314, 388, 521, 1339
Alw26I GTCTC 6 cut(s) 399, 479, 677, 1087, 1286, 1317
AlwI GGATC 1 cut(s) 572
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 994
ApoI RAATTY 4 cut(s) 65, 207, 326, 1109
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 1 cut(s) 499
Asp718I GGTACC 1 cut(s) 626
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 197, 882
AsuC2I CCSGG 1 cut(s) 1378
AsuHPI GGTGA 2 cut(s) 254, 1285
AvaII GGWCC 1 cut(s) 882
BaeGI GKGCMC 1 cut(s) 428
BanI GGYRCC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 1006
BccI CCATC 3 cut(s) 85, 344, 436
BcnI CCSGG 1 cut(s) 1378
BcoDI GTCTC 6 cut(s) 399, 479, 677, 1087, 1286, 1317
BcuI ACTAGT 1 cut(s) 1277
BfaI CTAG 3 cut(s) 140, 1278, 1371
BfmI CTRYAG 1 cut(s) 1060
BfuAI ACCTGC 1 cut(s) 456
BisI GCNGC 1 cut(s) 995
BlsI GCNGC 1 cut(s) 996
Bme1390I CCNGG 1 cut(s) 1378
Bme18I GGWCC 1 cut(s) 882
BmgT120I GGNCC 2 cut(s) 197, 882
BmiI GGNNCC 3 cut(s) 199, 628, 884
BmrFI CCNGG 1 cut(s) 1378
BmsI GCATC 3 cut(s) 145, 257, 544
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 1 cut(s) 1378
BsaI GGTCTC 1 cut(s) 1317
BsaJI CCNNGG 2 cut(s) 193, 1413
BsaXI ACNNNNNCTCC 4 cut(s) 1067, 1083, 1097, 1113
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 1203
Bse1I ACTGG 3 cut(s) 157, 630, 1197
Bse3DI GCAATG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 193, 1413
BseGI GGATG 3 cut(s) 355, 559, 1355
BseLI CCNNNNNNNGG 2 cut(s) 434, 1203
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 4 cut(s) 932, 969, 1163, 1297
BseNI ACTGG 3 cut(s) 157, 630, 1197
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 1 cut(s) 1006
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 626
BsiSI CCGG 1 cut(s) 1377
BslI CCNNNNNNNGG 2 cut(s) 434, 1203
BsmAI GTCTC 6 cut(s) 399, 479, 677, 1087, 1286, 1317
BsnI GGCC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 1317
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 6 cut(s) 365, 577, 607, 690, 823, 862
BspACI CCGC 5 cut(s) 584, 858, 1184, 1203, 1212
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 4 cut(s) 931, 968, 1164, 1296
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 199, 628, 884
BspMI ACCTGC 1 cut(s) 456
BspPI GGATC 1 cut(s) 572
BspQI GCTCTTC 1 cut(s) 1122
BspT107I GGYRCC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 1317
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 3 cut(s) 157, 630, 1197
BssECI CCNNGG 2 cut(s) 193, 1413
BssMI GATC 6 cut(s) 365, 577, 607, 690, 823, 862
BssT1I CCWWGG 1 cut(s) 1413
Bst4CI ACNGT 6 cut(s) 266, 538, 1064, 1070, 1079, 1273
Bst6I CTCTTC 2 cut(s) 1122, 1222
BstC8I GCNNGC 5 cut(s) 160, 316, 652, 1205, 1314
BstDEI CTNAG 6 cut(s) 114, 918, 955, 1094, 1172, 1283
BstF5I GGATG 3 cut(s) 355, 559, 1355
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 6 cut(s) 368, 580, 610, 693, 826, 865
BstMAI GTCTC 6 cut(s) 399, 479, 677, 1087, 1286, 1317
BstMBI GATC 6 cut(s) 365, 577, 607, 690, 823, 862
BstMWI GCNNNNNNNGC 1 cut(s) 1209
BstNSI RCATGY 1 cut(s) 1136
BstSCI CCNGG 1 cut(s) 1376
BstSFI CTRYAG 1 cut(s) 1060
BstSLI GKGCMC 1 cut(s) 428
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 1006
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 3 cut(s) 355, 559, 1355
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 2 cut(s) 592, 1069
BveI ACCTGC 1 cut(s) 456
Cac8I GCNNGC 5 cut(s) 160, 316, 652, 1205, 1314
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 197, 882
CseI GACGC 1 cut(s) 986
Csp6I GTAC 3 cut(s) 445, 614, 627
CviAII CATG 8 cut(s) 58, 401, 432, 749, 781, 796, 905, 1133
CviQI GTAC 3 cut(s) 445, 614, 627
DdeI CTNAG 6 cut(s) 114, 918, 955, 1094, 1172, 1283
DpnI GATC 6 cut(s) 367, 579, 609, 692, 825, 864
DpnII GATC 6 cut(s) 365, 577, 607, 690, 823, 862
DraI TTTAAA 2 cut(s) 324, 1051
Eam1104I CTCTTC 2 cut(s) 1122, 1222
EarI CTCTTC 2 cut(s) 1122, 1222
Eco130I CCWWGG 1 cut(s) 1413
Eco31I GGTCTC 1 cut(s) 1317
Eco47I GGWCC 1 cut(s) 882
Eco57I CTGAAG 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 197
EcoRI GAATTC 2 cut(s) 65, 1109
EcoT14I CCWWGG 1 cut(s) 1413
ErhI CCWWGG 1 cut(s) 1413
FaeI CATG 8 cut(s) 61, 404, 435, 752, 784, 799, 908, 1136
FatI CATG 8 cut(s) 57, 400, 431, 748, 780, 795, 904, 1132
FauI CCCGC 1 cut(s) 1196
FauNDI CATATG 2 cut(s) 288, 811
Fnu4HI GCNGC 1 cut(s) 995
FokI GGATG 3 cut(s) 362, 566, 1342
Fsp4HI GCNGC 1 cut(s) 995
FspBI CTAG 3 cut(s) 140, 1278, 1371
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 995
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 1377
HgaI GACGC 1 cut(s) 986
HhaI GCGC 1 cut(s) 225
Hin1II CATG 8 cut(s) 61, 404, 435, 752, 784, 799, 908, 1136
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 2 cut(s) 1057, 1301
HindII GTYRAC 2 cut(s) 1057, 1301
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 6 cut(s) 121, 407, 745, 785, 802, 1193
HpaI GTTAAC 1 cut(s) 1057
HpaII CCGG 1 cut(s) 1377
HphI GGTGA 2 cut(s) 254, 1285
Hpy166II GTNNAC 3 cut(s) 1057, 1301, 1364
Hpy188I TCNGA 8 cut(s) 194, 342, 394, 711, 818, 867, 958, 1240
Hpy188III TCNNGA 9 cut(s) 185, 369, 492, 832, 986, 1114, 1285, 1350, 1371
Hpy8I GTNNAC 3 cut(s) 1057, 1301, 1364
HpyAV CCTTC 3 cut(s) 40, 1337, 1387
HpyCH4III ACNGT 6 cut(s) 266, 538, 1064, 1070, 1079, 1273
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 8 cut(s) 96, 158, 269, 400, 597, 637, 654, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 1209
HpyF3I CTNAG 6 cut(s) 114, 918, 955, 1094, 1172, 1283
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 8 cut(s) 61, 404, 435, 752, 784, 799, 908, 1136
HspAI GCGC 1 cut(s) 223
KpnI GGTACC 1 cut(s) 630
KspAI GTTAAC 1 cut(s) 1057
Kzo9I GATC 6 cut(s) 365, 577, 607, 690, 823, 862
LguI GCTCTTC 1 cut(s) 1122
LmnI GCTCC 2 cut(s) 437, 518
Lsp1109I GCAGC 1 cut(s) 1006
LweI GCATC 3 cut(s) 145, 257, 544
MaeI CTAG 3 cut(s) 140, 1278, 1371
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 6 cut(s) 11, 216, 921, 1064, 1073, 1273
MalI GATC 6 cut(s) 367, 579, 609, 692, 825, 864
MboI GATC 6 cut(s) 365, 577, 607, 690, 823, 862
MhlI GDGCHC 1 cut(s) 428
MlyI GAGTC 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 7 cut(s) 323, 479, 528, 702, 876, 1050, 1056
MspI CCGG 1 cut(s) 1377
MspR9I CCNGG 1 cut(s) 1378
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 1209
NciI CCSGG 1 cut(s) 1378
NdeI CATATG 2 cut(s) 288, 811
NdeII GATC 6 cut(s) 365, 577, 607, 690, 823, 862
NlaIII CATG 8 cut(s) 61, 404, 435, 752, 784, 799, 908, 1136
NlaIV GGNNCC 3 cut(s) 199, 628, 884
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 3 cut(s) 1064, 1073, 1273
NspI RCATGY 1 cut(s) 1136
PciSI GCTCTTC 1 cut(s) 1122
PcsI WCGNNNNNNNCGW 1 cut(s) 984
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 5 cut(s) 121, 745, 785, 802, 1193
PflFI GACNNNGTC 1 cut(s) 1079
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 996
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PshBI ATTAAT 1 cut(s) 876
PspN4I GGNNCC 3 cut(s) 199, 628, 884
PspPI GGNCC 2 cut(s) 197, 882
PsyI GACNNNGTC 1 cut(s) 1079
RsaI GTAC 3 cut(s) 446, 615, 628
RsaNI GTAC 3 cut(s) 445, 614, 627
SapI GCTCTTC 1 cut(s) 1122
SaqAI TTAA 7 cut(s) 323, 479, 528, 702, 876, 1050, 1056
SatI GCNGC 1 cut(s) 995
Sau3AI GATC 6 cut(s) 365, 577, 607, 690, 823, 862
Sau96I GGNCC 2 cut(s) 197, 882
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 1378
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 3 cut(s) 145, 257, 544
SfcI CTRYAG 1 cut(s) 1060
SinI GGWCC 1 cut(s) 882
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
SpeI ACTAGT 1 cut(s) 1277
SsiI CCGC 5 cut(s) 584, 858, 1184, 1203, 1212
SspMI CTAG 3 cut(s) 140, 1278, 1371
StyD4I CCNGG 1 cut(s) 1376
StyI CCWWGG 1 cut(s) 1413
TaaI ACNGT 6 cut(s) 266, 538, 1064, 1070, 1079, 1273
TaiI ACGT 1 cut(s) 218
TaqI TCGA 5 cut(s) 72, 364, 459, 987, 1391
TatI WGTACW 1 cut(s) 613
TfiI GAWTC 5 cut(s) 121, 745, 785, 802, 1193
Tru1I TTAA 7 cut(s) 323, 479, 528, 702, 876, 1050, 1056
Tru9I TTAA 7 cut(s) 323, 479, 528, 702, 876, 1050, 1056
TscAI CASTG 2 cut(s) 599, 1069
TseFI GTSAC 3 cut(s) 1064, 1073, 1273
TseI GCWGC 1 cut(s) 994
Tsp45I GTSAC 3 cut(s) 1064, 1073, 1273
TspDTI ATGAA 6 cut(s) 22, 737, 812, 893, 919, 1022
TspRI CASTG 2 cut(s) 599, 1069
Tth111I GACNNNGTC 1 cut(s) 1079
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 882
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 4 cut(s) 65, 207, 326, 1109
XbaI TCTAGA 1 cut(s) 1370
XceI RCATGY 1 cut(s) 1136
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 3 cut(s) 140, 1278, 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.