RLG00000034885

NAD-dependent protein deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013314
Physical Location & Seq
Forward (+)
56581179 .. 56588736
7558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034885

Sequence Viewer

Length: 1593 bp
ATGTCCTTGGGTTATGCAGAGAAGCTTTCGTACATTGAAGATGTGGGCAGCGTGGGAATGTCTGAACATTTCGACACCCCTGACGTTCTGCAACAAAAGATTGAACAGCTTGCCCTGCTGGTACAGAAGAGTAAGCATCTAGTGGTGTTTACAGGTGCAGGAATATCAACTTCTTGTGGTATACCTGATTTTCGAGGTCCAAAGGGAATTTGGACTCTTCAGCGTGAAGGCAAAGCCTTGCCAGAAGCATCATTGCCATTTCATCGTGCAATGCCGAGCTTGACTCATATGGCTTTGGTTGCGCTGGAGAGGGCTGGCATATTGAAGTTTGTTATTAGCCAGAATGTTGACGGCCTCCATCTTCGATCTGGAATACCAAGGAAGAAACTTGCGGAGTTGCATGGTAACTCCTTTATGGAAGTCTGCCCTTCTTGTGGCATCGAGTATGTGCGGGATTTTGAGGTAGAAACGATTGGCCTAAAGGAGACTTCCAGGAGGTGCTCAGATAAAAAGTGTGGAGCAAGGCTTAAGGATACAGTTCTTGACTGGGAGGATGCATTGCCCTCAAAGGAGATGAATCAGGCTGAAAAGCACTGCAGAATGGCTGATGTTGTTTTATGTTTGGGAACAAGTTTGCAGATAACACCAGCATGCAACCTACCTCTGAGATCACTCCGTGGTGGGGGAAAGATTGTAATTGTTAATCTTCAGAAAACTCCAAAGGACAAGAAGGCAACTTTACTGCTCCATGGGCTTGTAGATAAGGTTATTTCAGGTGTCTTGGACAGTCTAAATCTTCAGATTCCTCCATTTGTTCGGATAGATCTTTTTCAGATCATTCTAACTCAAGCATTGAGTATAGATGAAAAGTATGTGAACTGGAACCTCCGGGTAGCAAGTGTACATGGACTTAAAGCTCCATTGCCATTCATCAAATCTATTGAGATATCCTTCGTAGACAACCAAGATTATAAAGCAGCTATTCTACAGAACGAGCCATTTCAACTGAAAAGGAGAACCTCACAGTCAAAATCAATTGAAATGGTTTTGAAATTCAACTTCATTGATGGTTGTGGTTGTCAATTCACAGAGATTAACGTGTCTCTCAATTGGGAGGTTTCAACAGACCATTCTAAGCTTGATAAAGATGCCATATTGCAAAAGCTCAGAGACACAGCTACTGATGAATCATGCTGCGGCAAGAATGTTGTTGTTGATAGAAATTTCATCCCTAGCCCAAAAACTGAGGTTCTTACGTATGCCATTGTAACCAACGTTGTCACGTATGAGAAGACCACTGAAGCTGCGCAAGCTGACACTCTAAAGCGCAACTATTCTGTCAACGGAGTTGCAGCTTTAATTATTCTATGGTGGAGTTTATGGACTGAGACAAATGAAGGGTTTCTTGGAGCTGTACCTAAGGCTGCTGCAGGAATTTATGCTCAAGATCAATGGCAATGGGAGAAACTTTTGGAGGCGCAAAATGAGGGAGAGCAGCAGTGGCAGCAGAAGTGGTTGTGTGCTACTGGTGTTGTTGGGCAGCTATGTACTGCTGCTGCTGCTGCTTGGAGCAGTAGCTCTACTGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05230 map04714 map05230
Pfam Domains
Protein Families
SIR2

Protein Analysis

531

Amino Acids

58.82

Weight (kDa)

6.8

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 87 - 216 8.6e-21 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55760
fragaria_vesca FvH4_3g29170 FvH4_3g29170
malus_domestica MD03G1179400.v1.1 MD11G1199100.v1.1
prunus_persica Prupe.4G243700_v2.0.a1 Prupe.4G243700_v2.0.a1
pyrus_communis pycom03g13540 pycom11g17170
rosa_chinensis RchiOBHm_Chr5g0053471
rosa_laevigata RLG00000034885
rosa_roxburghii Rroxscaffold_1G00026940
rosa_rugosa Rorug05G0280200
rosa_samantha Rh5AG351400 Rh5BG363600 Rh5DG378300 Rh7BG051900
rosa_wichuraiana Rw5G033230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 972
Acc16I TGCGCA 1 cut(s) 1308
AccI GTMKAC 2 cut(s) 181, 957
AciI CCGC 3 cut(s) 392, 451, 1197
AclI AACGTT 1 cut(s) 1275
AcsI RAATTY 4 cut(s) 207, 1052, 1222, 1434
AcuI CTGAAG 4 cut(s) 203, 692, 782, 1320
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 5 cut(s) 32, 123, 903, 1416, 1549
AfiI CCNNNNNNNGG 2 cut(s) 434, 682
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 1098
AgsI TTSAA 8 cut(s) 38, 104, 325, 1004, 1040, 1051, 1057, 1122
AjnI CCWGG 1 cut(s) 491
AjuI GAANNNNNNNTTGG 2 cut(s) 1389, 1421
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 4 cut(s) 479, 1107, 1164, 1382
AlwNI CAGNNNCTG 1 cut(s) 1181
AoxI GGCC 2 cut(s) 352, 475
ApoI RAATTY 4 cut(s) 207, 1052, 1222, 1434
Asp700I GAANNNNTTC 1 cut(s) 1401
AspLEI GCGC 4 cut(s) 304, 1309, 1329, 1480
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 890
AvaII GGWCC 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 1419
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbsI GAAGAC 1 cut(s) 1298
Bbv12I GWGCWC 1 cut(s) 503
BccI CCATC 2 cut(s) 366, 1061
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 493
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 4 cut(s) 479, 1107, 1164, 1382
BfaI CTAG 2 cut(s) 140, 1233
BfmI CTRYAG 3 cut(s) 595, 986, 1428
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 526
BglII AGATCT 1 cut(s) 823
Bme1390I CCNGG 2 cut(s) 493, 890
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 884
BmrFI CCNGG 2 cut(s) 493, 890
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 5 cut(s) 145, 257, 447, 544, 1138
BmuI ACTGGG 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 1298
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 831, 1428
BpuMI CCSGG 1 cut(s) 890
BsaAI YACGTR 2 cut(s) 1257, 1284
BsaJI CCNNGG 4 cut(s) 6, 377, 676, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 682
Bse1I ACTGG 3 cut(s) 551, 884, 1531
Bse21I CCTNAGG 1 cut(s) 1419
Bse3DI GCAATG 5 cut(s) 251, 276, 557, 920, 1463
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 4 cut(s) 6, 377, 676, 748
BseGI GGATG 2 cut(s) 559, 1227
BseLI CCNNNNNNNGG 2 cut(s) 434, 682
BseMI GCAATG 5 cut(s) 251, 276, 557, 920, 1463
BseMII CTCAG 5 cut(s) 516, 656, 1180, 1236, 1377
BseNI ACTGG 3 cut(s) 551, 884, 1531
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 2 cut(s) 354, 477
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 889
BslI CCNNNNNNNGG 2 cut(s) 434, 682
BsmAI GTCTC 4 cut(s) 479, 1107, 1164, 1382
BsnI GGCC 2 cut(s) 354, 477
Bsp1286I GDGCHC 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 5 cut(s) 365, 668, 823, 834, 1447
Bsp19I CCATGG 1 cut(s) 748
BspACI CCGC 3 cut(s) 392, 451, 1197
BspANI GGCC 2 cut(s) 354, 477
BspCNI CTCAG 5 cut(s) 515, 657, 1179, 1237, 1378
BspLI GGNNCC 1 cut(s) 884
BspMAI CTGCAG 2 cut(s) 599, 1432
BspTI CTTAAG 1 cut(s) 527
BsrDI GCAATG 5 cut(s) 251, 276, 557, 920, 1463
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 3 cut(s) 551, 884, 1531
BssECI CCNNGG 4 cut(s) 6, 377, 676, 748
BssMI GATC 5 cut(s) 365, 668, 823, 834, 1447
BssNAI GTATAC 1 cut(s) 182
BssT1I CCWWGG 3 cut(s) 6, 377, 748
Bst1107I GTATAC 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 4 cut(s) 538, 788, 1026, 1585
Bst6I CTCTTC 2 cut(s) 122, 222
BstAFI CTTAAG 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 901
BstBAI YACGTR 2 cut(s) 1257, 1284
BstC8I GCNNGC 4 cut(s) 111, 316, 652, 1311
BstDEI CTNAG 7 cut(s) 502, 665, 1134, 1166, 1245, 1386, 1419
BstDSI CCRYGG 2 cut(s) 676, 748
BstF5I GGATG 2 cut(s) 559, 1227
BstHHI GCGC 4 cut(s) 304, 1309, 1329, 1480
BstKTI GATC 5 cut(s) 368, 671, 826, 837, 1450
BstMAI GTCTC 4 cut(s) 479, 1107, 1164, 1382
BstMBI GATC 5 cut(s) 365, 668, 823, 834, 1447
BstMWI GCNNNNNNNGC 8 cut(s) 115, 299, 751, 1310, 1501, 1504, 1559, 1562
BstNI CCWGG 1 cut(s) 493
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 491, 888
BstSFI CTRYAG 3 cut(s) 595, 986, 1428
BstSNI TACGTA 1 cut(s) 1257
BstV2I GAAGAC 1 cut(s) 1298
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BstZ17I GTATAC 1 cut(s) 182
Bsu36I CCTNAGG 1 cut(s) 1419
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 2 cut(s) 354, 477
BtgI CCRYGG 2 cut(s) 676, 748
BtsCI GGATG 2 cut(s) 559, 1227
BtsI GCAGTG 2 cut(s) 592, 1505
BtsIMutI CAGTG 3 cut(s) 592, 1296, 1505
Cac8I GCNNGC 4 cut(s) 111, 316, 652, 1311
CaiI CAGNNNCTG 1 cut(s) 1181
CfoI GCGC 4 cut(s) 304, 1309, 1329, 1480
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 5 cut(s) 31, 122, 902, 1415, 1548
CviAII CATG 5 cut(s) 401, 651, 749, 905, 1191
CviQI GTAC 5 cut(s) 31, 122, 902, 1415, 1548
DdeI CTNAG 7 cut(s) 502, 665, 1134, 1166, 1245, 1386, 1419
DpnI GATC 5 cut(s) 367, 670, 825, 836, 1449
DpnII GATC 5 cut(s) 365, 668, 823, 834, 1447
DraIII CACNNNGTG 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 122, 222
EarI CTCTTC 2 cut(s) 122, 222
Eco105I TACGTA 1 cut(s) 1257
Eco130I CCWWGG 3 cut(s) 6, 377, 748
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 4 cut(s) 203, 692, 782, 1320
Eco81I CCTNAGG 1 cut(s) 1419
EcoRII CCWGG 1 cut(s) 491
EcoRV GATATC 1 cut(s) 948
EcoT14I CCWWGG 3 cut(s) 6, 377, 748
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 3 cut(s) 6, 377, 748
FaeI CATG 5 cut(s) 404, 654, 752, 908, 1194
FalI AAGNNNNNCTT 2 cut(s) 1389, 1421
FatI CATG 5 cut(s) 400, 650, 748, 904, 1190
FauI CCCGC 1 cut(s) 444
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 2 cut(s) 181, 957
FokI GGATG 2 cut(s) 566, 1214
FspBI CTAG 2 cut(s) 140, 1233
FspI TGCGCA 1 cut(s) 1308
GlaI GCGC 4 cut(s) 303, 1308, 1328, 1479
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 2 cut(s) 354, 477
HapII CCGG 1 cut(s) 889
HhaI GCGC 4 cut(s) 304, 1309, 1329, 1480
Hin1II CATG 5 cut(s) 404, 654, 752, 908, 1194
Hin6I GCGC 4 cut(s) 302, 1307, 1327, 1478
HinP1I GCGC 4 cut(s) 302, 1307, 1327, 1478
HincII GTYRAC 2 cut(s) 349, 1342
HindII GTYRAC 2 cut(s) 349, 1342
HindIII AAGCTT 2 cut(s) 23, 1136
HinfI GANTC 5 cut(s) 214, 283, 577, 802, 1187
HpaII CCGG 1 cut(s) 889
Hpy166II GTNNAC 7 cut(s) 150, 182, 349, 877, 902, 958, 1342
Hpy188I TCNGA 8 cut(s) 64, 505, 666, 711, 801, 819, 834, 1169
Hpy188III TCNNGA 3 cut(s) 369, 542, 1445
Hpy8I GTNNAC 7 cut(s) 150, 182, 349, 877, 902, 958, 1342
HpyAV CCTTC 5 cut(s) 221, 438, 724, 961, 1391
HpyCH4III ACNGT 4 cut(s) 538, 788, 1026, 1585
HpyCH4IV ACGT 5 cut(s) 84, 1098, 1256, 1275, 1283
HpyF10VI GCNNNNNNNGC 8 cut(s) 115, 299, 751, 1310, 1501, 1504, 1559, 1562
HpyF3I CTNAG 7 cut(s) 502, 665, 1134, 1166, 1245, 1386, 1419
HpySE526I ACGT 5 cut(s) 84, 1098, 1256, 1275, 1283
Hsp92II CATG 5 cut(s) 404, 654, 752, 908, 1194
HspAI GCGC 4 cut(s) 302, 1307, 1327, 1478
Kzo9I GATC 5 cut(s) 365, 668, 823, 834, 1447
LmnI GCTCC 5 cut(s) 518, 750, 922, 1409, 1569
LweI GCATC 5 cut(s) 145, 257, 447, 544, 1138
MaeI CTAG 2 cut(s) 140, 1233
MaeII ACGT 5 cut(s) 84, 1098, 1256, 1275, 1283
MaeIII GTNAC 3 cut(s) 404, 1267, 1279
MalI GATC 5 cut(s) 367, 670, 825, 836, 1449
MboI GATC 5 cut(s) 365, 668, 823, 834, 1447
MboII GAAGA 8 cut(s) 50, 139, 209, 353, 394, 698, 788, 1303
MfeI CAATTG 2 cut(s) 1035, 1108
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 9 cut(s) 207, 696, 1035, 1052, 1082, 1108, 1222, 1359, 1434
MlyI GAGTC 2 cut(s) 208, 277
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 1401
MseI TTAA 5 cut(s) 528, 702, 912, 1095, 1358
MslI CAYNNNNRTG 1 cut(s) 649
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 2 cut(s) 493, 890
MunI CAATTG 2 cut(s) 1035, 1108
MvaI CCWGG 1 cut(s) 493
MwoI GCNNNNNNNGC 8 cut(s) 115, 299, 751, 1310, 1501, 1504, 1559, 1562
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 1 cut(s) 748
NdeI CATATG 1 cut(s) 288
NdeII GATC 5 cut(s) 365, 668, 823, 834, 1447
NlaIII CATG 5 cut(s) 404, 654, 752, 908, 1194
NlaIV GGNNCC 1 cut(s) 884
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 1279
NsbI TGCGCA 1 cut(s) 1308
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 654
PaeI GCATGC 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 1401
PfeI GAWTC 3 cut(s) 577, 802, 1187
PfoI TCCNGGA 1 cut(s) 491
PleI GAGTC 2 cut(s) 208, 277
PpsI GAGTC 2 cut(s) 208, 277
Ppu21I YACGTR 2 cut(s) 1257, 1284
PsiI TTATAA 1 cut(s) 972
Psp1406I AACGTT 1 cut(s) 1275
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 884
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 2 cut(s) 599, 1432
PstNI CAGNNNCTG 1 cut(s) 1181
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 5 cut(s) 32, 123, 903, 1416, 1549
RsaNI GTAC 5 cut(s) 31, 122, 902, 1415, 1548
RseI CAYNNNNRTG 1 cut(s) 649
SaqAI TTAA 5 cut(s) 528, 702, 912, 1095, 1358
Sau3AI GATC 5 cut(s) 365, 668, 823, 834, 1447
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 208, 277
ScrFI CCNGG 2 cut(s) 493, 890
SduI GDGCHC 1 cut(s) 503
SfaNI GCATC 5 cut(s) 145, 257, 447, 544, 1138
SfcI CTRYAG 3 cut(s) 595, 986, 1428
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 649
SmlI CTYRAG 3 cut(s) 527, 846, 1443
SmoI CTYRAG 3 cut(s) 527, 846, 1443
SnaBI TACGTA 1 cut(s) 1257
SphI GCATGC 1 cut(s) 654
Sse9I AATT 9 cut(s) 207, 696, 1035, 1052, 1082, 1108, 1222, 1359, 1434
SsiI CCGC 3 cut(s) 392, 451, 1197
SspMI CTAG 2 cut(s) 140, 1233
StyD4I CCNGG 2 cut(s) 491, 888
StyI CCWWGG 3 cut(s) 6, 377, 748
TaaI ACNGT 4 cut(s) 538, 788, 1026, 1585
TaiI ACGT 5 cut(s) 87, 1101, 1259, 1278, 1286
TaqI TCGA 4 cut(s) 72, 193, 364, 441
TasI AATT 9 cut(s) 207, 696, 1035, 1052, 1082, 1108, 1222, 1359, 1434
TatI WGTACW 2 cut(s) 901, 1547
TauI GCSGC 1 cut(s) 1200
TfiI GAWTC 3 cut(s) 577, 802, 1187
Tru1I TTAA 5 cut(s) 528, 702, 912, 1095, 1358
Tru9I TTAA 5 cut(s) 528, 702, 912, 1095, 1358
TscAI CASTG 3 cut(s) 599, 1303, 1505
TseFI GTSAC 1 cut(s) 1279
Tsp45I GTSAC 1 cut(s) 1279
TspDTI ATGAA 8 cut(s) 251, 590, 879, 919, 1051, 1200, 1216, 1410
TspGWI ACGGA 2 cut(s) 665, 1359
TspRI CASTG 3 cut(s) 599, 1303, 1505
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 4 cut(s) 207, 1052, 1222, 1434
XceI RCATGY 1 cut(s) 654
XcmI CCANNNNNNNNNTGG 2 cut(s) 207, 365
XmiI GTMKAC 2 cut(s) 181, 957
XmnI GAANNNNTTC 1 cut(s) 1401
XspI CTAG 2 cut(s) 140, 1233
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.