Rw5G033230

NAD-dependent protein deacetylase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
56401752 .. 56409951
8200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033230.1

Sequence Viewer

Length: 1461 bp
ATGACGCGCTGCCTCAGCCATCAAGCTAGCCCTTACAAATCTGACCAGATCTCCATGCCCGGCCCACTGAGATTTCAAGTTTCCAGTGTGATCGACCGGAGATTTGAGTCGCCCTCTCTTCGGTCTGATTCGCACACCCGGATCCCAAGTATTGAACAGCTTGCCCTGCTGGTACAGAAGAGTAAGCATCTAGTGGTGTTTACAGGTGCAGGAATATCAACTTCTTGTGGTATACCTGATTTTCGAGGTCCAAAGGGAATTTGGACTCTTCAGCGTGAAGGCAAAGCCTTGCCAGAAGCATCATTGCCATTTCATCGTGCAATGCCGAGCTTGACTCATATGGCTTTGGTTGTGCTGGAGAGGGCTGGCATACTGAAGTTTGTTATTAGCCAGAATGTTGACGGCCTCCATCTTCGATCTGGAATACCAAGGAAGAAACTTGCGGAGTTGCATGGTAACTCCTTTATGGAAGTCTGCCCTTCTTGTGGCATCGAGTATATGCGGGATTTTGAGGTAGAAACTATTGGCCTAAAGGAGACTTCCAGAAGGTGCTCAGATAAAAAGTGTGGAGCTAGGCTTAAGGATACAGTTCTTGACTGGGAGGATGCATTGCCCTCAAAGGAGATGAATCAGGCTGAAAAGCACTGCAGAATGGCTGATGTTGTTTTATGTTTGGGAACAAGTTTGCAGATAACACCAGCATGCAACCTACCTCTGAGATCACTCCGTGGTGGGGGAAAGATTGTAATTGTTAATCTTCAGAAAACTCCAAAGGACAAGAAGGCAACTTTACTGCTCCATGGGCTTGTAGATAAGGTTATTTCAGGTGTCTTGGACAGTCTAAATCTTCAGATTCCTCCATTTGTTCGGATAGATCTTTTTCAGATCATTCTAACTCAAGCATTGAGTATAGATGAAAAGTATGTGAACTGGAACCTCCGGGTAGCAAGTGTACATGGACTTAAAGCTCCATTGCCATTCATCAAATCTATTGAGATATCCTTCGTAGACAATCAAGATTATAAAGCAGCTATTCTACAGAACGAGCCATTTCAATTGAAAAGGAGAACCTCACAGTCAAAATCAATTGAAATGGTTTTGAAATTCAACTTCATTGATGGTTGTGGCTGTCCATTCACAGAGATTAACGTGTCTCTCAATTGGGAGGTTTCAACAGACCATTCTAAGCTTGATAAAGATGCCATATTGCAAAAGCTCAGAGACACAGCTACTGATGAATCATGCTGCGGCAAGAATGCTGTTGTTGAGAGAAATTTCACCCCTAGCCCAAAAACTGAGGTTCTTACGTATGCCATTGTAACCAACGTTGTCACATATAAGAAGACCACTGAAGCTGTGCAAGCTGACACTCTAAGTAATGGGGTTAAAAGGCGGAAGAACGATGGTCCTGCAACATCTAAGAAACGATCTAAAGTGCAAAGGCGCAAATCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

54.2

Weight (kDa)

9.46

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 104 - 233 7.9e-21 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013314)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AccI GTMKAC 2 cut(s) 232, 1008
AccII CGCG 1 cut(s) 7
AciI CCGC 4 cut(s) 443, 502, 1248, 1393
AclI AACGTT 1 cut(s) 1326
AclWI GGATC 2 cut(s) 136, 149
AcsI RAATTY 3 cut(s) 258, 1103, 1273
AcuI CTGAAG 5 cut(s) 254, 395, 743, 833, 1371
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 2 cut(s) 174, 954
AfiI CCNNNNNNNGG 3 cut(s) 120, 485, 733
AflII CTTAAG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 1149
AgsI TTSAA 8 cut(s) 77, 155, 1055, 1060, 1091, 1102, 1108, 1173
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 3 cut(s) 530, 1158, 1215
AlwI GGATC 2 cut(s) 136, 149
AlwNI CAGNNNCTG 1 cut(s) 1232
AoxI GGCC 3 cut(s) 61, 403, 526
ApeKI GCWGC 3 cut(s) 9, 1028, 1245
ApoI RAATTY 3 cut(s) 258, 1103, 1273
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 2 cut(s) 9, 1446
AspS9I GGNCC 3 cut(s) 62, 248, 1406
AsuC2I CCSGG 3 cut(s) 60, 139, 941
AsuHPI GGTGA 1 cut(s) 1270
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 2 cut(s) 248, 1406
BamHI GGATCC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 1349
Bbv12I GWGCWC 1 cut(s) 554
BbvCI CCTCAGC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 1040, 1232
BccI CCATC 4 cut(s) 27, 417, 1112, 1397
BceAI ACGGC 1 cut(s) 418
BcgI CGANNNNNNTGC 2 cut(s) 1391, 1425
BciVI GTATCC 1 cut(s) 577
BcnI CCSGG 3 cut(s) 60, 139, 941
BcoDI GTCTC 3 cut(s) 530, 1158, 1215
BfaI CTAG 5 cut(s) 27, 191, 573, 1284, 1452
BfmI CTRYAG 2 cut(s) 646, 1037
BfrI CTTAAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 577
BglII AGATCT 2 cut(s) 48, 874
BisI GCNGC 4 cut(s) 10, 1029, 1246, 1249
BlsI GCNGC 4 cut(s) 11, 1030, 1247, 1250
Bme1390I CCNGG 3 cut(s) 60, 139, 941
Bme18I GGWCC 2 cut(s) 248, 1406
BmgT120I GGNCC 3 cut(s) 62, 248, 1406
BmiI GGNNCC 2 cut(s) 143, 935
BmrFI CCNGG 3 cut(s) 60, 139, 941
BmrI ACTGGG 1 cut(s) 607
BmsI GCATC 5 cut(s) 196, 308, 498, 595, 1189
BmtI GCTAGC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 607
BpiI GAAGAC 1 cut(s) 1349
BplI GAGNNNNNCTC 4 cut(s) 98, 130, 319, 351
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 882
BpuMI CCSGG 3 cut(s) 60, 139, 941
BsaAI YACGTR 1 cut(s) 1308
BsaJI CCNNGG 3 cut(s) 428, 727, 799
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 485, 733
Bse1I ACTGG 3 cut(s) 84, 602, 935
Bse3DI GCAATG 4 cut(s) 302, 327, 608, 971
BseDI CCNNGG 3 cut(s) 428, 727, 799
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 3 cut(s) 120, 485, 733
BseMI GCAATG 4 cut(s) 302, 327, 608, 971
BseMII CTCAG 6 cut(s) 28, 59, 567, 707, 1231, 1287
BseNI ACTGG 3 cut(s) 84, 602, 935
BseXI GCAGC 2 cut(s) 1040, 1232
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 3 cut(s) 63, 405, 528
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 4 cut(s) 60, 97, 139, 940
BslI CCNNNNNNNGG 3 cut(s) 120, 485, 733
BsmAI GTCTC 3 cut(s) 530, 1158, 1215
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 3 cut(s) 63, 405, 528
Bsp1286I GDGCHC 1 cut(s) 554
Bsp1407I TGTACA 1 cut(s) 952
Bsp143I GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
Bsp19I CCATGG 1 cut(s) 799
BspACI CCGC 4 cut(s) 443, 502, 1248, 1393
BspANI GGCC 3 cut(s) 63, 405, 528
BspCNI CTCAG 6 cut(s) 27, 60, 566, 708, 1230, 1288
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 143, 935
BspMAI CTGCAG 1 cut(s) 650
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 136, 149
BspTI CTTAAG 1 cut(s) 578
BsrDI GCAATG 4 cut(s) 302, 327, 608, 971
BsrGI TGTACA 1 cut(s) 952
BsrI ACTGG 3 cut(s) 84, 602, 935
BssECI CCNNGG 3 cut(s) 428, 727, 799
BssMI GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
BssNAI GTATAC 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 428, 799
Bst1107I GTATAC 1 cut(s) 233
Bst4CI ACNGT 3 cut(s) 589, 839, 1077
Bst6I CTCTTC 3 cut(s) 123, 173, 273
BstAFI CTTAAG 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 952
BstBAI YACGTR 1 cut(s) 1308
BstC8I GCNNGC 5 cut(s) 28, 162, 367, 703, 1362
BstDEI CTNAG 9 cut(s) 14, 68, 553, 716, 1185, 1217, 1296, 1373, 1419
BstDSI CCRYGG 2 cut(s) 727, 799
BstF5I GGATG 1 cut(s) 610
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 2 cut(s) 9, 1446
BstKTI GATC 8 cut(s) 51, 93, 144, 419, 722, 877, 888, 1430
BstMAI GTCTC 3 cut(s) 530, 1158, 1215
BstMBI GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 15, 166, 802, 1361
BstNSI RCATGY 1 cut(s) 705
BstSCI CCNGG 3 cut(s) 58, 137, 939
BstSFI CTRYAG 2 cut(s) 646, 1037
BstSNI TACGTA 1 cut(s) 1308
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 1040, 1232
BstV2I GAAGAC 1 cut(s) 1349
BstX2I RGATCY 3 cut(s) 48, 141, 874
BstYI RGATCY 3 cut(s) 48, 141, 874
BstZ17I GTATAC 1 cut(s) 233
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 3 cut(s) 63, 405, 528
BtgI CCRYGG 2 cut(s) 727, 799
BtsCI GGATG 1 cut(s) 610
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 4 cut(s) 65, 91, 643, 1347
Cac8I GCNNGC 5 cut(s) 28, 162, 367, 703, 1362
CaiI CAGNNNCTG 1 cut(s) 1232
CfoI GCGC 2 cut(s) 9, 1446
Cfr13I GGNCC 3 cut(s) 62, 248, 1406
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 173, 953
CviAII CATG 6 cut(s) 55, 452, 702, 800, 956, 1242
CviQI GTAC 2 cut(s) 173, 953
DdeI CTNAG 9 cut(s) 14, 68, 553, 716, 1185, 1217, 1296, 1373, 1419
DpnI GATC 8 cut(s) 50, 92, 143, 418, 721, 876, 887, 1429
DpnII GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
DraIII CACNNNGTG 1 cut(s) 728
Eam1104I CTCTTC 3 cut(s) 123, 173, 273
EarI CTCTTC 3 cut(s) 123, 173, 273
EciI GGCGGA 1 cut(s) 1408
Eco105I TACGTA 1 cut(s) 1308
Eco130I CCWWGG 2 cut(s) 428, 799
Eco32I GATATC 1 cut(s) 999
Eco47I GGWCC 2 cut(s) 248, 1406
Eco57I CTGAAG 5 cut(s) 254, 395, 743, 833, 1371
EcoRV GATATC 1 cut(s) 999
EcoT14I CCWWGG 2 cut(s) 428, 799
EcoT22I ATGCAT 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 428, 799
FaeI CATG 6 cut(s) 58, 455, 705, 803, 959, 1245
FatI CATG 6 cut(s) 54, 451, 701, 799, 955, 1241
FauI CCCGC 1 cut(s) 495
FauNDI CATATG 1 cut(s) 339
FblI GTMKAC 2 cut(s) 232, 1008
Fnu4HI GCNGC 4 cut(s) 10, 1029, 1246, 1249
FokI GGATG 1 cut(s) 617
Fsp4HI GCNGC 4 cut(s) 10, 1029, 1246, 1249
FspBI CTAG 5 cut(s) 27, 191, 573, 1284, 1452
GlaI GCGC 2 cut(s) 8, 1445
GluI GCNGC 4 cut(s) 10, 1029, 1246, 1249
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 3 cut(s) 63, 405, 528
HapII CCGG 4 cut(s) 60, 97, 139, 940
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 9, 1446
Hin1II CATG 6 cut(s) 58, 455, 705, 803, 959, 1245
Hin6I GCGC 2 cut(s) 7, 1444
HinP1I GCGC 2 cut(s) 7, 1444
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 1187
HinfI GANTC 7 cut(s) 107, 128, 265, 334, 628, 853, 1238
HpaII CCGG 4 cut(s) 60, 97, 139, 940
HphI GGTGA 1 cut(s) 1270
Hpy166II GTNNAC 6 cut(s) 201, 233, 400, 928, 953, 1009
Hpy188I TCNGA 9 cut(s) 43, 127, 556, 717, 762, 852, 870, 885, 1220
Hpy188III TCNNGA 4 cut(s) 420, 543, 593, 1016
Hpy8I GTNNAC 6 cut(s) 201, 233, 400, 928, 953, 1009
HpyAV CCTTC 5 cut(s) 272, 489, 540, 775, 1012
HpyCH4III ACNGT 3 cut(s) 589, 839, 1077
HpyCH4IV ACGT 3 cut(s) 1149, 1307, 1326
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 166, 802, 1361
HpyF3I CTNAG 9 cut(s) 14, 68, 553, 716, 1185, 1217, 1296, 1373, 1419
HpySE526I ACGT 3 cut(s) 1149, 1307, 1326
Hsp92II CATG 6 cut(s) 58, 455, 705, 803, 959, 1245
HspAI GCGC 2 cut(s) 7, 1444
Kzo9I GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
LmnI GCTCC 3 cut(s) 569, 801, 973
Lsp1109I GCAGC 2 cut(s) 1040, 1232
LweI GCATC 5 cut(s) 196, 308, 498, 595, 1189
MaeI CTAG 5 cut(s) 27, 191, 573, 1284, 1452
MaeII ACGT 3 cut(s) 1149, 1307, 1326
MaeIII GTNAC 3 cut(s) 455, 1318, 1330
MalI GATC 8 cut(s) 50, 92, 143, 418, 721, 876, 887, 1429
MboI GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
MboII GAAGA 9 cut(s) 110, 190, 260, 404, 445, 749, 839, 1354, 1408
MfeI CAATTG 3 cut(s) 1055, 1086, 1159
MflI RGATCY 3 cut(s) 48, 141, 874
MhlI GDGCHC 1 cut(s) 554
MluCI AATT 7 cut(s) 258, 747, 1055, 1086, 1103, 1159, 1273
MlyI GAGTC 3 cut(s) 116, 259, 328
Mph1103I ATGCAT 1 cut(s) 610
MseI TTAA 5 cut(s) 579, 753, 963, 1146, 1386
MslI CAYNNNNRTG 1 cut(s) 700
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 4 cut(s) 60, 97, 139, 940
MspR9I CCNGG 3 cut(s) 60, 139, 941
MunI CAATTG 3 cut(s) 1055, 1086, 1159
Mva1269I GAATGC 1 cut(s) 1261
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 15, 166, 802, 1361
NciI CCSGG 3 cut(s) 60, 139, 941
NcoI CCATGG 1 cut(s) 799
NdeI CATATG 1 cut(s) 339
NdeII GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 6 cut(s) 58, 455, 705, 803, 959, 1245
NlaIV GGNNCC 2 cut(s) 143, 935
NmeAIII GCCGAG 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 1330
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 1 cut(s) 705
PaeI GCATGC 1 cut(s) 705
PctI GAATGC 1 cut(s) 1261
PfeI GAWTC 4 cut(s) 128, 628, 853, 1238
PkrI GCNGC 4 cut(s) 11, 1030, 1247, 1250
PleI GAGTC 3 cut(s) 115, 259, 328
PpsI GAGTC 3 cut(s) 115, 259, 328
Ppu21I YACGTR 1 cut(s) 1308
PsiI TTATAA 1 cut(s) 1023
Psp1406I AACGTT 1 cut(s) 1326
PspN4I GGNNCC 2 cut(s) 143, 935
PspPI GGNCC 3 cut(s) 62, 248, 1406
PstI CTGCAG 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 1232
PsuI RGATCY 3 cut(s) 48, 141, 874
RsaI GTAC 2 cut(s) 174, 954
RsaNI GTAC 2 cut(s) 173, 953
RseI CAYNNNNRTG 1 cut(s) 700
SaqAI TTAA 5 cut(s) 579, 753, 963, 1146, 1386
SatI GCNGC 4 cut(s) 10, 1029, 1246, 1249
Sau3AI GATC 8 cut(s) 48, 90, 141, 416, 719, 874, 885, 1427
Sau96I GGNCC 3 cut(s) 62, 248, 1406
SchI GAGTC 3 cut(s) 116, 259, 328
ScrFI CCNGG 3 cut(s) 60, 139, 941
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 5 cut(s) 196, 308, 498, 595, 1189
SfcI CTRYAG 2 cut(s) 646, 1037
SinI GGWCC 2 cut(s) 248, 1406
SmiMI CAYNNNNRTG 1 cut(s) 700
SmlI CTYRAG 2 cut(s) 578, 897
SmoI CTYRAG 2 cut(s) 578, 897
SnaBI TACGTA 1 cut(s) 1308
SphI GCATGC 1 cut(s) 705
Sse9I AATT 7 cut(s) 258, 747, 1055, 1086, 1103, 1159, 1273
SsiI CCGC 4 cut(s) 443, 502, 1248, 1393
SspMI CTAG 5 cut(s) 27, 191, 573, 1284, 1452
StyD4I CCNGG 3 cut(s) 58, 137, 939
StyI CCWWGG 2 cut(s) 428, 799
TaaI ACNGT 3 cut(s) 589, 839, 1077
TaiI ACGT 3 cut(s) 1152, 1310, 1329
TaqI TCGA 4 cut(s) 93, 244, 415, 492
TaqII GACCGA 1 cut(s) 111
TasI AATT 7 cut(s) 258, 747, 1055, 1086, 1103, 1159, 1273
TatI WGTACW 1 cut(s) 952
TauI GCSGC 1 cut(s) 1251
TfiI GAWTC 4 cut(s) 128, 628, 853, 1238
Tru1I TTAA 5 cut(s) 579, 753, 963, 1146, 1386
Tru9I TTAA 5 cut(s) 579, 753, 963, 1146, 1386
TscAI CASTG 4 cut(s) 72, 91, 650, 1354
TseFI GTSAC 1 cut(s) 1330
TseI GCWGC 3 cut(s) 9, 1028, 1245
Tsp45I GTSAC 1 cut(s) 1330
TspDTI ATGAA 6 cut(s) 302, 641, 930, 970, 1102, 1251
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 4 cut(s) 72, 91, 650, 1354
Vha464I CTTAAG 1 cut(s) 578
VpaK11BI GGWCC 2 cut(s) 248, 1406
XapI RAATTY 3 cut(s) 258, 1103, 1273
XceI RCATGY 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 2 cut(s) 258, 416
XmiI GTMKAC 2 cut(s) 232, 1008
XspI CTAG 5 cut(s) 27, 191, 573, 1284, 1452
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.