MD03G1179400.v1.1

NAD-dependent protein deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013314
Physical Location & Seq
Forward (+)
24650309 .. 24660667
10359 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1179400.v1.1.491

Sequence Viewer

Length: 1455 bp
ATGTCCTTGGGTTATGCAGAGAAGCTTTCCTACATAGAAGATGTGGGCCAAGTCGGAATGACAGAACATTTCGACATGCCTCAAGTTTTGCAAGAAAAAATTGAGCGGCTCACCATGTTGGTGCAAAAGAGTAAGCATCTGGTGGTGTTTACAGGTGCAGGAATCTCGACCTCTTGTGGTATACCTGATTTTCGAGGTCCAAAGGGAATTTGGACTCTGCAGCATGAAGGCAAAGCCTTACCTGAAGCATCATTGCCATTTCATCGTGCAATGCCTAGCTTGACTCATATGGCTTTGGTTGAACTGGAGAGAGCTGGAATTCTGAAGTTTGTAATTAGCCAGAATGTTGATGGTCTTCATCTTCGATCTGGAATACCAAGGGAGAAACTTGCCGAGTTACATGGTAACTCCTTTCTGGAAACCTGCCCTTCTTGTGGAGTCGAATATTTGAGGGATTTTGAGGTTGAGACTATTGGACTGAAGGAGACTTCAAGACGGTGCTCAGATGAAAATTGTAGAGCAAGGCTTAAGGATACAGTTCTTGACTGGGAGGATGCATTGCCCTCAAAGGAGATGGATCTGGCTGAGAAGCACTGCAGGATGGCTGATGTTGTATTATGTTTGGGGACAAGTTTGCAGATCACTCCAGCATGCAATCTTCCTCTGAAATCGCTCCGTGGTGGGGGAAAGATTGTAATTGTCAACCTTCAGCAAACTCCAAAGGACAAGAAAGCAAATTTAGTGATCCATGGACTCGTTGATAAGGTTATTTCAGGTGTCATGGACTTTCTGAATCTTCAGATTCCTCCATTTGTCCGGATAGATCATGTTCAGATCATTCTAACTCAAGCCTTGAGTTTAGATAAAAAGAATGTGAACTGGAGCCTCCGCGTCGCAAGTGTACATGGACAGAAAGCTCCGTTGTCATTTATCAAATCTATTGAGATATCCTTCTTAGACAATCAAGGGTATAAATCAGCTATTCTACAGAAGGAACCATTTCAATTGAAAAGGAGAACCTTGCAAGGAAAATCGTTTGATATGGTTTTGAAAATCAACTTCATAGATAGTTGTGGTTGTCCATCCACAGAAATTGTTGTACCTCTTAATCTTAAGGTTCCAGAAGATAATCTTCAGCTTGATAAGGATGCCATATTGCAAAAGCTCAGACACACGGCAGTTCAAGAATCATGCTGTGGACAGAATGCAATTGTTGAGAGAAATGTCATCCTGGCCCCAAAGACTGAGGTCATTGCACATGCCATTGTAACGAATGTTGTCCGGTATAGGATGACTGCTGAAGCCTTGCAAGCTGGTTCCCTAGGTAATGCCGTTAAAAGGAGAAAAGAAAGTGTCAATGGTTTTGAAACATCAAGGAAGAGATCAAAAGTGCACAGGAACAAATCTAGGTTTCAGAAACTGAATGGTTGGTGGTTAGGCGAAAAGAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05230 map04714 map05230
Pfam Domains
Protein Families
SIR2

Protein Analysis

485

Amino Acids

54.09

Weight (kDa)

9.07

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 87 - 216 2.9e-20 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55760
fragaria_vesca FvH4_3g29170 FvH4_3g29170
malus_domestica MD03G1179400.v1.1 MD11G1199100.v1.1
prunus_persica Prupe.4G243700_v2.0.a1 Prupe.4G243700_v2.0.a1
pyrus_communis pycom03g13540 pycom11g17170
rosa_chinensis RchiOBHm_Chr5g0053471
rosa_laevigata RLG00000034885
rosa_roxburghii Rroxscaffold_1G00026940
rosa_rugosa Rorug05G0280200
rosa_samantha Rh5AG351400 Rh5BG363600 Rh5DG378300 Rh7BG051900
rosa_wichuraiana Rw5G033230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 181
AccII CGCG 1 cut(s) 891
AccIII TCCGGA 1 cut(s) 816
AciI CCGC 2 cut(s) 106, 889
AclWI GGATC 2 cut(s) 585, 739
AcsI RAATTY 3 cut(s) 207, 318, 736
AcuI CTGAAG 7 cut(s) 264, 344, 500, 692, 782, 1118, 1320
AfaI GTAC 2 cut(s) 903, 1101
AfiI CCNNNNNNNGG 3 cut(s) 434, 682, 1338
AflII CTTAAG 2 cut(s) 527, 1112
AgsI TTSAA 7 cut(s) 302, 492, 1004, 1009, 1051, 1184, 1367
AjnI CCWGG 1 cut(s) 1230
AluBI AGCT 8 cut(s) 25, 279, 314, 917, 980, 1138, 1165, 1313
AluI AGCT 8 cut(s) 25, 279, 314, 917, 980, 1138, 1165, 1313
Alw21I GWGCWC 2 cut(s) 503, 1395
Alw26I GTCTC 2 cut(s) 461, 479
Alw44I GTGCAC 1 cut(s) 1391
AlwI GGATC 2 cut(s) 585, 739
AlwNI CAGNNNCTG 1 cut(s) 1420
Aor13HI TCCGGA 1 cut(s) 816
AoxI GGCC 2 cut(s) 46, 1233
ApaLI GTGCAC 1 cut(s) 1391
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 3 cut(s) 207, 318, 736
Asp700I GAANNNNTTC 1 cut(s) 999
AspA2I CCTAGG 1 cut(s) 1321
AspS9I GGNCC 3 cut(s) 46, 197, 1234
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 1321
BaeGI GKGCMC 1 cut(s) 1395
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 2 cut(s) 503, 1395
BbvI GCAGC 1 cut(s) 232
BccI CCATC 4 cut(s) 344, 568, 595, 1090
BceAI ACGGC 2 cut(s) 1191, 1316
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciT130I CCWGG 1 cut(s) 1232
BciVI GTATCC 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 461, 479
BfaI CTAG 3 cut(s) 276, 1322, 1407
BfmI CTRYAG 3 cut(s) 218, 595, 986
BfrI CTTAAG 2 cut(s) 527, 1112
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 2 cut(s) 107, 221
BlnI CCTAGG 1 cut(s) 1321
BlsI GCNGC 2 cut(s) 108, 222
Bme1390I CCNGG 1 cut(s) 1232
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 46, 197, 1234
BmiI GGNNCC 5 cut(s) 884, 996, 1119, 1236, 1318
BmrFI CCNGG 1 cut(s) 1232
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 4 cut(s) 145, 257, 544, 1138
BmuI ACTGGG 1 cut(s) 556
BoxI GACNNNNGTC 1 cut(s) 1247
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 3 cut(s) 326, 630, 901
BpuEI CTTGAG 3 cut(s) 66, 831, 874
BsaJI CCNNGG 5 cut(s) 6, 377, 676, 748, 1321
BsaWI WCCGGW 2 cut(s) 816, 1281
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 682, 1338
Bse1I ACTGG 3 cut(s) 309, 551, 884
Bse3DI GCAATG 4 cut(s) 251, 276, 557, 1251
BseAI TCCGGA 1 cut(s) 816
BseBI CCWGG 1 cut(s) 1232
BseDI CCNNGG 5 cut(s) 6, 377, 676, 748, 1321
BseGI GGATG 6 cut(s) 559, 606, 1082, 1153, 1227, 1296
BseLI CCNNNNNNNGG 3 cut(s) 434, 682, 1338
BseMI GCAATG 4 cut(s) 251, 276, 557, 1251
BseMII CTCAG 4 cut(s) 516, 576, 1180, 1236
BseNI ACTGG 3 cut(s) 309, 551, 884
BseSI GKGCMC 1 cut(s) 1395
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 891
BshFI GGCC 2 cut(s) 48, 1235
BsiHKAI GWGCWC 2 cut(s) 503, 1395
BsiSI CCGG 2 cut(s) 817, 1282
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 3 cut(s) 434, 682, 1338
BsmAI GTCTC 2 cut(s) 461, 479
BsmFI GGGAC 1 cut(s) 640
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 2 cut(s) 48, 1235
Bsp1286I GDGCHC 2 cut(s) 503, 1395
Bsp13I TCCGGA 1 cut(s) 816
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
Bsp19I CCATGG 1 cut(s) 748
BspACI CCGC 2 cut(s) 106, 889
BspANI GGCC 2 cut(s) 48, 1235
BspCNI CTCAG 4 cut(s) 515, 577, 1179, 1237
BspEI TCCGGA 1 cut(s) 816
BspFNI CGCG 1 cut(s) 891
BspLI GGNNCC 5 cut(s) 884, 996, 1119, 1236, 1318
BspMAI CTGCAG 2 cut(s) 222, 599
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 2 cut(s) 585, 739
BspTI CTTAAG 2 cut(s) 527, 1112
BsrBI CCGCTC 1 cut(s) 106
BsrDI GCAATG 4 cut(s) 251, 276, 557, 1251
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 3 cut(s) 309, 551, 884
BssECI CCNNGG 5 cut(s) 6, 377, 676, 748, 1321
BssMI GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
BssNAI GTATAC 1 cut(s) 182
BssT1I CCWWGG 4 cut(s) 6, 377, 748, 1321
Bst1107I GTATAC 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 1232
Bst4CI ACNGT 2 cut(s) 498, 538
Bst6I CTCTTC 1 cut(s) 1373
BstAFI CTTAAG 2 cut(s) 527, 1112
BstAUI TGTACA 1 cut(s) 901
BstC8I GCNNGC 2 cut(s) 652, 1311
BstDEI CTNAG 5 cut(s) 502, 585, 955, 1166, 1245
BstDSI CCRYGG 2 cut(s) 676, 748
BstF5I GGATG 6 cut(s) 559, 606, 1082, 1153, 1227, 1296
BstFNI CGCG 1 cut(s) 891
BstKTI GATC 7 cut(s) 368, 580, 642, 747, 826, 837, 1385
BstMAI GTCTC 2 cut(s) 461, 479
BstMBI GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
BstMWI GCNNNNNNNGC 1 cut(s) 1310
BstNI CCWGG 1 cut(s) 1232
BstNSI RCATGY 3 cut(s) 79, 654, 1262
BstPAI GACNNNNGTC 1 cut(s) 1247
BstSCI CCNGG 1 cut(s) 1230
BstSFI CTRYAG 3 cut(s) 218, 595, 986
BstSLI GKGCMC 1 cut(s) 1395
BstUI CGCG 1 cut(s) 891
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BstZ17I GTATAC 1 cut(s) 182
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 2 cut(s) 48, 1235
BtgI CCRYGG 2 cut(s) 676, 748
BtsCI GGATG 6 cut(s) 559, 606, 1082, 1153, 1227, 1296
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 1 cut(s) 592
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 2 cut(s) 652, 1311
CaiI CAGNNNCTG 1 cut(s) 1420
Cfr13I GGNCC 3 cut(s) 46, 197, 1234
CseI GACGC 1 cut(s) 880
Csp6I GTAC 2 cut(s) 902, 1100
CspCI CAANNNNNGTGG 2 cut(s) 1075, 1110
CviQI GTAC 2 cut(s) 902, 1100
DdeI CTNAG 5 cut(s) 502, 585, 955, 1166, 1245
DpnI GATC 7 cut(s) 367, 579, 641, 746, 825, 836, 1384
DpnII GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
Eam1104I CTCTTC 1 cut(s) 1373
EarI CTCTTC 1 cut(s) 1373
Eco130I CCWWGG 4 cut(s) 6, 377, 748, 1321
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 7 cut(s) 264, 344, 500, 692, 782, 1118, 1320
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 1230
EcoRV GATATC 1 cut(s) 948
EcoT14I CCWWGG 4 cut(s) 6, 377, 748, 1321
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 4 cut(s) 6, 377, 748, 1321
FalI AAGNNNNNCTT 2 cut(s) 1116, 1148
FaqI GGGAC 1 cut(s) 640
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 107, 221
FokI GGATG 6 cut(s) 566, 613, 1069, 1160, 1214, 1303
Fsp4HI GCNGC 2 cut(s) 107, 221
FspBI CTAG 3 cut(s) 276, 1322, 1407
GluI GCNGC 2 cut(s) 107, 221
GsuI CTGGAG 3 cut(s) 326, 630, 901
HaeIII GGCC 2 cut(s) 48, 1235
HapII CCGG 2 cut(s) 817, 1282
HgaI GACGC 1 cut(s) 880
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 8 cut(s) 162, 214, 283, 438, 753, 793, 802, 1187
HpaII CCGG 2 cut(s) 817, 1282
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 7 cut(s) 150, 182, 703, 877, 902, 1199, 1393
Hpy188I TCNGA 9 cut(s) 56, 324, 505, 666, 792, 801, 834, 1169, 1416
Hpy188III TCNNGA 8 cut(s) 166, 369, 416, 492, 542, 817, 1121, 1184
Hpy8I GTNNAC 7 cut(s) 150, 182, 703, 877, 902, 1199, 1393
Hpy99I CGWCG 1 cut(s) 896
HpyAV CCTTC 6 cut(s) 221, 438, 475, 716, 961, 985
HpyCH4III ACNGT 2 cut(s) 498, 538
HpyF10VI GCNNNNNNNGC 1 cut(s) 1310
HpyF3I CTNAG 5 cut(s) 502, 585, 955, 1166, 1245
Kpn2I TCCGGA 1 cut(s) 816
Kzo9I GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
LmnI GCTCC 3 cut(s) 678, 882, 922
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 4 cut(s) 145, 257, 544, 1138
MaeI CTAG 3 cut(s) 276, 1322, 1407
MaeIII GTNAC 3 cut(s) 396, 404, 1267
MalI GATC 7 cut(s) 367, 579, 641, 746, 825, 836, 1384
MbiI CCGCTC 1 cut(s) 106
MboI GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
MboII GAAGA 8 cut(s) 50, 347, 353, 650, 788, 1124, 1136, 1390
MfeI CAATTG 2 cut(s) 1004, 1209
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 503, 1395
MlyI GAGTC 4 cut(s) 208, 277, 447, 747
MmeI TCCRAC 1 cut(s) 34
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 1 cut(s) 816
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 4 cut(s) 528, 1107, 1113, 1335
MslI CAYNNNNRTG 1 cut(s) 119
MspCI CTTAAG 2 cut(s) 527, 1112
MspI CCGG 2 cut(s) 817, 1282
MspR9I CCNGG 1 cut(s) 1232
MunI CAATTG 2 cut(s) 1004, 1209
Mva1269I GAATGC 1 cut(s) 1210
MvaI CCWGG 1 cut(s) 1232
MvnI CGCG 1 cut(s) 891
MwoI GCNNNNNNNGC 1 cut(s) 1310
NcoI CCATGG 1 cut(s) 748
NdeI CATATG 1 cut(s) 288
NdeII GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
NlaIV GGNNCC 5 cut(s) 884, 996, 1119, 1236, 1318
NmeAIII GCCGAG 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 3 cut(s) 79, 654, 1262
PaeI GCATGC 1 cut(s) 654
PctI GAATGC 1 cut(s) 1210
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 4 cut(s) 162, 793, 802, 1187
PkrI GCNGC 2 cut(s) 108, 222
PleI GAGTC 4 cut(s) 208, 277, 446, 747
PpsI GAGTC 4 cut(s) 208, 277, 446, 747
PshAI GACNNNNGTC 1 cut(s) 1247
Psp6I CCWGG 1 cut(s) 1230
PspGI CCWGG 1 cut(s) 1230
PspN4I GGNNCC 5 cut(s) 884, 996, 1119, 1236, 1318
PspPI GGNCC 3 cut(s) 46, 197, 1234
PstI CTGCAG 2 cut(s) 222, 599
PstNI CAGNNNCTG 1 cut(s) 1420
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 2 cut(s) 903, 1101
RsaNI GTAC 2 cut(s) 902, 1100
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 4 cut(s) 528, 1107, 1113, 1335
SatI GCNGC 2 cut(s) 107, 221
Sau3AI GATC 7 cut(s) 365, 577, 639, 744, 823, 834, 1382
Sau96I GGNCC 3 cut(s) 46, 197, 1234
SchI GAGTC 4 cut(s) 208, 277, 447, 747
ScrFI CCNGG 1 cut(s) 1232
SduI GDGCHC 2 cut(s) 503, 1395
SfaNI GCATC 4 cut(s) 145, 257, 544, 1138
SfcI CTRYAG 3 cut(s) 218, 595, 986
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 5 cut(s) 81, 527, 846, 853, 1112
SmoI CTYRAG 5 cut(s) 81, 527, 846, 853, 1112
SphI GCATGC 1 cut(s) 654
SsiI CCGC 2 cut(s) 106, 889
SspI AATATT 1 cut(s) 446
SspMI CTAG 3 cut(s) 276, 1322, 1407
StyD4I CCNGG 1 cut(s) 1230
StyI CCWWGG 4 cut(s) 6, 377, 748, 1321
TaaI ACNGT 2 cut(s) 498, 538
TaqI TCGA 5 cut(s) 72, 167, 193, 364, 441
TatI WGTACW 1 cut(s) 901
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 4 cut(s) 162, 793, 802, 1187
Tru1I TTAA 4 cut(s) 528, 1107, 1113, 1335
Tru9I TTAA 4 cut(s) 528, 1107, 1113, 1335
TscAI CASTG 1 cut(s) 599
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 5 cut(s) 240, 251, 347, 522, 1051
TspGWI ACGGA 2 cut(s) 665, 909
TspRI CASTG 1 cut(s) 599
Vha464I CTTAAG 2 cut(s) 527, 1112
VneI GTGCAC 1 cut(s) 1391
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 3 cut(s) 207, 318, 736
XceI RCATGY 3 cut(s) 79, 654, 1262
XcmI CCANNNNNNNNNTGG 2 cut(s) 207, 347
XmaJI CCTAGG 1 cut(s) 1321
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 3 cut(s) 276, 1322, 1407
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.