Prupe.4G243700_v2.0.a1

NAD-dependent protein deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013314
Physical Location & Seq
Reverse (-)
16112216 .. 16120936
8721 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G243700.1

Sequence Viewer

Length: 1416 bp
ATGTCCTTGGGTTATGCAGAGAAGCTTTCCTACATAGAAGATGTGGGCCAAGTCGGAATGACTGAACATTTCGACCCACCTCCCGTTTTGCAAGAAAAAATTGAACGGCTCGCCATGTTGGTACAAAAGAGCAAGCATCTAGTGGTGTTTACAGGTGCAGGAATTTCGACTTCTTGTGGTATACCTGATTTTCGAGGTCCAAAGGGAATTTGGACTCTGCAGCGTGAAGGCAAAGCATTGCCTGAAGCATCATTGCCCTTTCATCGTGCAATGCCAAGTATGACTCATATGGCTTTGGTTGAATTGGAGAGGGCTGGAATTTTGAAGTTTGTTATTAGCCAGAATGTTGATGGCCTTCATCTTCGATCTGGAATACCGAGGGAGAAACTTGCCGAGTTACATGGGAACTCCTTTTTGGAAACCTGCCCTTCTTGTGGAGTTGAGTATTTGAGGGATTTTGAGGTGGAGACTATTGGATTGAAGGAGACTTCAAGACGGTGCTCAGATAAAAAATGTGGAGCACGGCTTAAGGATACAGTTCTTGACTGGGAGGATGCATTGCCCTCAAAGGAGATGAATCTGGCTGAGAAGCACTGCAGGATAGCTGACGTTGTTTTATGTTTGGGGACAAGTTTGCAGATCACTCCTGCATGCAACCTTCCTCTAAAATCTCTCCGTGGTGGGGGGAAGATTGTAATTGTCAACCTTCAGAAAACTCCGAAGGACAAGAAAGCAAATTTATTGATCCATGGGCTTGTAGATAAGGTTATTTCAGGTGTCATGGACTTCCTAAATCTTCAGATTCCTCCATTTGTCCGGATAGATTTTTTTCAGATCATTCTAACTCAAGCCTTGAGTTCAGATAAAAAAAATGTGAACTGGAACCTCCGGGTAGCAAGTGTACATGGACAGAAAGCTCCATTGCCATTCATTAAATCTATTGAGATATCCTTTTTAGAAAATCAAGGGTATAAGTCAGCTATTTTACAGAAGGAACCATTTCAACTGAAAAGGAGAACATTACAAGCAAAGTCATTTGAAATGGTTATGAAATTCAACTTCATAGATAGTTGTGGTTGTCCATCCACAGAAATTATTGTCCCTCTTAATTTTAAGGTTTCAAGAGACTGCTTCGAGCTTGATAAGGATGCCATATTGCAAAAGCTCAGACACACAGCAATTCAAGAATCATGCTGTGGGCAGAATGCAGTTGTTGAGAGAAATGCCATGTTGACCCCAAAAACTGAGGTCATTGTATATGCCATTGTAACCAATGTTATCCGGTATAAGAAGACCACTGAAGCCTTGGAAGCTGATTCTTTAGGTAATGGTGTTAAAAGGCGAAGGGAAAGTGCAAATGGTACTGAAACATCTAGGAAGCGATCAAAAGTGCACAGGCGCAAACCTAGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05230 map04714 map05230
Pfam Domains
Protein Families
SIR2

Protein Analysis

472

Amino Acids

52.77

Weight (kDa)

9.28

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55760
fragaria_vesca FvH4_3g29170 FvH4_3g29170
malus_domestica MD03G1179400.v1.1 MD11G1199100.v1.1
prunus_persica Prupe.4G243700_v2.0.a1 Prupe.4G243700_v2.0.a1
pyrus_communis pycom03g13540 pycom11g17170
rosa_chinensis RchiOBHm_Chr5g0053471
rosa_laevigata RLG00000034885
rosa_roxburghii Rroxscaffold_1G00026940
rosa_rugosa Rorug05G0280200
rosa_samantha Rh5AG351400 Rh5BG363600 Rh5DG378300 Rh7BG051900
rosa_wichuraiana Rw5G033230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 181
AccIII TCCGGA 1 cut(s) 816
AclWI GGATC 1 cut(s) 739
AcsI RAATTY 5 cut(s) 162, 207, 318, 736, 1052
AcuI CTGAAG 4 cut(s) 264, 692, 782, 1320
AfaI GTAC 3 cut(s) 123, 903, 1363
AfiI CCNNNNNNNGG 2 cut(s) 434, 682
AflII CTTAAG 1 cut(s) 527
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 7 cut(s) 25, 605, 917, 980, 1138, 1165, 1313
AluI AGCT 7 cut(s) 25, 605, 917, 980, 1138, 1165, 1313
Alw21I GWGCWC 3 cut(s) 503, 523, 1395
Alw26I GTCTC 3 cut(s) 461, 479, 1119
Alw44I GTGCAC 1 cut(s) 1391
AlwI GGATC 1 cut(s) 739
Aor13HI TCCGGA 1 cut(s) 816
AoxI GGCC 2 cut(s) 46, 352
ApaLI GTGCAC 1 cut(s) 1391
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 5 cut(s) 162, 207, 318, 736, 1052
Asp700I GAANNNNTTC 1 cut(s) 999
AspA2I CCTAGG 1 cut(s) 1406
AspLEI GCGC 1 cut(s) 1401
AspS9I GGNCC 2 cut(s) 46, 197
AsuC2I CCSGG 1 cut(s) 890
AvaII GGWCC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 1406
BaeGI GKGCMC 1 cut(s) 1395
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbsI GAAGAC 1 cut(s) 1298
Bbv12I GWGCWC 3 cut(s) 503, 523, 1395
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 344, 1090
BceAI ACGGC 2 cut(s) 122, 539
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 461, 479, 1119
BfaI CTAG 3 cut(s) 140, 1374, 1407
BfmI CTRYAG 2 cut(s) 218, 595
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 1 cut(s) 221
BlnI CCTAGG 1 cut(s) 1406
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 46, 197
BmiI GGNNCC 2 cut(s) 884, 996
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 4 cut(s) 145, 257, 544, 1138
BmuI ACTGGG 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 1298
BpuEI CTTGAG 2 cut(s) 831, 874
BpuMI CCSGG 1 cut(s) 890
BsaJI CCNNGG 6 cut(s) 6, 377, 676, 748, 1305, 1406
BsaWI WCCGGW 2 cut(s) 816, 1281
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 682
Bse1I ACTGG 2 cut(s) 551, 884
Bse3DI GCAATG 5 cut(s) 236, 251, 276, 557, 920
BseAI TCCGGA 1 cut(s) 816
BseDI CCNNGG 6 cut(s) 6, 377, 676, 748, 1305, 1406
BseGI GGATG 3 cut(s) 559, 1082, 1153
BseLI CCNNNNNNNGG 2 cut(s) 434, 682
BseMI GCAATG 5 cut(s) 236, 251, 276, 557, 920
BseMII CTCAG 4 cut(s) 516, 576, 1180, 1236
BseNI ACTGG 2 cut(s) 551, 884
BseSI GKGCMC 1 cut(s) 1395
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 2 cut(s) 48, 354
BsiHKAI GWGCWC 3 cut(s) 503, 523, 1395
BsiSI CCGG 3 cut(s) 817, 889, 1282
BslFI GGGAC 2 cut(s) 640, 1085
BslI CCNNNNNNNGG 2 cut(s) 434, 682
BsmAI GTCTC 3 cut(s) 461, 479, 1119
BsmFI GGGAC 2 cut(s) 640, 1085
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 2 cut(s) 48, 354
Bsp1286I GDGCHC 3 cut(s) 503, 523, 1395
Bsp13I TCCGGA 1 cut(s) 816
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 5 cut(s) 365, 639, 744, 834, 1382
Bsp19I CCATGG 1 cut(s) 748
BspANI GGCC 2 cut(s) 48, 354
BspCNI CTCAG 4 cut(s) 515, 577, 1179, 1237
BspEI TCCGGA 1 cut(s) 816
BspLI GGNNCC 2 cut(s) 884, 996
BspMAI CTGCAG 2 cut(s) 222, 599
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 1 cut(s) 739
BspTI CTTAAG 1 cut(s) 527
BsrDI GCAATG 5 cut(s) 236, 251, 276, 557, 920
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 2 cut(s) 551, 884
BssECI CCNNGG 6 cut(s) 6, 377, 676, 748, 1305, 1406
BssMI GATC 5 cut(s) 365, 639, 744, 834, 1382
BssNAI GTATAC 1 cut(s) 182
BssT1I CCWWGG 4 cut(s) 6, 748, 1305, 1406
Bst1107I GTATAC 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 498, 538
BstAFI CTTAAG 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 901
BstC8I GCNNGC 3 cut(s) 111, 134, 652
BstDEI CTNAG 4 cut(s) 502, 585, 1166, 1245
BstDSI CCRYGG 2 cut(s) 676, 748
BstF5I GGATG 3 cut(s) 559, 1082, 1153
BstHHI GCGC 1 cut(s) 1401
BstKTI GATC 5 cut(s) 368, 642, 747, 837, 1385
BstMAI GTCTC 3 cut(s) 461, 479, 1119
BstMBI GATC 5 cut(s) 365, 639, 744, 834, 1382
BstMWI GCNNNNNNNGC 1 cut(s) 1310
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 2 cut(s) 218, 595
BstSLI GKGCMC 1 cut(s) 1395
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 1298
BstZ17I GTATAC 1 cut(s) 182
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 2 cut(s) 48, 354
BtgI CCRYGG 2 cut(s) 676, 748
BtsCI GGATG 3 cut(s) 559, 1082, 1153
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 2 cut(s) 592, 1296
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 3 cut(s) 111, 134, 652
CfoI GCGC 1 cut(s) 1401
Cfr13I GGNCC 2 cut(s) 46, 197
Csp6I GTAC 3 cut(s) 122, 902, 1362
CviAII CATG 8 cut(s) 115, 401, 651, 749, 781, 905, 1191, 1228
CviQI GTAC 3 cut(s) 122, 902, 1362
DdeI CTNAG 4 cut(s) 502, 585, 1166, 1245
DpnI GATC 5 cut(s) 367, 641, 746, 836, 1384
DpnII GATC 5 cut(s) 365, 639, 744, 834, 1382
Eco130I CCWWGG 4 cut(s) 6, 748, 1305, 1406
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 4 cut(s) 264, 692, 782, 1320
EcoRV GATATC 1 cut(s) 948
EcoT14I CCWWGG 4 cut(s) 6, 748, 1305, 1406
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 4 cut(s) 6, 748, 1305, 1406
FaeI CATG 8 cut(s) 118, 404, 654, 752, 784, 908, 1194, 1231
FaqI GGGAC 2 cut(s) 640, 1085
FatI CATG 8 cut(s) 114, 400, 650, 748, 780, 904, 1190, 1227
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 3 cut(s) 566, 1069, 1160
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 3 cut(s) 140, 1374, 1407
GlaI GCGC 1 cut(s) 1400
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 48, 354
HapII CCGG 3 cut(s) 817, 889, 1282
HhaI GCGC 1 cut(s) 1401
Hin1II CATG 8 cut(s) 118, 404, 654, 752, 784, 908, 1194, 1231
Hin6I GCGC 1 cut(s) 1399
HinP1I GCGC 1 cut(s) 1399
HincII GTYRAC 2 cut(s) 703, 1233
HindII GTYRAC 2 cut(s) 703, 1233
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 6 cut(s) 214, 283, 577, 802, 1187, 1316
HpaII CCGG 3 cut(s) 817, 889, 1282
Hpy166II GTNNAC 7 cut(s) 150, 182, 703, 877, 902, 1233, 1393
Hpy188I TCNGA 8 cut(s) 56, 505, 711, 720, 801, 834, 862, 1169
Hpy188III TCNNGA 6 cut(s) 369, 492, 542, 817, 1122, 1184
Hpy8I GTNNAC 7 cut(s) 150, 182, 703, 877, 902, 1233, 1393
HpyAV CCTTC 9 cut(s) 221, 365, 438, 475, 668, 715, 716, 985, 1338
HpyCH4III ACNGT 2 cut(s) 498, 538
HpyCH4IV ACGT 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 1310
HpyF3I CTNAG 4 cut(s) 502, 585, 1166, 1245
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 8 cut(s) 118, 404, 654, 752, 784, 908, 1194, 1231
HspAI GCGC 1 cut(s) 1399
Kpn2I TCCGGA 1 cut(s) 816
Kzo9I GATC 5 cut(s) 365, 639, 744, 834, 1382
LmnI GCTCC 2 cut(s) 518, 922
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 4 cut(s) 145, 257, 544, 1138
MaeI CTAG 3 cut(s) 140, 1374, 1407
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 2 cut(s) 396, 1267
MalI GATC 5 cut(s) 367, 641, 746, 836, 1384
MboI GATC 5 cut(s) 365, 639, 744, 834, 1382
MboII GAAGA 5 cut(s) 50, 353, 700, 788, 1303
MhlI GDGCHC 3 cut(s) 503, 523, 1395
MlyI GAGTC 2 cut(s) 208, 277
MmeI TCCRAC 1 cut(s) 34
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 1 cut(s) 816
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 5 cut(s) 528, 933, 1107, 1113, 1335
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 3 cut(s) 817, 889, 1282
MspR9I CCNGG 1 cut(s) 890
Mva1269I GAATGC 1 cut(s) 1210
MwoI GCNNNNNNNGC 1 cut(s) 1310
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 1 cut(s) 748
NdeI CATATG 1 cut(s) 288
NdeII GATC 5 cut(s) 365, 639, 744, 834, 1382
NlaIII CATG 8 cut(s) 118, 404, 654, 752, 784, 908, 1194, 1231
NlaIV GGNNCC 2 cut(s) 884, 996
NmeAIII GCCGAG 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 654
PaeI GCATGC 1 cut(s) 654
PctI GAATGC 1 cut(s) 1210
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 4 cut(s) 577, 802, 1187, 1316
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 2 cut(s) 208, 277
PpsI GAGTC 2 cut(s) 208, 277
PspN4I GGNNCC 2 cut(s) 884, 996
PspPI GGNCC 2 cut(s) 46, 197
PstI CTGCAG 2 cut(s) 222, 599
RsaI GTAC 3 cut(s) 123, 903, 1363
RsaNI GTAC 3 cut(s) 122, 902, 1362
SaqAI TTAA 5 cut(s) 528, 933, 1107, 1113, 1335
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 5 cut(s) 365, 639, 744, 834, 1382
Sau96I GGNCC 2 cut(s) 46, 197
SchI GAGTC 2 cut(s) 208, 277
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 3 cut(s) 503, 523, 1395
SfaNI GCATC 4 cut(s) 145, 257, 544, 1138
SfcI CTRYAG 2 cut(s) 218, 595
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 3 cut(s) 527, 846, 853
SmoI CTYRAG 3 cut(s) 527, 846, 853
SphI GCATGC 1 cut(s) 654
SspMI CTAG 3 cut(s) 140, 1374, 1407
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 4 cut(s) 6, 748, 1305, 1406
TaaI ACNGT 2 cut(s) 498, 538
TaiI ACGT 1 cut(s) 612
TaqI TCGA 5 cut(s) 72, 167, 193, 364, 1134
TatI WGTACW 1 cut(s) 901
TfiI GAWTC 4 cut(s) 577, 802, 1187, 1316
Tru1I TTAA 5 cut(s) 528, 933, 1107, 1113, 1335
Tru9I TTAA 5 cut(s) 528, 933, 1107, 1113, 1335
TscAI CASTG 2 cut(s) 599, 1303
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 6 cut(s) 251, 347, 590, 919, 1051, 1064
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 2 cut(s) 599, 1303
Vha464I CTTAAG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 1391
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 5 cut(s) 162, 207, 318, 736, 1052
XceI RCATGY 1 cut(s) 654
XcmI CCANNNNNNNNNTGG 3 cut(s) 207, 347, 1303
XmaJI CCTAGG 1 cut(s) 1406
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 3 cut(s) 140, 1374, 1407
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.