FvH4_3g29170

NAD-dependent protein deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013314
Physical Location & Seq
Forward (+)
22286149 .. 22298287
12139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29170.t2

Sequence Viewer

Length: 1419 bp
ATGTCGTTGGGTTATGCAGAAAAACTTTCCTACATAGAAGATGTGGGCAGCGTCGGAATGTCTGAACATTTCGACGCACCTGACGTTCTGCAACAAAAGATTGAACAGCTTGCTTTGCTGGTACAGAAGAGTAAACATCTAGTGGTGTTTACAGGTGCAGGAATATCAACTTCTTGTGGTATACCTGATTTTCGAGGTCCAAAGGGAATTTGGACTCTTCAGCGTGAAGGCAAAGCGTTGCCAGAAGCATCACTGCCATTTCATCGTGCAAGGCCAAGCTTGACTCATATGGCTTTGGTTGCTCTGGAGAGGGCTGGCATACTGAAGTTTGTTATTAGCCAGAATGTTGACGGCCTCCATCTTCGATCTGGAATACCAAGGAAGAAACTAGCGGAGTTGCATGGTAACTCCTTCATGGAAGTCTGCCCTTCTTGTGGCATTGAGTATACACGGGATTTTGAGGTAGAAACTATTGGCCTAAAGGAGACTTCCAGAAGGTGCTCAGATGAAAGGTGCGGAGCGAGGCTTAAGGATACAGTTCTTGACTGGGAGGATGCATTGCCCTCAAAGGAGATGAATCCTGCAGAAAAGCACTGCAGAATGGCTGATGTTGTTTTGTGTTTGGGAACAAGTTTGCAGATCACTCCAGCATGCAACCTACCTTTGAGATCACTCCGTGGTGGGGGAAAGATTGTAATTGTTAACCTTCAGAAAACTCCAAAGGACAAGAAGGCAGCTTTACTGATCCATGGGCTTGTAGATAAGGTTATTTCAGGTGTCATGGACATTCTAAATCTACAGATTCCTCCATTTGTTCGGATAGATCTTTTTCAGATCATTCTAACTCAAGCCTTGAGTATAGATGAAAAGTATGTCAACTGGAATCTCCGGGTAGCAAGTGTACATGGACTTAAAGCTCCATTGCCATTCATCAAATCTATTGAGATATCCTTCGTAGACAACAAAGAATATAAAGGAGCTATTCTACAGAATGAGCCATTTCAACTGAAAAGGAGAACCTTACAGTCAAAATCAATCGAAATGGTTTTGAAATTCAACTTCATTGATGGTTGCGGTTGCCGATTCACAAAAATTAACTTGTCTGTCAATTGGGAGGTTTCAACAGACCTATTGAAGATTGATAAAGATGCCACAATGCAAAAGCTCAGAGATGCAGTTACTGATGAAACGTGCTGCGGCAAGAATGCTGTTATTGATAGAAACGTTATCACGAGCCCAAAAACTGAGGTTCTTATGTATGCCGTTGTAACCAATGTTGTCACATATAAGAAGACCACCACTGAAGCTGTGAAAGCTGGCACTCTAAGTAATGGGGTTAAAAGGCGGAAAGACGATGCAAATGGTCCTGCAACATCTAAGAAGCGATCAAAAGTGCACAGGCGCAAATCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05230 map04714 map05230
Pfam Domains
Protein Families
SIR2

Protein Analysis

473

Amino Acids

52.46

Weight (kDa)

9.34

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 87 - 216 2e-20 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55760
fragaria_vesca FvH4_3g29170 FvH4_3g29170
malus_domestica MD03G1179400.v1.1 MD11G1199100.v1.1
prunus_persica Prupe.4G243700_v2.0.a1 Prupe.4G243700_v2.0.a1
pyrus_communis pycom03g13540 pycom11g17170
rosa_chinensis RchiOBHm_Chr5g0053471
rosa_laevigata RLG00000034885
rosa_roxburghii Rroxscaffold_1G00026940
rosa_rugosa Rorug05G0280200
rosa_samantha Rh5AG351400 Rh5BG363600 Rh5DG378300 Rh7BG051900
rosa_wichuraiana Rw5G033230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 181, 446, 957
AciI CCGC 5 cut(s) 392, 516, 1074, 1197, 1345
AclI AACGTT 1 cut(s) 1224
AclWI GGATC 1 cut(s) 739
AcsI RAATTY 2 cut(s) 207, 1052
AcuI CTGAAG 4 cut(s) 203, 344, 692, 1323
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 2 cut(s) 123, 903
AfiI CCNNNNNNNGG 2 cut(s) 434, 682
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 6 cut(s) 104, 1004, 1051, 1057, 1122, 1135
AluBI AGCT 8 cut(s) 109, 279, 737, 917, 980, 1165, 1307, 1316
AluI AGCT 8 cut(s) 109, 279, 737, 917, 980, 1165, 1307, 1316
Alw21I GWGCWC 2 cut(s) 503, 1398
Alw26I GTCTC 1 cut(s) 479
Alw44I GTGCAC 1 cut(s) 1394
AlwI GGATC 1 cut(s) 739
AlwNI CAGNNNCTG 1 cut(s) 1181
AoxI GGCC 3 cut(s) 272, 352, 475
ApaLI GTGCAC 1 cut(s) 1394
ApeKI GCWGC 3 cut(s) 48, 734, 1194
ApoI RAATTY 2 cut(s) 207, 1052
AspLEI GCGC 1 cut(s) 1404
AspS9I GGNCC 2 cut(s) 197, 1364
AsuC2I CCSGG 1 cut(s) 890
AvaII GGWCC 2 cut(s) 197, 1364
BaeGI GKGCMC 1 cut(s) 1398
BanII GRGCYC 1 cut(s) 1238
BauI CACGAG 1 cut(s) 1231
BbsI GAAGAC 1 cut(s) 1298
Bbv12I GWGCWC 2 cut(s) 503, 1398
BbvI GCAGC 3 cut(s) 60, 746, 1181
BccI CCATC 2 cut(s) 366, 1061
BceAI ACGGC 2 cut(s) 367, 1247
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 3 cut(s) 140, 389, 1410
BfmI CTRYAG 4 cut(s) 582, 595, 797, 986
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 526
BglII AGATCT 1 cut(s) 823
BisI GCNGC 4 cut(s) 49, 735, 1195, 1198
BlsI GCNGC 4 cut(s) 50, 736, 1196, 1199
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 2 cut(s) 197, 1364
BmgT120I GGNCC 2 cut(s) 197, 1364
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 5 cut(s) 257, 544, 1138, 1162, 1345
BmuI ACTGGG 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 1298
BpmI CTGGAG 2 cut(s) 326, 630
BpuEI CTTGAG 2 cut(s) 831, 874
BpuMI CCSGG 1 cut(s) 890
BsaJI CCNNGG 3 cut(s) 377, 676, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 682
Bse1I ACTGG 2 cut(s) 551, 884
Bse3DI GCAATG 2 cut(s) 557, 920
BseDI CCNNGG 3 cut(s) 377, 676, 748
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 434, 682
BseMI GCAATG 2 cut(s) 557, 920
BseMII CTCAG 3 cut(s) 516, 1180, 1236
BseNI ACTGG 2 cut(s) 551, 884
BseSI GKGCMC 1 cut(s) 1398
BseXI GCAGC 3 cut(s) 60, 746, 1181
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 3 cut(s) 274, 354, 477
BsiHKAI GWGCWC 2 cut(s) 503, 1398
BsiSI CCGG 1 cut(s) 889
BslI CCNNNNNNNGG 2 cut(s) 434, 682
BsmAI GTCTC 1 cut(s) 479
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 3 cut(s) 274, 354, 477
Bsp1286I GDGCHC 3 cut(s) 503, 1238, 1398
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
Bsp19I CCATGG 1 cut(s) 748
BspACI CCGC 5 cut(s) 392, 516, 1074, 1197, 1345
BspANI GGCC 3 cut(s) 274, 354, 477
BspCNI CTCAG 3 cut(s) 515, 1179, 1237
BspMAI CTGCAG 2 cut(s) 586, 599
BspPI GGATC 1 cut(s) 739
BspTI CTTAAG 1 cut(s) 527
BsrDI GCAATG 2 cut(s) 557, 920
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 2 cut(s) 551, 884
BssECI CCNNGG 3 cut(s) 377, 676, 748
BssMI GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
BssNAI GTATAC 2 cut(s) 182, 447
BssSI CACGAG 1 cut(s) 1231
BssT1I CCWWGG 2 cut(s) 377, 748
Bst1107I GTATAC 2 cut(s) 182, 447
Bst2BI CACGAG 1 cut(s) 1231
Bst4CI ACNGT 2 cut(s) 538, 1026
Bst6I CTCTTC 2 cut(s) 122, 222
BstAFI CTTAAG 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 901
BstC8I GCNNGC 4 cut(s) 111, 316, 652, 1318
BstDEI CTNAG 5 cut(s) 502, 1166, 1245, 1325, 1377
BstDSI CCRYGG 2 cut(s) 676, 748
BstF5I GGATG 1 cut(s) 559
BstHHI GCGC 1 cut(s) 1404
BstKTI GATC 7 cut(s) 368, 642, 671, 747, 826, 837, 1388
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
BstMWI GCNNNNNNNGC 3 cut(s) 115, 299, 1313
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 4 cut(s) 582, 595, 797, 986
BstSLI GKGCMC 1 cut(s) 1398
BstV1I GCAGC 3 cut(s) 60, 746, 1181
BstV2I GAAGAC 1 cut(s) 1298
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BstZ17I GTATAC 2 cut(s) 182, 447
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 3 cut(s) 274, 354, 477
BtgI CCRYGG 2 cut(s) 676, 748
BtsCI GGATG 1 cut(s) 559
BtsI GCAGTG 2 cut(s) 251, 592
BtsIMutI CAGTG 3 cut(s) 251, 592, 1299
Cac8I GCNNGC 4 cut(s) 111, 316, 652, 1318
CaiI CAGNNNCTG 1 cut(s) 1181
CfoI GCGC 1 cut(s) 1404
Cfr13I GGNCC 2 cut(s) 197, 1364
CseI GACGC 2 cut(s) 40, 83
Csp6I GTAC 2 cut(s) 122, 902
CviAII CATG 6 cut(s) 401, 415, 651, 749, 781, 905
CviQI GTAC 2 cut(s) 122, 902
DdeI CTNAG 5 cut(s) 502, 1166, 1245, 1325, 1377
DpnI GATC 7 cut(s) 367, 641, 670, 746, 825, 836, 1387
DpnII GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
DraIII CACNNNGTG 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 122, 222
EarI CTCTTC 2 cut(s) 122, 222
EciI GGCGGA 1 cut(s) 1360
Eco130I CCWWGG 2 cut(s) 377, 748
Eco24I GRGCYC 1 cut(s) 1238
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 2 cut(s) 197, 1364
Eco57I CTGAAG 4 cut(s) 203, 344, 692, 1323
EcoRV GATATC 1 cut(s) 948
EcoT14I CCWWGG 2 cut(s) 377, 748
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 1238
ErhI CCWWGG 2 cut(s) 377, 748
FaeI CATG 6 cut(s) 404, 418, 654, 752, 784, 908
FatI CATG 6 cut(s) 400, 414, 650, 748, 780, 904
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 3 cut(s) 181, 446, 957
Fnu4HI GCNGC 4 cut(s) 49, 735, 1195, 1198
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 1 cut(s) 1238
Fsp4HI GCNGC 4 cut(s) 49, 735, 1195, 1198
FspBI CTAG 3 cut(s) 140, 389, 1410
GlaI GCGC 1 cut(s) 1403
GluI GCNGC 4 cut(s) 49, 735, 1195, 1198
GsuI CTGGAG 2 cut(s) 326, 630
HaeIII GGCC 3 cut(s) 274, 354, 477
HapII CCGG 1 cut(s) 889
HgaI GACGC 2 cut(s) 40, 83
HhaI GCGC 1 cut(s) 1404
Hin1II CATG 6 cut(s) 404, 418, 654, 752, 784, 908
Hin6I GCGC 1 cut(s) 1402
HinP1I GCGC 1 cut(s) 1402
HincII GTYRAC 3 cut(s) 349, 703, 877
HindII GTYRAC 3 cut(s) 349, 703, 877
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 6 cut(s) 214, 283, 577, 802, 883, 1083
HpaI GTTAAC 1 cut(s) 703
HpaII CCGG 1 cut(s) 889
Hpy188I TCNGA 7 cut(s) 56, 64, 505, 711, 819, 834, 1169
Hpy188III TCNNGA 5 cut(s) 305, 369, 492, 542, 1231
Hpy99I CGWCG 2 cut(s) 56, 77
HpyAV CCTTC 7 cut(s) 221, 421, 438, 489, 716, 724, 961
HpyCH4III ACNGT 2 cut(s) 538, 1026
HpyCH4IV ACGT 3 cut(s) 84, 1190, 1224
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 299, 1313
HpyF3I CTNAG 5 cut(s) 502, 1166, 1245, 1325, 1377
HpySE526I ACGT 3 cut(s) 84, 1190, 1224
Hsp92II CATG 6 cut(s) 404, 418, 654, 752, 784, 908
HspAI GCGC 1 cut(s) 1402
KspAI GTTAAC 1 cut(s) 703
Kzo9I GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
LmnI GCTCC 3 cut(s) 518, 922, 977
Lsp1109I GCAGC 3 cut(s) 60, 746, 1181
LweI GCATC 5 cut(s) 257, 544, 1138, 1162, 1345
MaeI CTAG 3 cut(s) 140, 389, 1410
MaeII ACGT 3 cut(s) 84, 1190, 1224
MaeIII GTNAC 4 cut(s) 404, 1177, 1267, 1279
MalI GATC 7 cut(s) 367, 641, 670, 746, 825, 836, 1387
MboI GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
MboII GAAGA 7 cut(s) 50, 139, 209, 353, 394, 1147, 1303
MfeI CAATTG 1 cut(s) 1108
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 3 cut(s) 503, 1238, 1398
MluCI AATT 5 cut(s) 207, 696, 1052, 1092, 1108
MlyI GAGTC 2 cut(s) 208, 277
MmeI TCCRAC 1 cut(s) 34
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 5 cut(s) 528, 702, 912, 1095, 1338
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 1 cut(s) 1108
Mva1269I GAATGC 1 cut(s) 1210
MwoI GCNNNNNNNGC 3 cut(s) 115, 299, 1313
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 1 cut(s) 748
NdeI CATATG 1 cut(s) 288
NdeII GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
NlaIII CATG 6 cut(s) 404, 418, 654, 752, 784, 908
NmuCI GTSAC 1 cut(s) 1279
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 654
PaeI GCATGC 1 cut(s) 654
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 1210
PfeI GAWTC 4 cut(s) 577, 802, 883, 1083
PkrI GCNGC 4 cut(s) 50, 736, 1196, 1199
PleI GAGTC 2 cut(s) 208, 277
PpsI GAGTC 2 cut(s) 208, 277
Psp1406I AACGTT 1 cut(s) 1224
PspPI GGNCC 2 cut(s) 197, 1364
PstI CTGCAG 2 cut(s) 586, 599
PstNI CAGNNNCTG 1 cut(s) 1181
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 2 cut(s) 123, 903
RsaNI GTAC 2 cut(s) 122, 902
SaqAI TTAA 5 cut(s) 528, 702, 912, 1095, 1338
SatI GCNGC 4 cut(s) 49, 735, 1195, 1198
Sau3AI GATC 7 cut(s) 365, 639, 668, 744, 823, 834, 1385
Sau96I GGNCC 2 cut(s) 197, 1364
SchI GAGTC 2 cut(s) 208, 277
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 3 cut(s) 503, 1238, 1398
SfaNI GCATC 5 cut(s) 257, 544, 1138, 1162, 1345
SfcI CTRYAG 4 cut(s) 582, 595, 797, 986
SinI GGWCC 2 cut(s) 197, 1364
SmlI CTYRAG 3 cut(s) 527, 846, 853
SmoI CTYRAG 3 cut(s) 527, 846, 853
SphI GCATGC 1 cut(s) 654
Sse9I AATT 5 cut(s) 207, 696, 1052, 1092, 1108
SsiI CCGC 5 cut(s) 392, 516, 1074, 1197, 1345
SspMI CTAG 3 cut(s) 140, 389, 1410
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 2 cut(s) 377, 748
TaaI ACNGT 2 cut(s) 538, 1026
TaiI ACGT 3 cut(s) 87, 1193, 1227
TaqI TCGA 4 cut(s) 72, 193, 364, 1038
TasI AATT 5 cut(s) 207, 696, 1052, 1092, 1108
TatI WGTACW 1 cut(s) 901
TauI GCSGC 1 cut(s) 1200
TfiI GAWTC 4 cut(s) 577, 802, 883, 1083
Tru1I TTAA 5 cut(s) 528, 702, 912, 1095, 1338
Tru9I TTAA 5 cut(s) 528, 702, 912, 1095, 1338
TscAI CASTG 3 cut(s) 258, 599, 1306
TseFI GTSAC 1 cut(s) 1279
TseI GCWGC 3 cut(s) 48, 734, 1194
Tsp45I GTSAC 1 cut(s) 1279
TspDTI ATGAA 8 cut(s) 251, 403, 522, 590, 879, 919, 1051, 1200
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 3 cut(s) 258, 599, 1306
Vha464I CTTAAG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 1394
VpaK11BI GGWCC 2 cut(s) 197, 1364
XapI RAATTY 2 cut(s) 207, 1052
XceI RCATGY 1 cut(s) 654
XcmI CCANNNNNNNNNTGG 2 cut(s) 207, 365
XmiI GTMKAC 3 cut(s) 181, 446, 957
XspI CTAG 3 cut(s) 140, 389, 1410
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.