Rh5AG351400

NAD-dependent protein deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013314
Physical Location & Seq
Forward (+)
58215398 .. 58223675
8278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG351400.1

Sequence Viewer

Length: 1227 bp
ATGAATTCATGGGAAACTGATTTCCATTTACTAGTGCAGCGTGAAGGCAAAGCCTTGCCAGAAGCATCATTGCCATTTCATCGTGCAATGCCGAGCTTGACTCATATGGCTTTGGTTGCGCTGGAGAGGGCTGGCATACTGAAGTTTGTTATTAGCCAGAATGTTGATGGCCTCCATCTTCGATCTGGAATACCAAGGAAGAAACTTGCGGAGTTGCATGGTAACTCCTTTATGGAAGTCTGCCCTTCTTGTGGCATCGAGTATATGCGGGATTTTGAGGTAGAAACTATTGGCCTAAAGGAGACTTCCAGAAGGTGCTCAGATAAAAAGTGTGGAGCTAGGCTTAAGGATACAGTTCTTGACTGGGAGGATGCATTGCCCTCAAAGGAGATGAATCAGGCTGAAAAGCACTGCAGAATGGCTGATGTTGTTTTATGTTTGGGAACAAGTTTGCAGATAACACCAGCATGCAACCTACCTCTGAGATCACTCCGTGGTGGGGGAAAGATTGTAATTGTTAATCTTCAGAAAACTCCAAAGGACAAGAAGGCAACTTTACTGCTCCATGGGCTTGTAGATAAGGTTATTTCAGGTGTCTTGGACAGTCTAAATCTTCAGATTCCTCCATTTGTTCGGATAGATCTTTTTCAGATCATTCTAACTCAAGCATTGAGTATAGATGAAAAGTATGTGAACTGGAACCTCCGGGTAGCAAGTGTACATGGACTTAAAGCTCCATTGCCATTCATCAAATCTATTGAGATATCCTTTGTAGACAATCAAGATTATAAAGCAGCTATTCTACAGAACGAGCCATTTCAACTGAAAAGGAGAACCTCACAGTCAAAATCAATTGAAATGGTTTTGAAATTCAACTTCATTGATGGTTGTGGCTGTCCATTCACAGAGATTAACGTGTCTCTCAATTGGGAGGTTTCAACCGACCATTCTAAGCTTGATAAAGATGCCATATTGCAAAAGCTCAGAGACACAGCTACTGATGAATCATGCTGCGGCAAGAATGCTGTTGTTGAGAGAAATTTCATCCCTAGCCCAAAAACTGAGGTTCTTACGTATGCCATTGTAACCAACGTTGTCACATATAAGAAGACCACTGAAGCTGTGCAAGCTGACACTCTAAGTAATGGGGTTAAAAGGCGGAAGAACGATGGTCCTGCAACATCTAAGAAACGATCTAAAGTGCAAAGGCGCAAATCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05230 map04714 map05230
Pfam Domains
Protein Families
SIR2

Protein Analysis

408

Amino Acids

45.72

Weight (kDa)

9.24

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 26 - 155 3.6e-21 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55760
fragaria_vesca FvH4_3g29170 FvH4_3g29170
malus_domestica MD03G1179400.v1.1 MD11G1199100.v1.1
prunus_persica Prupe.4G243700_v2.0.a1 Prupe.4G243700_v2.0.a1
pyrus_communis pycom03g13540 pycom11g17170
rosa_chinensis RchiOBHm_Chr5g0053471
rosa_laevigata RLG00000034885
rosa_roxburghii Rroxscaffold_1G00026940
rosa_rugosa Rorug05G0280200
rosa_samantha Rh5AG351400 Rh5BG363600 Rh5DG378300 Rh7BG051900
rosa_wichuraiana Rw5G033230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 789
AccI GTMKAC 1 cut(s) 774
AciI CCGC 4 cut(s) 209, 268, 1014, 1159
AclI AACGTT 1 cut(s) 1092
AcsI RAATTY 3 cut(s) 4, 869, 1039
AcuI CTGAAG 4 cut(s) 161, 509, 599, 1137
AdeI CACNNNGTG 1 cut(s) 494
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 2 cut(s) 251, 499
AflII CTTAAG 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 5 cut(s) 821, 857, 868, 874, 939
AhlI ACTAGT 1 cut(s) 31
AluBI AGCT 9 cut(s) 96, 338, 734, 797, 955, 982, 995, 1121, 1130
AluI AGCT 9 cut(s) 96, 338, 734, 797, 955, 982, 995, 1121, 1130
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 3 cut(s) 296, 924, 981
AlwNI CAGNNNCTG 1 cut(s) 998
AoxI GGCC 2 cut(s) 169, 292
ApeKI GCWGC 3 cut(s) 37, 794, 1011
ApoI RAATTY 3 cut(s) 4, 869, 1039
AspLEI GCGC 2 cut(s) 121, 1212
AspS9I GGNCC 1 cut(s) 1172
AsuC2I CCSGG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 1172
BbsI GAAGAC 1 cut(s) 1115
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 3 cut(s) 49, 806, 998
BccI CCATC 4 cut(s) 161, 183, 878, 1163
BcgI CGANNNNNNTGC 2 cut(s) 1157, 1191
BciVI GTATCC 1 cut(s) 343
BcnI CCSGG 1 cut(s) 707
BcoDI GTCTC 3 cut(s) 296, 924, 981
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 4 cut(s) 32, 339, 1050, 1218
BfmI CTRYAG 2 cut(s) 412, 803
BfrI CTTAAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 343
BglII AGATCT 1 cut(s) 640
BisI GCNGC 4 cut(s) 38, 795, 1012, 1015
BlsI GCNGC 4 cut(s) 39, 796, 1013, 1016
Bme1390I CCNGG 1 cut(s) 707
Bme18I GGWCC 1 cut(s) 1172
BmgT120I GGNCC 1 cut(s) 1172
BmiI GGNNCC 1 cut(s) 701
BmrFI CCNGG 1 cut(s) 707
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 4 cut(s) 74, 264, 361, 955
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 1115
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 648
BpuMI CCSGG 1 cut(s) 707
BsaAI YACGTR 1 cut(s) 1074
BsaJI CCNNGG 3 cut(s) 194, 493, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 499
Bse1I ACTGG 2 cut(s) 368, 701
Bse3DI GCAATG 4 cut(s) 68, 93, 374, 737
BseDI CCNNGG 3 cut(s) 194, 493, 565
BseGI GGATG 2 cut(s) 376, 1044
BseLI CCNNNNNNNGG 2 cut(s) 251, 499
BseMI GCAATG 4 cut(s) 68, 93, 374, 737
BseMII CTCAG 4 cut(s) 333, 473, 997, 1053
BseNI ACTGG 2 cut(s) 368, 701
BseXI GCAGC 3 cut(s) 49, 806, 998
BsgI GTGCAG 1 cut(s) 56
BshFI GGCC 2 cut(s) 171, 294
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 706
BslI CCNNNNNNNGG 2 cut(s) 251, 499
BsmAI GTCTC 3 cut(s) 296, 924, 981
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 2 cut(s) 171, 294
Bsp1286I GDGCHC 1 cut(s) 320
Bsp1407I TGTACA 1 cut(s) 718
Bsp143I GATC 5 cut(s) 182, 485, 640, 651, 1193
Bsp19I CCATGG 1 cut(s) 565
BspACI CCGC 4 cut(s) 209, 268, 1014, 1159
BspANI GGCC 2 cut(s) 171, 294
BspCNI CTCAG 4 cut(s) 332, 474, 996, 1054
BspLI GGNNCC 1 cut(s) 701
BspMAI CTGCAG 1 cut(s) 416
BspTI CTTAAG 1 cut(s) 344
BsrDI GCAATG 4 cut(s) 68, 93, 374, 737
BsrGI TGTACA 1 cut(s) 718
BsrI ACTGG 2 cut(s) 368, 701
BssECI CCNNGG 3 cut(s) 194, 493, 565
BssMI GATC 5 cut(s) 182, 485, 640, 651, 1193
BssT1I CCWWGG 2 cut(s) 194, 565
Bst4CI ACNGT 3 cut(s) 355, 605, 843
BstAFI CTTAAG 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 1074
BstC8I GCNNGC 3 cut(s) 133, 469, 1128
BstDEI CTNAG 7 cut(s) 319, 482, 951, 983, 1062, 1139, 1185
BstDSI CCRYGG 2 cut(s) 493, 565
BstF5I GGATG 2 cut(s) 376, 1044
BstHHI GCGC 2 cut(s) 121, 1212
BstKTI GATC 5 cut(s) 185, 488, 643, 654, 1196
BstMAI GTCTC 3 cut(s) 296, 924, 981
BstMBI GATC 5 cut(s) 182, 485, 640, 651, 1193
BstMWI GCNNNNNNNGC 3 cut(s) 116, 568, 1127
BstNSI RCATGY 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 705
BstSFI CTRYAG 2 cut(s) 412, 803
BstSNI TACGTA 1 cut(s) 1074
BstV1I GCAGC 3 cut(s) 49, 806, 998
BstV2I GAAGAC 1 cut(s) 1115
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 2 cut(s) 171, 294
BtgI CCRYGG 2 cut(s) 493, 565
BtsCI GGATG 2 cut(s) 376, 1044
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 409, 1113
Cac8I GCNNGC 3 cut(s) 133, 469, 1128
CaiI CAGNNNCTG 1 cut(s) 998
CfoI GCGC 2 cut(s) 121, 1212
Cfr13I GGNCC 1 cut(s) 1172
Csp6I GTAC 1 cut(s) 719
CviAII CATG 6 cut(s) 9, 218, 468, 566, 722, 1008
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 7 cut(s) 319, 482, 951, 983, 1062, 1139, 1185
DpnI GATC 5 cut(s) 184, 487, 642, 653, 1195
DpnII GATC 5 cut(s) 182, 485, 640, 651, 1193
DraIII CACNNNGTG 1 cut(s) 494
EciI GGCGGA 1 cut(s) 1174
Eco105I TACGTA 1 cut(s) 1074
Eco130I CCWWGG 2 cut(s) 194, 565
Eco32I GATATC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 1172
Eco57I CTGAAG 4 cut(s) 161, 509, 599, 1137
EcoRI GAATTC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 194, 565
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 2 cut(s) 194, 565
FaeI CATG 6 cut(s) 12, 221, 471, 569, 725, 1011
FatI CATG 6 cut(s) 8, 217, 467, 565, 721, 1007
FauI CCCGC 1 cut(s) 261
FauNDI CATATG 1 cut(s) 105
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 4 cut(s) 38, 795, 1012, 1015
FokI GGATG 2 cut(s) 383, 1031
Fsp4HI GCNGC 4 cut(s) 38, 795, 1012, 1015
FspBI CTAG 4 cut(s) 32, 339, 1050, 1218
GlaI GCGC 2 cut(s) 120, 1211
GluI GCNGC 4 cut(s) 38, 795, 1012, 1015
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 171, 294
HapII CCGG 1 cut(s) 706
HhaI GCGC 2 cut(s) 121, 1212
Hin1II CATG 6 cut(s) 12, 221, 471, 569, 725, 1011
Hin6I GCGC 2 cut(s) 119, 1210
HinP1I GCGC 2 cut(s) 119, 1210
HindIII AAGCTT 1 cut(s) 953
HinfI GANTC 4 cut(s) 100, 394, 619, 1004
HpaII CCGG 1 cut(s) 706
Hpy166II GTNNAC 3 cut(s) 694, 719, 775
Hpy188I TCNGA 7 cut(s) 322, 483, 528, 618, 636, 651, 986
Hpy188III TCNNGA 4 cut(s) 186, 309, 359, 782
Hpy8I GTNNAC 3 cut(s) 694, 719, 775
HpyAV CCTTC 4 cut(s) 38, 255, 306, 541
HpyCH4III ACNGT 3 cut(s) 355, 605, 843
HpyCH4IV ACGT 3 cut(s) 915, 1073, 1092
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 568, 1127
HpyF3I CTNAG 7 cut(s) 319, 482, 951, 983, 1062, 1139, 1185
HpySE526I ACGT 3 cut(s) 915, 1073, 1092
Hsp92II CATG 6 cut(s) 12, 221, 471, 569, 725, 1011
HspAI GCGC 2 cut(s) 119, 1210
Kzo9I GATC 5 cut(s) 182, 485, 640, 651, 1193
LmnI GCTCC 3 cut(s) 335, 567, 739
Lsp1109I GCAGC 3 cut(s) 49, 806, 998
LweI GCATC 4 cut(s) 74, 264, 361, 955
MaeI CTAG 4 cut(s) 32, 339, 1050, 1218
MaeII ACGT 3 cut(s) 915, 1073, 1092
MaeIII GTNAC 3 cut(s) 221, 1084, 1096
MalI GATC 5 cut(s) 184, 487, 642, 653, 1195
MboI GATC 5 cut(s) 182, 485, 640, 651, 1193
MboII GAAGA 6 cut(s) 170, 211, 515, 605, 1120, 1174
MfeI CAATTG 2 cut(s) 852, 925
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 6 cut(s) 4, 513, 852, 869, 925, 1039
MlyI GAGTC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 5 cut(s) 345, 519, 729, 912, 1152
MslI CAYNNNNRTG 1 cut(s) 466
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 1 cut(s) 706
MspR9I CCNGG 1 cut(s) 707
MunI CAATTG 2 cut(s) 852, 925
Mva1269I GAATGC 1 cut(s) 1027
MwoI GCNNNNNNNGC 3 cut(s) 116, 568, 1127
NciI CCSGG 1 cut(s) 707
NcoI CCATGG 1 cut(s) 565
NdeI CATATG 1 cut(s) 105
NdeII GATC 5 cut(s) 182, 485, 640, 651, 1193
NlaIII CATG 6 cut(s) 12, 221, 471, 569, 725, 1011
NlaIV GGNNCC 1 cut(s) 701
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 1096
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 471
PaeI GCATGC 1 cut(s) 471
PctI GAATGC 1 cut(s) 1027
PfeI GAWTC 3 cut(s) 394, 619, 1004
PkrI GCNGC 4 cut(s) 39, 796, 1013, 1016
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 1074
PsiI TTATAA 1 cut(s) 789
Psp1406I AACGTT 1 cut(s) 1092
PspN4I GGNNCC 1 cut(s) 701
PspPI GGNCC 1 cut(s) 1172
PstI CTGCAG 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 5 cut(s) 345, 519, 729, 912, 1152
SatI GCNGC 4 cut(s) 38, 795, 1012, 1015
Sau3AI GATC 5 cut(s) 182, 485, 640, 651, 1193
Sau96I GGNCC 1 cut(s) 1172
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 707
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 4 cut(s) 74, 264, 361, 955
SfcI CTRYAG 2 cut(s) 412, 803
SinI GGWCC 1 cut(s) 1172
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 2 cut(s) 344, 663
SmoI CTYRAG 2 cut(s) 344, 663
SnaBI TACGTA 1 cut(s) 1074
SpeI ACTAGT 1 cut(s) 31
SphI GCATGC 1 cut(s) 471
Sse9I AATT 6 cut(s) 4, 513, 852, 869, 925, 1039
SsiI CCGC 4 cut(s) 209, 268, 1014, 1159
SspMI CTAG 4 cut(s) 32, 339, 1050, 1218
StyD4I CCNGG 1 cut(s) 705
StyI CCWWGG 2 cut(s) 194, 565
TaaI ACNGT 3 cut(s) 355, 605, 843
TaiI ACGT 3 cut(s) 918, 1076, 1095
TaqI TCGA 2 cut(s) 181, 258
TasI AATT 6 cut(s) 4, 513, 852, 869, 925, 1039
TatI WGTACW 1 cut(s) 718
TauI GCSGC 1 cut(s) 1017
TfiI GAWTC 3 cut(s) 394, 619, 1004
Tru1I TTAA 5 cut(s) 345, 519, 729, 912, 1152
Tru9I TTAA 5 cut(s) 345, 519, 729, 912, 1152
TscAI CASTG 2 cut(s) 416, 1120
TseFI GTSAC 1 cut(s) 1096
TseI GCWGC 3 cut(s) 37, 794, 1011
Tsp45I GTSAC 1 cut(s) 1096
TspDTI ATGAA 8 cut(s) 17, 68, 407, 696, 736, 868, 1017, 1033
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 2 cut(s) 416, 1120
Vha464I CTTAAG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 1172
XapI RAATTY 3 cut(s) 4, 869, 1039
XceI RCATGY 1 cut(s) 471
XcmI CCANNNNNNNNNTGG 2 cut(s) 164, 182
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 4 cut(s) 32, 339, 1050, 1218
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.