AT5G55860

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009427
Physical Location & Seq
Forward (+)
22609433 .. 22612486
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55860.1

Sequence Viewer

Length: 1950 bp
ATGGTTGCTAAGAAGGGACGTAGAGATTCTTCAGACTCTTCTCCAATTGTGGAGGTTGGAGAGATTGACACAAGTGCTCCTTTTCAATCTGTTAAAGATGCGGTTAACCTTTTCGGTGAAGCTGCTTTCTCCGCTGAGAAACCGGTTTTTCGAAAACCGAATCCTCAGTCTGCTGAGAAAGTTTTGGTGAAGCAAACAGAGCTTCACTTGGCTCAGAAAGAGTTGAATAAGTTGAAGGAACAGCTTAAGAATGCTGAAACTATTAGAGAGCAAGCGTTGAGTGAGCTTGAATGGTCTAAAAGAACTGTTGATGAACTTACTCGTAAGCTTGAAGCGGTTAATGAGTCTAGAGATTCTGCAAATAAAGCTACTGAAGCTGCTAAGAGTCTAATTGAAGAAGCGAAACCGGGGAATGTTTCTGTAGCTAGTAGTAGTGATGCTCAGACTCGGGATATGGAAGAGTATGGGGAAGTATGTAAGGAACTTGATACCGCCAAGCAAGAGCTGAGGAAAATCCGTCAGGTTTCGAATGAGATTTTGGAAACAAAGACTGTTGCTTTAAGTAAAGTAGAGGAAGCTAAGAAAGTGAGTAAAGTTCATTCTGAGAAGATTGAGTTGCTTAGAAAAGAAATTGCAGCTGTTAATGAATCAGTTGAACAGACGAAGCTTGCGTGTTCTCAAGCCCGAAAGGAACAATCTGAGATATTTGCGGAGAAGGAGATTCAGCAGAAATCGTATAAAGCTGGCATGGAAGAATCTGCCAAGAAATCACTTGCTTTGAAGAATGAATTTGACCCTGAATTTGCAAAGAAGCTTGAAGTGCAGTTGACTGAGACATATAATGAGATCGATGAACTGCAGAAGCAAATGGAGACTGCGAAAGCATCGGATATAGATTCCGTAAATGGTGTGAGTTTGGAGTTGAATGAAGCTAAAGGTTTATTCGAGAAACTTGTGGAAGAAGAGAAGTCTTTGCAAGAGTTAGTGGAATCTCTTAAAGCAGAATTAAAGAATGTGAAGATGGAGCATGATGAAGTTGAAGCGAAGGAAGCTGAAATTGAATCTGTGGCTGGAGATCTTCATCTGAAGCTTAGCAGAAGTAAGAGTGAGCTAGAACAATGTGTTACAGAGGAATCTAAAGCAAAGGCTGCTTTGGAAGATATGATGTTAACCATCAATCAGATATCTTCTGAGACTGAAGCTGCTCGACGAGAAGCTGAGGGAATGAGAAACAAAGCTAAGGAGTTAATGAAGGAAGCAGAATCTGCGCATCTGGCTCTTGAAGACTCAGAGCTACATCTAAGGGTCGCGTTAGATGAAGCCGAAGAAGCGAAAGCTGCCGAGACAAAGGCGCTTGAACAGATAAAGTCAATGTCTGAAAAAACCAACGCTGCACGTAATTCGACTTCATCTGAGTCTGGATCTCAGAGCATCACACTGTCTCAAGAGGAGTTCAAATCACTGAGCAAGAGAGCTGAGGTATTCGATAAGCTAGCAGAAATGAAAGTGGCTGCTGCATTGGCTCAGGTGGAAGCAGTGAGAGCTAGCGAAAACGAGACACTGAAGAAGTTAGAGACAACACAAGAAGAGATTAAGAAGCTAAAGACTGCAACAGAAGAGGCACTGAAGAAAGCAGCTATGGCTGATGCTGCCAAGAAAGCGGTTGAAGGAGAACTCAGGAGATGGCGAGAAAGAGATCAGAAGAAAGCAGAGGAAGCGGCGACAAGGATTCTCGCAGAAGCTGAGATGAAGATGGCCAGTGAATCATCACCGCAACAACATTACAAAGCTCCGAAACAGAAACCTGTCAATAACAAACTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTATGCCGAATCTAAGTGGAATCTTCAACAGAAAGAAGAATCAAGTGGAATGGGGTTCTCCTTCATATCTCCCTGGAGAGAAACCCTTTTGA

Protein Analysis

649

Amino Acids

72.43

Weight (kDa)

5.44

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 21 - 568 1.3e-48 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1269
AccII CGCG 1 cut(s) 1310
AciI CCGC 8 cut(s) 101, 132, 335, 492, 710, 1661, 1718, 1772
AclWI GGATC 1 cut(s) 1429
AcoI YGGCCR 1 cut(s) 1755
AcsI RAATTY 2 cut(s) 788, 800
AcuI CTGAAG 6 cut(s) 15, 393, 1106, 1218, 1583, 1646
AflII CTTAAG 1 cut(s) 245
AgeI ACCGGT 1 cut(s) 142
AjnI CCWGG 1 cut(s) 1930
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 7 cut(s) 827, 866, 1187, 1337, 1446, 1550, 1568
AlwI GGATC 1 cut(s) 1429
AlwNI CAGNNNCTG 2 cut(s) 1265, 1742
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 1 cut(s) 1755
ApoI RAATTY 2 cut(s) 788, 800
ArsI GACNNNNNNTTYG 4 cut(s) 152, 184, 785, 817
AsiGI ACCGGT 1 cut(s) 142
AspLEI GCGC 2 cut(s) 1270, 1354
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 3 cut(s) 128, 199, 1761
AsuII TTCGAA 2 cut(s) 151, 527
AsuNHI GCTAGC 2 cut(s) 1492, 1544
AvaI CYCGRG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 1757
BarI GAAGNNNNNNTAC 4 cut(s) 13, 45, 1390, 1422
BbsI GAAGAC 2 cut(s) 1290, 1832
Bbv12I GWGCWC 1 cut(s) 79
BbvCI CCTCAGC 3 cut(s) 506, 1218, 1476
BccI CCATC 4 cut(s) 1015, 1181, 1677, 1747
BcgI CGANNNNNNTGC 2 cut(s) 1383, 1417
BciT130I CCWGG 1 cut(s) 1932
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 7 cut(s) 827, 866, 1187, 1337, 1446, 1550, 1568
BfaI CTAG 5 cut(s) 348, 426, 1112, 1493, 1545
BfmI CTRYAG 2 cut(s) 420, 857
BfoI RGCGCY 1 cut(s) 1355
BfrI CTTAAG 1 cut(s) 245
BglII AGATCT 1 cut(s) 1075
BlpI GCTNAGC 1 cut(s) 1091
Bme1390I CCNGG 2 cut(s) 408, 1932
BmeT110I CYCGRG 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 408, 1932
BmsI GCATC 6 cut(s) 88, 427, 893, 1279, 1440, 1636
BmtI GCTAGC 2 cut(s) 1496, 1548
BpiI GAAGAC 2 cut(s) 1290, 1832
BpmI CTGGAG 2 cut(s) 1092, 1841
Bpu10I CCTNAGC 5 cut(s) 506, 1218, 1239, 1476, 1524
Bpu1102I GCTNAGC 1 cut(s) 1091
Bpu14I TTCGAA 2 cut(s) 151, 527
BpuEI CTTGAG 2 cut(s) 663, 1428
BpuMI CCSGG 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 849
BsaAI YACGTR 1 cut(s) 1397
BsaBI GATNNNNATC 1 cut(s) 1080
BsaJI CCNNGG 2 cut(s) 407, 1930
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 1758, 1824
Bse8I GATNNNNATC 1 cut(s) 1080
BseBI CCWGG 1 cut(s) 1932
BseCI ATCGAT 1 cut(s) 849
BseDI CCNNGG 2 cut(s) 407, 1930
BseJI GATNNNNATC 1 cut(s) 1080
BseNI ACTGG 2 cut(s) 1758, 1824
BseRI GAGGAG 1 cut(s) 1463
BsgI GTGCAG 2 cut(s) 842, 1377
Bsh1236I CGCG 1 cut(s) 1310
BshFI GGCC 1 cut(s) 1757
BshTI ACCGGT 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 849
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 2 cut(s) 143, 407
BslFI GGGAC 1 cut(s) 30
BsmAI GTCTC 7 cut(s) 827, 866, 1187, 1337, 1446, 1550, 1568
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 1757
BsoBI CYCGRG 1 cut(s) 447
Bsp119I TTCGAA 2 cut(s) 151, 527
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 4 cut(s) 846, 1075, 1421, 1696
Bsp1720I GCTNAGC 1 cut(s) 1091
BspACI CCGC 8 cut(s) 101, 132, 335, 492, 710, 1661, 1718, 1772
BspANI GGCC 1 cut(s) 1757
BspDI ATCGAT 1 cut(s) 849
BspFNI CGCG 1 cut(s) 1310
BspMAI CTGCAG 1 cut(s) 861
BspOI GCTAGC 2 cut(s) 1496, 1548
BspPI GGATC 1 cut(s) 1429
BspT104I TTCGAA 2 cut(s) 151, 527
BspTI CTTAAG 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 2 cut(s) 1758, 1824
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 407, 1930
BssMI GATC 4 cut(s) 846, 1075, 1421, 1696
Bst2UI CCWGG 1 cut(s) 1932
Bst4CI ACNGT 3 cut(s) 307, 553, 1440
Bst6I CTCTTC 5 cut(s) 43, 453, 957, 1581, 1611
BstAFI CTTAAG 1 cut(s) 245
BstAPI GCANNNNNTGC 2 cut(s) 1148, 1265
BstBAI YACGTR 1 cut(s) 1397
BstBI TTCGAA 2 cut(s) 151, 527
BstC8I GCNNGC 5 cut(s) 273, 669, 745, 1494, 1546
BstFNI CGCG 1 cut(s) 1310
BstH2I RGCGCY 1 cut(s) 1355
BstHHI GCGC 2 cut(s) 1270, 1354
BstKTI GATC 4 cut(s) 849, 1078, 1424, 1699
BstMAI GTCTC 7 cut(s) 827, 866, 1187, 1337, 1446, 1550, 1568
BstMBI GATC 4 cut(s) 846, 1075, 1421, 1696
BstNI CCWGG 1 cut(s) 1932
BstSCI CCNGG 2 cut(s) 406, 1930
BstSFI CTRYAG 2 cut(s) 420, 857
BstUI CGCG 1 cut(s) 1310
BstV2I GAAGAC 2 cut(s) 1290, 1832
BstX2I RGATCY 2 cut(s) 1075, 1421
BstYI RGATCY 2 cut(s) 1075, 1421
Bsu15I ATCGAT 1 cut(s) 849
BsuRI GGCC 1 cut(s) 1757
BsuTUI ATCGAT 1 cut(s) 849
BtsI GCAGTG 1 cut(s) 1542
BtsIMutI CAGTG 6 cut(s) 1436, 1460, 1542, 1559, 1622, 1765
Cac8I GCNNGC 5 cut(s) 273, 669, 745, 1494, 1546
CaiI CAGNNNCTG 2 cut(s) 1265, 1742
CfoI GCGC 2 cut(s) 1270, 1354
Cfr10I RCCGGY 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 849
CspAI ACCGGT 1 cut(s) 142
CviAII CATG 2 cut(s) 748, 1028
DpnI GATC 4 cut(s) 848, 1077, 1423, 1698
DpnII GATC 4 cut(s) 846, 1075, 1421, 1696
EaeI YGGCCR 1 cut(s) 1755
Eam1104I CTCTTC 5 cut(s) 43, 453, 957, 1581, 1611
EarI CTCTTC 5 cut(s) 43, 453, 957, 1581, 1611
Eco32I GATATC 1 cut(s) 1185
Eco57I CTGAAG 6 cut(s) 15, 393, 1106, 1218, 1583, 1646
Eco88I CYCGRG 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 1930
EcoRV GATATC 1 cut(s) 1185
FaeI CATG 2 cut(s) 751, 1031
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 747, 1027
FspBI CTAG 5 cut(s) 348, 426, 1112, 1493, 1545
FspI TGCGCA 1 cut(s) 1269
GlaI GCGC 2 cut(s) 1269, 1353
GsuI CTGGAG 2 cut(s) 1092, 1841
HaeII RGCGCY 1 cut(s) 1355
HaeIII GGCC 1 cut(s) 1757
HapII CCGG 2 cut(s) 143, 407
HhaI GCGC 2 cut(s) 1270, 1354
Hin1II CATG 2 cut(s) 751, 1031
Hin6I GCGC 2 cut(s) 1268, 1352
HinP1I GCGC 2 cut(s) 1268, 1352
HincII GTYRAC 3 cut(s) 106, 828, 1170
HindII GTYRAC 3 cut(s) 106, 828, 1170
HindIII AAGCTT 4 cut(s) 326, 665, 812, 1088
HpaI GTTAAC 2 cut(s) 106, 1170
HpaII CCGG 2 cut(s) 143, 407
HphI GGTGA 3 cut(s) 128, 199, 1761
Hpy166II GTNNAC 3 cut(s) 106, 828, 1170
Hpy188III TCNNGA 7 cut(s) 348, 449, 946, 1280, 1419, 1445, 1678
Hpy8I GTNNAC 3 cut(s) 106, 828, 1170
Hpy99I CGWCG 1 cut(s) 1212
HpyAV CCTTC 7 cut(s) 7, 229, 709, 1039, 1246, 1661, 1929
HpyCH4III ACNGT 3 cut(s) 307, 553, 1440
HpyCH4IV ACGT 2 cut(s) 19, 1396
HpyCH4V TGCA 9 cut(s) 359, 635, 806, 823, 859, 976, 1394, 1517, 1610
HpySE526I ACGT 2 cut(s) 19, 1396
Hsp92II CATG 2 cut(s) 751, 1031
HspAI GCGC 2 cut(s) 1268, 1352
KspAI GTTAAC 2 cut(s) 106, 1170
Kzo9I GATC 4 cut(s) 846, 1075, 1421, 1696
LmnI GCTCC 3 cut(s) 82, 1024, 1795
LweI GCATC 6 cut(s) 88, 427, 893, 1279, 1440, 1636
MaeI CTAG 5 cut(s) 348, 426, 1112, 1493, 1545
MaeII ACGT 2 cut(s) 19, 1396
MaeIII GTNAC 1 cut(s) 1123
MalI GATC 4 cut(s) 848, 1077, 1423, 1698
MboI GATC 4 cut(s) 846, 1075, 1421, 1696
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 2 cut(s) 1075, 1421
MhlI GDGCHC 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 1757
MluCI AATT 8 cut(s) 45, 390, 630, 788, 800, 1004, 1056, 1399
MluNI TGGCCA 1 cut(s) 1757
MlyI GAGTC 6 cut(s) 29, 353, 394, 439, 1280, 1424
MmeI TCCRAC 1 cut(s) 37
Mox20I TGGCCA 1 cut(s) 1757
MscI TGGCCA 1 cut(s) 1757
Msp20I TGGCCA 1 cut(s) 1757
MspA1I CMGCKG 2 cut(s) 134, 638
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 2 cut(s) 143, 407
MspR9I CCNGG 2 cut(s) 408, 1932
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 1932
MvnI CGCG 1 cut(s) 1310
NciI CCSGG 1 cut(s) 408
NdeII GATC 4 cut(s) 846, 1075, 1421, 1696
NheI GCTAGC 2 cut(s) 1492, 1544
NlaIII CATG 2 cut(s) 751, 1031
NmeAIII GCCGAG 1 cut(s) 1366
NsbI TGCGCA 1 cut(s) 1269
NspV TTCGAA 2 cut(s) 151, 527
PcsI WCGNNNNNNNCGW 1 cut(s) 668
PctI GAATGC 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 142
PleI GAGTC 6 cut(s) 29, 352, 393, 439, 1280, 1423
PpsI GAGTC 6 cut(s) 29, 352, 393, 439, 1280, 1423
Ppu21I YACGTR 1 cut(s) 1397
Psp6I CCWGG 1 cut(s) 1930
PspGI CCWGG 1 cut(s) 1930
PstI CTGCAG 1 cut(s) 861
PstNI CAGNNNCTG 2 cut(s) 1265, 1742
PsuI RGATCY 2 cut(s) 1075, 1421
PvuII CAGCTG 1 cut(s) 638
Sau3AI GATC 4 cut(s) 846, 1075, 1421, 1696
SchI GAGTC 6 cut(s) 29, 353, 394, 439, 1280, 1424
ScrFI CCNGG 2 cut(s) 408, 1932
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 6 cut(s) 88, 427, 893, 1279, 1440, 1636
SfcI CTRYAG 2 cut(s) 420, 857
SfuI TTCGAA 2 cut(s) 151, 527
SmlI CTYRAG 3 cut(s) 245, 678, 1443
SmoI CTYRAG 3 cut(s) 245, 678, 1443
Sse9I AATT 8 cut(s) 45, 390, 630, 788, 800, 1004, 1056, 1399
SsiI CCGC 8 cut(s) 101, 132, 335, 492, 710, 1661, 1718, 1772
SspMI CTAG 5 cut(s) 348, 426, 1112, 1493, 1545
StyD4I CCNGG 2 cut(s) 406, 1930
TaaI ACNGT 3 cut(s) 307, 553, 1440
TaiI ACGT 2 cut(s) 22, 1399
TaqI TCGA 7 cut(s) 151, 527, 849, 945, 1207, 1403, 1485
TasI AATT 8 cut(s) 45, 390, 630, 788, 800, 1004, 1056, 1399
TauI GCSGC 1 cut(s) 1721
TscAI CASTG 6 cut(s) 1443, 1467, 1542, 1566, 1629, 1765
TspGWI ACGGA 2 cut(s) 506, 889
TspRI CASTG 6 cut(s) 1443, 1467, 1542, 1566, 1629, 1765
Vha464I CTTAAG 1 cut(s) 245
XapI RAATTY 2 cut(s) 788, 800
XbaI TCTAGA 1 cut(s) 347
XspI CTAG 5 cut(s) 348, 426, 1112, 1493, 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.