Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009427

Physical Location & Seq

Genomic Coordinates Reverse (-)

82650778 .. 82651947

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCAGACATTGGTGAAGATCTGTAGCGGCAGCGCCAGTTGCAACGAGGCCGAGTCCGCCTGCAAATCAGGCGACGGGGTTCGCTGTGCGGATGGAGGTGACGAAGGAATTGGTAACGGGGGTGACGAAGGGATTGGTGACGGAGGCGAAGGAGGCGGCGATTTGTTGGAATTTGAGAAGCCAGAGCCAGGAGAGCTAGCAGGTGCTCCGGGAGGGGTCTTTGCCGACAGTCCGATCGGCACCGGGGATGCTGATCTCGACGTCAAGCTCACCAAACGCGGCCCAAAAGACCACCAGAGTGCTACAAATTCTCCCAACCCTAAAGTAGAGCTGGGAGAGATCGACACCAGGGCACCTTTCCAATCTGTTAAAGATGCTGTGTCACTATTTGGCGAGGGGACATTCTCTGGCTCTGGGGAGAAACCTGCCATTAGGAAGACAAAACCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016020 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

151

Amino Acids

15.07

Weight (kDa)

4.47

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55860
fragaria_vesca	FvH4_3g42741
malus_domestica	MD03G1029200.v1.1 MD11G1032400.v1.1
prunus_persica	Prupe.6G025300_v2.0.a1 Prupe.6G025300_v2.0.a1
pyrus_communis	pycom11g02810
rosa_chinensis	RchiOBHm_Chr5g0076481 RchiOBHm_Chr5g0076551 RchiOBHm_Chr5g0076561 RchiOBHm_Chr5g0076571 RchiOBHm_Chr5g0076581
rosa_laevigata	RLG00000036623 RLG00000036624
rosa_multiflora	Rmu_ssc0000184.1_g000038
rosa_roxburghii	Rroxscaffold_1G00005420
rosa_rugosa	Rorug05G0448500
rosa_samantha	Rh5AG503200 Rh5BG524900 Rh5CG548500 Rh5DG536700
rosa_wichuraiana	Rw5G046670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
AatII	GACGTC	1 cut(s)	264
Acc36I	ACCTGC	2 cut(s)	191, 433
AccB1I	GGYRCC	2 cut(s)	239, 352
AccII	CGCG	1 cut(s)	279
AciI	CCGC	5 cut(s)	27, 57, 89, 156, 279
AcsI	RAATTY	2 cut(s)	170, 307
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	187, 347
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	196, 268, 331
AluI	AGCT	3 cut(s)	196, 268, 331
Alw21I	GWGCWC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	48, 280
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	2 cut(s)	170, 307
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	2 cut(s)	210, 244
AsuHPI	GGTGA	5 cut(s)	25, 110, 134, 149, 262
AsuNHI	GCTAGC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	355
BanI	GGYRCC	2 cut(s)	239, 352
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	189, 349
BcnI	CCSGG	2 cut(s)	210, 244
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	2 cut(s)	191, 433
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	4 cut(s)	28, 31, 157, 280
BlsI	GCNGC	4 cut(s)	29, 32, 158, 281
Bme1390I	CCNGG	4 cut(s)	189, 210, 244, 349
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	241, 354
BmrFI	CCNGG	4 cut(s)	189, 210, 244, 349
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	238, 364
BmtI	GCTAGC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	443
BpuMI	CCSGG	2 cut(s)	210, 244
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	243, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	36, 448
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	189, 349
BseDI	CCNNGG	2 cut(s)	243, 348
BseGI	GGATG	2 cut(s)	97, 253
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	36, 448
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	50, 282
BshNI	GGYRCC	2 cut(s)	239, 352
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	209, 243
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	50, 282
Bsp1286I	GDGCHC	2 cut(s)	208, 355
Bsp143I	GATC	4 cut(s)	18, 234, 253, 339
BspACI	CCGC	5 cut(s)	27, 57, 89, 156, 279
BspANI	GGCC	2 cut(s)	50, 282
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	241, 354
BspMI	ACCTGC	2 cut(s)	191, 433
BspOI	GCTAGC	1 cut(s)	200
BspT107I	GGYRCC	2 cut(s)	239, 352
BsrI	ACTGG	2 cut(s)	36, 448
BssECI	CCNNGG	2 cut(s)	243, 348
BssMI	GATC	4 cut(s)	18, 234, 253, 339
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	189, 349
Bst4CI	ACNGT	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	61, 198
BstF5I	GGATG	2 cut(s)	97, 253
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	4 cut(s)	21, 237, 256, 342
BstMBI	GATC	4 cut(s)	18, 234, 253, 339
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 56, 69, 153, 193
BstNI	CCWGG	2 cut(s)	189, 349
BstSCI	CCNGG	4 cut(s)	187, 208, 242, 347
BstSFI	CTRYAG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	50, 282
BtsCI	GGATG	2 cut(s)	97, 253
BveI	ACCTGC	2 cut(s)	191, 433
Cac8I	GCNNGC	2 cut(s)	61, 198
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	281
CviJI	RGCY	8 cut(s)	50, 181, 187, 196, 268, 282, 331, 411
CviKI_1	RGCY	8 cut(s)	50, 181, 187, 196, 268, 282, 331, 411
DpnI	GATC	4 cut(s)	20, 236, 255, 341
DpnII	GATC	4 cut(s)	18, 234, 253, 339
EciI	GGCGGA	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	187, 347
FaqI	GGGAC	1 cut(s)	412
Fnu4HI	GCNGC	4 cut(s)	28, 31, 157, 280
FokI	GGATG	2 cut(s)	104, 260
Fsp4HI	GCNGC	4 cut(s)	28, 31, 157, 280
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	4 cut(s)	28, 31, 157, 280
GsaI	CCCAGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	50, 282
HapII	CCGG	2 cut(s)	209, 243
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	261
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	2 cut(s)	209, 243
HphI	GGTGA	5 cut(s)	25, 110, 134, 149, 262
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	257
Hpy99I	CGWCG	2 cut(s)	77, 263
HpyAV	CCTTC	3 cut(s)	98, 122, 143
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	4, 42, 63
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 56, 69, 153, 193
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	261
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	18, 234, 253, 339
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	238, 364
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	5 cut(s)	98, 113, 122, 137, 381
MalI	GATC	4 cut(s)	20, 236, 255, 341
MboI	GATC	4 cut(s)	18, 234, 253, 339
MboII	GAAGA	2 cut(s)	28, 448
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	208, 355
MluCI	AATT	3 cut(s)	108, 170, 307
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	40, 89, 137, 146, 206, 388
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	2 cut(s)	209, 243
MspR9I	CCNGG	4 cut(s)	189, 210, 244, 349
MvaI	CCWGG	2 cut(s)	189, 349
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	5 cut(s)	39, 56, 69, 153, 193
NciI	CCSGG	2 cut(s)	210, 244
NdeII	GATC	4 cut(s)	18, 234, 253, 339
NheI	GCTAGC	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	241, 354
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	4 cut(s)	98, 122, 137, 381
OliI	CACNNNNGTG	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	29, 32, 158, 281
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	187, 347
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	2 cut(s)	187, 347
PspN4I	GGNNCC	2 cut(s)	241, 354
PspPI	GGNCC	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	18
PvuI	CGATCG	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	4 cut(s)	28, 31, 157, 280
Sau3AI	GATC	4 cut(s)	18, 234, 253, 339
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	4 cut(s)	189, 210, 244, 349
SduI	GDGCHC	2 cut(s)	208, 355
SetI	ASST	8 cut(s)	100, 198, 205, 264, 270, 333, 358, 427
SfaNI	GCATC	2 cut(s)	238, 364
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	108, 170, 307
SsiI	CCGC	5 cut(s)	27, 57, 89, 156, 279
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	4 cut(s)	187, 208, 242, 347
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	258, 342
TasI	AATT	3 cut(s)	108, 170, 307
TauI	GCSGC	3 cut(s)	30, 159, 282
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	4 cut(s)	98, 122, 137, 381
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	4 cut(s)	98, 122, 137, 381
TspGWI	ACGGA	1 cut(s)	156
XapI	RAATTY	2 cut(s)	170, 307
XspI	CTAG	1 cut(s)	197
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.