Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009427

Physical Location & Seq

Genomic Coordinates Reverse (-)

82215611 .. 82216240

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTGAATGAAATTGGAGCTCTGCAAAAGCAAATGGAGAATGAGAAGGCTTCAGATTTATATTCTGTAAAGGTCGTTTCGGAGCTGGATGATGCTAAGGAATCACCGCATAAAGTAGCCGAAGAAGAAAACAGCCTCAGAAGTTTAGTTGAAGCACTTAAGGTGGAAATTGAGAATGTGAAGAAAGAGCATGCTGAGCTCAAGGAAAAGGAAGCGGAAACAGAATCTATTGCTGGGAACTTACATGTCAAACTGCGGAAAACTAAGACTGAGCTTGAAGCATGCCTAGCCGAAGAATCTATAGCCAGAGGTGCTTCCAATGAAATGATAGCAACGCTAAACCAGCTGTCGATGGAAATTGAAAGTGCTCGACGGGATGCAGAAGAGATGAATATTAAAGCGGAGGAAATGAAAAAGGAAGCTGAAACTACCAAAAGCGCTGTAAAAGAGGTAGAGAAGAAGCTGAAGAAGCTAAATCAGCAGAAGAAAGGGCCCTTGAACAGATTAGAACTTTATCCGAGAGAACTAACGCTGTTCGCGCATCAACATCTGAGTCTGGTATCCAGATCACTATATCGAAGGATGAATTTGAGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016020 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

199

Amino Acids

22.67

Weight (kDa)

5.88

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	10 - 157	3e-07	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55860
fragaria_vesca	FvH4_3g42741
malus_domestica	MD03G1029200.v1.1 MD11G1032400.v1.1
prunus_persica	Prupe.6G025300_v2.0.a1 Prupe.6G025300_v2.0.a1
pyrus_communis	pycom11g02810
rosa_chinensis	RchiOBHm_Chr5g0076481 RchiOBHm_Chr5g0076551 RchiOBHm_Chr5g0076561 RchiOBHm_Chr5g0076571 RchiOBHm_Chr5g0076581
rosa_laevigata	RLG00000036623 RLG00000036624
rosa_multiflora	Rmu_ssc0000184.1_g000038
rosa_roxburghii	Rroxscaffold_1G00005420
rosa_rugosa	Rorug05G0448500
rosa_samantha	Rh5AG503200 Rh5BG524900 Rh5CG548500 Rh5DG536700
rosa_wichuraiana	Rw5G046670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	539
AciI	CCGC	4 cut(s)	107, 215, 256, 401
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	36, 485
AfeI	AGCGCT	1 cut(s)	439
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	5 cut(s)	7, 152, 278, 362, 499
AluBI	AGCT	8 cut(s)	20, 85, 199, 274, 346, 422, 463, 472
AluI	AGCT	8 cut(s)	20, 85, 199, 274, 346, 422, 463, 472
Alw21I	GWGCWC	3 cut(s)	22, 201, 370
Aor51HI	AGCGCT	1 cut(s)	439
AoxI	GGCC	1 cut(s)	491
ApaI	GGGCCC	1 cut(s)	495
ApoI	RAATTY	1 cut(s)	586
AspLEI	GCGC	2 cut(s)	440, 541
AspS9I	GGNCC	2 cut(s)	491, 492
AsuHPI	GGTGA	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	495
BanII	GRGCYC	3 cut(s)	22, 201, 495
Bbv12I	GWGCWC	3 cut(s)	22, 201, 370
BccI	CCATC	1 cut(s)	346
BciVI	GTATCC	1 cut(s)	571
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	571
BlpI	GCTNAGC	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	491, 492
BmiI	GGNNCC	1 cut(s)	493
BmsI	GCATC	3 cut(s)	82, 367, 550
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	185
BseGI	GGATG	3 cut(s)	94, 382, 588
BseMII	CTCAG	4 cut(s)	151, 186, 261, 542
BseSI	GKGCMC	1 cut(s)	495
BseYI	CCCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	1 cut(s)	493
BsiHKAI	GWGCWC	3 cut(s)	22, 201, 370
BsnI	GGCC	1 cut(s)	493
Bsp120I	GGGCCC	1 cut(s)	491
Bsp1286I	GDGCHC	4 cut(s)	22, 201, 370, 495
Bsp143I	GATC	1 cut(s)	566
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	4 cut(s)	107, 215, 256, 401
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	4 cut(s)	150, 187, 262, 543
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	1 cut(s)	493
BspTI	CTTAAG	1 cut(s)	158
BssMI	GATC	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	192, 283
BstDEI	CTNAG	6 cut(s)	96, 137, 195, 264, 270, 551
BstF5I	GGATG	3 cut(s)	94, 382, 588
BstFNI	CGCG	1 cut(s)	539
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	440, 541
BstKTI	GATC	1 cut(s)	569
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	7 cut(s)	196, 287, 311, 343, 469, 478, 538
BstNSI	RCATGY	3 cut(s)	194, 248, 285
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	493
BtsCI	GGATG	3 cut(s)	94, 382, 588
Cac8I	GCNNGC	2 cut(s)	192, 283
CfoI	GCGC	2 cut(s)	440, 541
Cfr13I	GGNCC	2 cut(s)	491, 492
CviAII	CATG	3 cut(s)	191, 245, 282
DdeI	CTNAG	6 cut(s)	96, 137, 195, 264, 270, 551
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	2 cut(s)	20, 199
Eco24I	GRGCYC	3 cut(s)	22, 201, 495
Eco47III	AGCGCT	1 cut(s)	439
Eco53kI	GAGCTC	2 cut(s)	20, 199
Eco57I	CTGAAG	2 cut(s)	36, 485
EcoICRI	GAGCTC	2 cut(s)	20, 199
EcoO109I	RGGNCCY	2 cut(s)	491, 492
EcoT38I	GRGCYC	3 cut(s)	22, 201, 495
FaeI	CATG	3 cut(s)	194, 248, 285
FaiI	YATR	7 cut(s)	61, 111, 192, 246, 283, 302, 574
FatI	CATG	3 cut(s)	190, 244, 281
FokI	GGATG	3 cut(s)	101, 389, 595
FriOI	GRGCYC	3 cut(s)	22, 201, 495
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	2 cut(s)	439, 540
GsaI	CCCAGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	493
HhaI	GCGC	2 cut(s)	440, 541
Hin1II	CATG	3 cut(s)	194, 248, 285
Hin6I	GCGC	2 cut(s)	438, 539
HinP1I	GCGC	2 cut(s)	438, 539
HinfI	GANTC	5 cut(s)	101, 224, 296, 553, 592
HphI	GGTGA	1 cut(s)	96
Hpy188I	TCNGA	5 cut(s)	55, 82, 140, 519, 552
Hpy188III	TCNNGA	1 cut(s)	564
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	40, 573
HpyCH4V	TGCA	2 cut(s)	25, 380
HpyF10VI	GCNNNNNNNGC	7 cut(s)	196, 287, 311, 343, 469, 478, 538
HpyF3I	CTNAG	6 cut(s)	96, 137, 195, 264, 270, 551
Hsp92II	CATG	3 cut(s)	194, 248, 285
HspAI	GCGC	2 cut(s)	438, 539
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	17, 82
LpnPI	CCDG	6 cut(s)	71, 219, 319, 356, 542, 577
LweI	GCATC	3 cut(s)	82, 367, 550
MaeI	CTAG	1 cut(s)	287
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	8 cut(s)	134, 137, 193, 305, 395, 469, 478, 496
MhlI	GDGCHC	4 cut(s)	22, 201, 370, 495
MluCI	AATT	4 cut(s)	12, 168, 357, 586
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	4 cut(s)	146, 302, 397, 442
MseI	TTAA	2 cut(s)	159, 396
MspA1I	CMGCKG	1 cut(s)	346
MspCI	CTTAAG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	7 cut(s)	196, 287, 311, 343, 469, 478, 538
NdeII	GATC	1 cut(s)	566
NlaIII	CATG	3 cut(s)	194, 248, 285
NlaIV	GGNNCC	1 cut(s)	493
NspI	RCATGY	3 cut(s)	194, 248, 285
PaeI	GCATGC	2 cut(s)	194, 285
PciI	ACATGT	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	101, 224, 296
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
PscI	ACATGT	1 cut(s)	244
Psp124BI	GAGCTC	2 cut(s)	22, 201
PspFI	CCCAGC	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	493
PspOMI	GGGCCC	1 cut(s)	491
PspPI	GGNCC	2 cut(s)	491, 492
PvuII	CAGCTG	1 cut(s)	346
SacI	GAGCTC	2 cut(s)	22, 201
SaqAI	TTAA	2 cut(s)	159, 396
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	2 cut(s)	491, 492
SchI	GAGTC	1 cut(s)	562
SduI	GDGCHC	4 cut(s)	22, 201, 370, 495
SfaNI	GCATC	3 cut(s)	82, 367, 550
SfcI	CTRYAG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	158, 200
SmoI	CTYRAG	2 cut(s)	158, 200
SphI	GCATGC	2 cut(s)	194, 285
Sse9I	AATT	4 cut(s)	12, 168, 357, 586
SsiI	CCGC	4 cut(s)	107, 215, 256, 401
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	2 cut(s)	22, 201
TaqI	TCGA	3 cut(s)	350, 370, 577
TasI	AATT	4 cut(s)	12, 168, 357, 586
TfiI	GAWTC	3 cut(s)	101, 224, 296
Tru1I	TTAA	2 cut(s)	159, 396
Tru9I	TTAA	2 cut(s)	159, 396
TspDTI	ATGAA	5 cut(s)	24, 336, 404, 425, 599
Vha464I	CTTAAG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	3 cut(s)	194, 248, 285
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.