Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009427

Physical Location & Seq

Genomic Coordinates Reverse (-)

82214928 .. 82215609

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGAGTGGCTGCTGCCATGGCTCAGGTGGAAGCTGTGAAGGCTAGTGAAAATGAGGCCTTGAAGAGGTTAGAGGCAACCCGGAAGGAGATTGAAGATATGAAGGCTGCAACTGTGGAGGCCAAAAAAAGGGCCGAAATGGCTGAAGCAGCCAAAATGGCAGTAGAAGGAGAGCTCCGAAGGTGGCGGGAATGCGAGCAAAAGAAAGCAGCAGATGCTGCCTCACGGATATTGGCAGAGACAGAGTCGTCAGTGGAATCATCCCTGCGGCATTTCAGGATTCAAATGCAGAACTCCCAGATGAAAACTGCCCAGGGCCGGAAGATGGAGAAATCAAAGACCTCTGTTTTGAAAAAGACACTTTTGCCTACCCTCAGTGGGATGTTTAATAAGGAAAAGGAACCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016020 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

136

Amino Acids

15.29

Weight (kDa)

9.52

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	1 - 68	1.1e-10	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55860
fragaria_vesca	FvH4_3g42741
malus_domestica	MD03G1029200.v1.1 MD11G1032400.v1.1
prunus_persica	Prupe.6G025300_v2.0.a1 Prupe.6G025300_v2.0.a1
pyrus_communis	pycom11g02810
rosa_chinensis	RchiOBHm_Chr5g0076481 RchiOBHm_Chr5g0076551 RchiOBHm_Chr5g0076561 RchiOBHm_Chr5g0076571 RchiOBHm_Chr5g0076581
rosa_laevigata	RLG00000036623 RLG00000036624
rosa_multiflora	Rmu_ssc0000184.1_g000038
rosa_roxburghii	Rroxscaffold_1G00005420
rosa_rugosa	Rorug05G0448500
rosa_samantha	Rh5AG503200 Rh5BG524900 Rh5CG548500 Rh5DG536700
rosa_wichuraiana	Rw5G046670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AciI	CCGC	2 cut(s)	187, 268
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	5 cut(s)	66, 129, 318, 325, 378
AgsI	TTSAA	4 cut(s)	64, 95, 284, 352
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	35, 175
AluI	AGCT	2 cut(s)	35, 175
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	4 cut(s)	57, 120, 132, 316
ApeKI	GCWGC	6 cut(s)	11, 14, 107, 149, 209, 218
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspS9I	GGNCC	2 cut(s)	132, 316
AsuC2I	CCSGG	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	94, 161, 205, 221
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	45
BglI	GCCNNNNNGGC	2 cut(s)	140, 158
BisI	GCNGC	7 cut(s)	12, 15, 108, 150, 210, 219, 269
BlsI	GCNGC	7 cut(s)	13, 16, 109, 151, 211, 220, 270
Bme1390I	CCNGG	2 cut(s)	82, 314
BmgT120I	GGNCC	2 cut(s)	132, 316
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	2 cut(s)	82, 314
BmsI	GCATC	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	18, 312, 313
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 129, 318, 325, 378
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	3 cut(s)	18, 312, 313
BseGI	GGATG	2 cut(s)	260, 387
BseLI	CCNNNNNNNGG	5 cut(s)	66, 129, 318, 325, 378
BseMII	CTCAG	2 cut(s)	38, 388
BseXI	GCAGC	4 cut(s)	94, 161, 205, 221
BshFI	GGCC	4 cut(s)	59, 122, 134, 318
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	82, 319
BslI	CCNNNNNNNGG	5 cut(s)	66, 129, 318, 325, 378
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	59, 122, 134, 318
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	187, 268
BspANI	GGCC	4 cut(s)	59, 122, 134, 318
BspCNI	CTCAG	2 cut(s)	37, 387
BspLI	GGNNCC	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	18, 312, 313
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	2 cut(s)	215, 218
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	24, 374
BstDSI	CCRYGG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	260, 387
BstMAI	GTCTC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 41, 140, 149, 158, 215, 218
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	80, 312
BstV1I	GCAGC	4 cut(s)	94, 161, 205, 221
BsuRI	GGCC	4 cut(s)	59, 122, 134, 318
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	260, 387
BtsIMutI	CAGTG	2 cut(s)	258, 382
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	132, 316
CviAII	CATG	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	24, 374
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	22
FaiI	YATR	2 cut(s)	20, 101
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	7 cut(s)	12, 15, 108, 150, 210, 219, 269
FokI	GGATG	2 cut(s)	247, 394
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	7 cut(s)	12, 15, 108, 150, 210, 219, 269
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	7 cut(s)	12, 15, 108, 150, 210, 219, 269
HaeIII	GGCC	4 cut(s)	59, 122, 134, 318
HapII	CCGG	2 cut(s)	82, 319
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	3 cut(s)	245, 257, 280
HpaII	CCGG	2 cut(s)	82, 319
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	277
HpyAV	CCTTC	5 cut(s)	34, 79, 97, 161, 174
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	110, 289
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 41, 140, 149, 158, 215, 218
HpyF3I	CTNAG	2 cut(s)	24, 374
Hsp92II	CATG	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	11, 95, 262, 278, 299, 311, 326, 332
Lsp1109I	GCAGC	4 cut(s)	94, 161, 205, 221
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	45
MboII	GAAGA	3 cut(s)	76, 107, 334
MhlI	GDGCHC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	7 cut(s)	49, 60, 67, 112, 232, 352, 383
MseI	TTAA	1 cut(s)	387
MspI	CCGG	2 cut(s)	82, 319
MspR9I	CCNGG	2 cut(s)	82, 314
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	7 cut(s)	20, 41, 140, 149, 158, 215, 218
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	18
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	402
PasI	CCCWGGG	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	59
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	257, 280
PflFI	GACNNNGTC	1 cut(s)	244
PkrI	GCNGC	7 cut(s)	13, 16, 109, 151, 211, 220, 270
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	2 cut(s)	132, 316
PstNI	CAGNNNCTG	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	7 cut(s)	12, 15, 108, 150, 210, 219, 269
Sau96I	GGNCC	2 cut(s)	132, 316
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	82, 314
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	6 cut(s)	30, 37, 71, 177, 185, 344
SfaNI	GCATC	1 cut(s)	205
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	187, 268
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	80, 312
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	257, 280
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	2 cut(s)	258, 382
TseI	GCWGC	6 cut(s)	11, 14, 107, 149, 209, 218
TspDTI	ATGAA	2 cut(s)	116, 317
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	258, 382
Tth111I	GACNNNGTC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.