AT5G56590

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22907264 .. 22909707
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56590.1

Sequence Viewer

Length: 1521 bp
ATGGCGAGAGACTTCAAGCTTATCTTCTCCATTTCAATTCTGCTTCTGCTTCTAGACTGTTGTTACGGTGGCAAGGTCGGAGTTTGTTACGGAAGAAGCGCCGACGATCTTCCAACACCGTCAAAAGTTGTTCAATTGATTCAACAGCACAACATCAAATACGTTAGAATCTACGATTACAATTCTCAAGTCCTCAAAGCATTTGGAAACACAAGCATTGAGCTAATGATTGGAGTTCCAAACTCTGATCTTAACGCTTTCTCTCAATCCCAATCAAATGTGGACACCTGGCTTAAGAACAGCGTCTTACCATACTATCCAACGACCAAGATCACTTACATTACCGTTGGAGCTGAATCTACTGATGATCCACACATCAATGCTTCGTCTTTCGTTGTCCCCGCGATGCAGAATGTCTTAACCGCTCTGAGAAAAGTCGGTTTGAGTAGAAGAATCAAGGTTTCGACTACTCTTTCCCTCGGAATTCTCTCTAGATCTTTCCCTCCTTCTGCTGGAGCATTCAACAGCAGCTATGCTTATTTCTTGAGACCAATGTTAGAGTTTCTTGCAGAGAATAAGTCTCCTTTCATGATCGATCTTTATCCGTACTACGCTTACAGAGACTCTCCGAACAATGTGTCTTTGGATTATGTGTTGTTTGAGTCTTCCTCTGAAGTGATTGACCCAAACACGGGTTTGCTTTACAAGAACATGTTTGATGCTCAAGTTGATGCTCTTTATTACGCTCTCACGGCTTTAAACTTCAGGACAATCAAGATTATGGTTACTGAGACTGGATGGCCAACCAAAGGTTCACCGAAGGAGAAAGCTGCTGCGTCTTCTGACAACGCGGAGACATACAATTCAAACATAATCCGTCATGTAGTTACCAACCAAGGCACACCTGCAAAGCCAGGAGAGGCAATGAACGTTTATATATTCTCATTGTTCAACGAGAATCGGAAAGCGGGTTTGGATTCAGAGAGAAACTGGGGATTGTTCTACCCTGACCAGACAAGTGTTTATCAGTTGGATTTCACGGGAAAGAGCAACGGGTTTCACTCTAATTCGAGTGGTACAAACTCAAGTGGGAGTAGTAATAGCTGGTGCATTGCTTCTTCTAAAGCTTCAGAGAGAGATCTGAAAGGTGCTTTGGATTGGGCTTGTGGTCCTGGAAATGTTGATTGCACAGCTATTCAGCCAAGCCAGCCTTGTTTTCAACCAGATACTTTGGTTTCTCATGCTTCTTTCGTGTTCAATAGCTATTTCCAACAGAACAGAGCAACAGACGTTGCTTGCAGCTTTGGAGGAGCTGGTGTTAAAGTCAACAAGGACCCTAGTTATGACAAATGCATATACATTACTGCAGGAGGGAACAAAACCAAGGCGACGAATGCAACTGCATTGACCTCCTCTGCTTCAACTCCACGTGGAAACGAACTACTCCAATGGATTTTGAAACTCTGTCTCATGATCTCGTTGTTCTTCAGTTTGCAAACTATGAATTCACAGGCACTGTAA

Protein Analysis

506

Amino Acids

55.6

Weight (kDa)

7.91

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 346 6.7e-91 Glycosyl hydrolases family 17
X8 PF07983 368 - 439 1.7e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 913
Acc36I ACCTGC 1 cut(s) 913
AccBSI CCGCTC 1 cut(s) 425
AccII CGCG 2 cut(s) 404, 851
AciI CCGC 4 cut(s) 402, 423, 851, 968
AclI AACGTT 1 cut(s) 930
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 800
AcsI RAATTY 2 cut(s) 483, 1504
AcuI CTGAAG 4 cut(s) 693, 748, 1113, 1471
AcvI CACGTG 1 cut(s) 1430
AfaI GTAC 2 cut(s) 608, 1078
AfiI CCNNNNNNNGG 4 cut(s) 512, 691, 692, 809
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 711
AjnI CCWGG 3 cut(s) 287, 913, 1171
AjuI GAANNNNNNNTTGG 6 cut(s) 796, 828, 956, 988, 1136, 1168
Alw26I GTCTC 7 cut(s) 3, 541, 585, 615, 785, 848, 1472
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 1516
AoxI GGCC 1 cut(s) 800
ApeKI GCWGC 4 cut(s) 528, 830, 833, 1299
ApoI RAATTY 2 cut(s) 483, 1504
ArsI GACNNNNNNTTYG 2 cut(s) 623, 655
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 1169, 1333
AsuHPI GGTGA 1 cut(s) 807
AvaII GGWCC 2 cut(s) 1169, 1333
BaeI ACNNNNGTAYC 2 cut(s) 1218, 1251
BalI TGGCCA 1 cut(s) 802
BbrPI CACGTG 1 cut(s) 1430
BbsI GAAGAC 2 cut(s) 657, 831
BbvI GCAGC 4 cut(s) 540, 817, 820, 1311
BccI CCATC 1 cut(s) 792
BceAI ACGGC 1 cut(s) 768
BciT130I CCWGG 3 cut(s) 289, 915, 1173
BcoDI GTCTC 7 cut(s) 3, 541, 585, 615, 785, 848, 1472
BfaI CTAG 3 cut(s) 53, 492, 1338
BfmI CTRYAG 1 cut(s) 1365
BfoI RGCGCY 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 913
BglII AGATCT 2 cut(s) 494, 1138
BisI GCNGC 4 cut(s) 529, 831, 834, 1300
BlsI GCNGC 4 cut(s) 530, 832, 835, 1301
Bme1390I CCNGG 3 cut(s) 289, 915, 1173
Bme18I GGWCC 2 cut(s) 1169, 1333
BmgT120I GGNCC 2 cut(s) 1169, 1333
BmiI GGNNCC 1 cut(s) 1335
BmrFI CCNGG 3 cut(s) 289, 915, 1173
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 3 cut(s) 396, 709, 721
BmuI ACTGGG 1 cut(s) 1000
BpiI GAAGAC 2 cut(s) 657, 831
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 4 cut(s) 171, 565, 708, 1069
Bsa29I ATCGAT 1 cut(s) 594
BsaAI YACGTR 1 cut(s) 1430
BsaBI GATNNNNATC 1 cut(s) 600
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 3 cut(s) 478, 895, 1383
BsaXI ACNNNNNCTCC 2 cut(s) 1302, 1332
Bsc4I CCNNNNNNNGG 4 cut(s) 512, 691, 692, 809
Bse1I ACTGG 2 cut(s) 799, 995
Bse3DI GCAATG 2 cut(s) 930, 1110
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 3 cut(s) 289, 915, 1173
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 3 cut(s) 478, 895, 1383
BseGI GGATG 1 cut(s) 803
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 4 cut(s) 512, 691, 692, 809
BseMI GCAATG 2 cut(s) 930, 1110
BseMII CTCAG 2 cut(s) 419, 780
BseNI ACTGG 2 cut(s) 799, 995
BseRI GAGGAG 2 cut(s) 1323, 1402
BseXI GCAGC 4 cut(s) 540, 817, 820, 1311
Bsh1236I CGCG 2 cut(s) 404, 851
BshFI GGCC 1 cut(s) 802
BshVI ATCGAT 1 cut(s) 594
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 4 cut(s) 512, 691, 692, 809
BsmAI GTCTC 7 cut(s) 3, 541, 585, 615, 785, 848, 1472
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 2 cut(s) 518, 1399
BsnI GGCC 1 cut(s) 802
Bso31I GGTCTC 1 cut(s) 541
Bsp143I GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
BspACI CCGC 4 cut(s) 402, 423, 851, 968
BspANI GGCC 1 cut(s) 802
BspCNI CTCAG 2 cut(s) 420, 781
BspDI ATCGAT 1 cut(s) 594
BspFNI CGCG 2 cut(s) 404, 851
BspHI TCATGA 2 cut(s) 588, 1470
BspLI GGNNCC 1 cut(s) 1335
BspMAI CTGCAG 1 cut(s) 1369
BspMI ACCTGC 1 cut(s) 913
BspPI GGATC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 930, 1110
BsrI ACTGG 2 cut(s) 799, 995
BssECI CCNNGG 3 cut(s) 478, 895, 1383
BssMI GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
BssT1I CCWWGG 2 cut(s) 895, 1383
Bst2UI CCWGG 3 cut(s) 289, 915, 1173
Bst4CI ACNGT 5 cut(s) 59, 68, 120, 346, 1518
BstAFI CTTAAG 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 1430
BstC8I GCNNGC 2 cut(s) 1208, 1297
BstDEI CTNAG 2 cut(s) 428, 789
BstF5I GGATG 1 cut(s) 803
BstFNI CGCG 2 cut(s) 404, 851
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 9 cut(s) 109, 250, 333, 370, 497, 594, 598, 1141, 1476
BstMAI GTCTC 7 cut(s) 3, 541, 585, 615, 785, 848, 1472
BstMBI GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
BstMWI GCNNNNNNNGC 3 cut(s) 752, 1207, 1394
BstNI CCWGG 3 cut(s) 289, 915, 1173
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 3 cut(s) 287, 913, 1171
BstSFI CTRYAG 1 cut(s) 1365
BstUI CGCG 2 cut(s) 404, 851
BstV1I GCAGC 4 cut(s) 540, 817, 820, 1311
BstV2I GAAGAC 2 cut(s) 657, 831
BstX2I RGATCY 2 cut(s) 494, 1138
BstYI RGATCY 2 cut(s) 494, 1138
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 1 cut(s) 802
BsuTUI ATCGAT 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 803
BtsIMutI CAGTG 1 cut(s) 1514
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 2 cut(s) 1208, 1297
CaiI CAGNNNCTG 1 cut(s) 1516
CciI TCATGA 2 cut(s) 588, 1470
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 1169, 1333
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 2 cut(s) 292, 825
Csp6I GTAC 2 cut(s) 607, 1077
CviAII CATG 5 cut(s) 589, 712, 881, 1241, 1471
CviQI GTAC 2 cut(s) 607, 1077
DdeI CTNAG 2 cut(s) 428, 789
DpnI GATC 9 cut(s) 108, 249, 332, 369, 496, 593, 597, 1140, 1475
DpnII GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
DraI TTTAAA 1 cut(s) 759
EaeI YGGCCR 1 cut(s) 800
Eco130I CCWWGG 2 cut(s) 895, 1383
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 1169, 1333
Eco57I CTGAAG 4 cut(s) 693, 748, 1113, 1471
Eco72I CACGTG 1 cut(s) 1430
EcoO109I RGGNCCY 1 cut(s) 1333
EcoRI GAATTC 2 cut(s) 483, 1504
EcoRII CCWGG 3 cut(s) 287, 913, 1171
EcoT14I CCWWGG 2 cut(s) 895, 1383
EcoT22I ATGCAT 1 cut(s) 1355
ErhI CCWWGG 2 cut(s) 895, 1383
FaeI CATG 5 cut(s) 592, 715, 884, 1244, 1474
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 1195, 1227
FaqI GGGAC 1 cut(s) 383
FatI CATG 5 cut(s) 588, 711, 880, 1240, 1470
FauI CCCGC 2 cut(s) 409, 961
Fnu4HI GCNGC 4 cut(s) 529, 831, 834, 1300
FokI GGATG 1 cut(s) 810
Fsp4HI GCNGC 4 cut(s) 529, 831, 834, 1300
FspBI CTAG 3 cut(s) 53, 492, 1338
GlaI GCGC 1 cut(s) 100
GluI GCNGC 4 cut(s) 529, 831, 834, 1300
GsuI CTGGAG 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 802
HgaI GACGC 2 cut(s) 292, 825
HhaI GCGC 1 cut(s) 101
Hin1II CATG 5 cut(s) 592, 715, 884, 1244, 1474
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 1327
HindII GTYRAC 1 cut(s) 1327
HindIII AAGCTT 2 cut(s) 17, 1125
HinfI GANTC 8 cut(s) 139, 168, 356, 453, 623, 662, 958, 977
HphI GGTGA 1 cut(s) 807
Hpy166II GTNNAC 3 cut(s) 283, 815, 1327
Hpy188III TCNNGA 7 cut(s) 53, 492, 544, 589, 766, 775, 1471
Hpy8I GTNNAC 3 cut(s) 283, 815, 1327
Hpy99I CGWCG 2 cut(s) 107, 1393
HpyAV CCTTC 2 cut(s) 516, 814
HpyCH4III ACNGT 5 cut(s) 59, 68, 120, 346, 1518
HpyCH4IV ACGT 4 cut(s) 162, 930, 1290, 1429
HpyF10VI GCNNNNNNNGC 3 cut(s) 752, 1207, 1394
HpyF3I CTNAG 2 cut(s) 428, 789
HpySE526I ACGT 4 cut(s) 162, 930, 1290, 1429
Hsp92II CATG 5 cut(s) 592, 715, 884, 1244, 1474
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
LmnI GCTCC 3 cut(s) 350, 515, 1310
Lsp1109I GCAGC 4 cut(s) 540, 817, 820, 1311
LweI GCATC 3 cut(s) 396, 709, 721
MaeI CTAG 3 cut(s) 53, 492, 1338
MaeII ACGT 4 cut(s) 162, 930, 1290, 1429
MaeIII GTNAC 4 cut(s) 62, 86, 784, 886
MalI GATC 9 cut(s) 108, 249, 332, 369, 496, 593, 597, 1140, 1475
MbiI CCGCTC 1 cut(s) 425
MboI GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
MboII GAAGA 8 cut(s) 16, 101, 105, 462, 657, 831, 1110, 1477
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 2 cut(s) 494, 1138
MlsI TGGCCA 1 cut(s) 802
MluCI AATT 7 cut(s) 36, 134, 181, 483, 862, 1066, 1504
MluNI TGGCCA 1 cut(s) 802
MlyI GAGTC 2 cut(s) 617, 671
MmeI TCCRAC 6 cut(s) 58, 137, 328, 344, 1011, 1294
MnlI CCTC 9 cut(s) 203, 488, 513, 679, 913, 1301, 1364, 1420, 1423
Mox20I TGGCCA 1 cut(s) 802
Mph1103I ATGCAT 1 cut(s) 1355
MscI TGGCCA 1 cut(s) 802
MseI TTAA 5 cut(s) 252, 294, 419, 758, 1320
MslI CAYNNNNRTG 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 802
MspCI CTTAAG 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 289, 915, 1173
MunI CAATTG 1 cut(s) 134
Mva1269I GAATGC 2 cut(s) 518, 1399
MvaI CCWGG 3 cut(s) 289, 915, 1173
MvnI CGCG 2 cut(s) 404, 851
MwoI GCNNNNNNNGC 3 cut(s) 752, 1207, 1394
NdeII GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
NlaIII CATG 5 cut(s) 592, 715, 884, 1244, 1474
NlaIV GGNNCC 1 cut(s) 1335
NsiI ATGCAT 1 cut(s) 1355
NspI RCATGY 1 cut(s) 715
PagI TCATGA 2 cut(s) 588, 1470
PaqCI CACCTGC 1 cut(s) 913
PciI ACATGT 1 cut(s) 711
PctI GAATGC 2 cut(s) 518, 1399
PfeI GAWTC 6 cut(s) 139, 168, 356, 453, 958, 977
PfoI TCCNGGA 1 cut(s) 1171
PkrI GCNGC 4 cut(s) 530, 832, 835, 1301
PleI GAGTC 2 cut(s) 617, 670
PmaCI CACGTG 1 cut(s) 1430
PmlI CACGTG 1 cut(s) 1430
PpsI GAGTC 2 cut(s) 617, 670
Ppu21I YACGTR 1 cut(s) 1430
PpuMI RGGWCCY 1 cut(s) 1333
PscI ACATGT 1 cut(s) 711
Psp1406I AACGTT 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 1333
Psp6I CCWGG 3 cut(s) 287, 913, 1171
PspCI CACGTG 1 cut(s) 1430
PspGI CCWGG 3 cut(s) 287, 913, 1171
PspN4I GGNNCC 1 cut(s) 1335
PspPI GGNCC 2 cut(s) 1169, 1333
PspPPI RGGWCCY 1 cut(s) 1333
PstI CTGCAG 1 cut(s) 1369
PstNI CAGNNNCTG 1 cut(s) 1516
PsuI RGATCY 2 cut(s) 494, 1138
RsaI GTAC 2 cut(s) 608, 1078
RsaNI GTAC 2 cut(s) 607, 1077
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 5 cut(s) 252, 294, 419, 758, 1320
SatI GCNGC 4 cut(s) 529, 831, 834, 1300
Sau3AI GATC 9 cut(s) 106, 247, 330, 367, 494, 591, 595, 1138, 1473
Sau96I GGNCC 2 cut(s) 1169, 1333
SchI GAGTC 2 cut(s) 617, 671
ScrFI CCNGG 3 cut(s) 289, 915, 1173
SfaNI GCATC 3 cut(s) 396, 709, 721
SfcI CTRYAG 1 cut(s) 1365
SinI GGWCC 2 cut(s) 1169, 1333
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 5 cut(s) 186, 293, 544, 723, 1084
SmoI CTYRAG 5 cut(s) 186, 293, 544, 723, 1084
Sse9I AATT 7 cut(s) 36, 134, 181, 483, 862, 1066, 1504
SsiI CCGC 4 cut(s) 402, 423, 851, 968
SspMI CTAG 3 cut(s) 53, 492, 1338
StyD4I CCNGG 3 cut(s) 287, 913, 1171
StyI CCWWGG 2 cut(s) 895, 1383
TaaI ACNGT 5 cut(s) 59, 68, 120, 346, 1518
TaiI ACGT 4 cut(s) 165, 933, 1293, 1432
TaqI TCGA 3 cut(s) 464, 594, 1070
TasI AATT 7 cut(s) 36, 134, 181, 483, 862, 1066, 1504
TfiI GAWTC 6 cut(s) 139, 168, 356, 453, 958, 977
Tru1I TTAA 5 cut(s) 252, 294, 419, 758, 1320
Tru9I TTAA 5 cut(s) 252, 294, 419, 758, 1320
TscAI CASTG 1 cut(s) 1521
TseI GCWGC 4 cut(s) 528, 830, 833, 1299
TspDTI ATGAA 3 cut(s) 577, 941, 1517
TspGWI ACGGA 3 cut(s) 105, 594, 866
TspRI CASTG 1 cut(s) 1521
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 1169, 1333
XapI RAATTY 2 cut(s) 483, 1504
XbaI TCTAGA 2 cut(s) 52, 491
XceI RCATGY 1 cut(s) 715
XspI CTAG 3 cut(s) 53, 492, 1338
Zsp2I ATGCAT 1 cut(s) 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.