FvH4_1g06440

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
3401805 .. 3405257
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06440.t1

Sequence Viewer

Length: 1497 bp
ATGGGTTGTGGGTTCAGGCTTGTCTTTGCCATTTTGCAGCTGCTTGTGATTTTGGATCTTTGTGAAGGAAGCATTGTGGGAATTTGCTATGGAAGAAATGCCGATGACCTTCCAACACCTGATAAAGCTGCCCAGCTTGTGCAGCTTCACAACATCAAATATGTTCGGATTTATGACTCCAACATACAGGTCCTCAAGGCCTTTGCGAACACCGGTGTTGAACTTATGATTGGGGTTCCAAACTCAGACTTGTTGCCATTTTCCCAGTTCCAAACTAATGCAGATACCTGGCTTAAGAACAGCATTCTGCCTTACTATCCGGCTACAAAGATCACATACATAACAGTGGGAGCTGAAGTAACTGAGACCACTGGTAATGTCTCTGCCCTTGTAGTACCTGCCATGAGAAATGTCCTCACAGCACTGAAGAAAGCCGGTCTTAGTAAGAAGATTAAAGTATCAAGTACACATTCCCTCGGTGTTCTGTCTAGATCATTTCCTCCCTCTGCAGGAGCGTTTAGTAGCAGCTACGCGTCTTTCCTGAAGCCCCTGTTGGAATTTCTTGCGGAAAACCAGTCACCCTTCATGATTGATATATATCCATACTATGCTTACAGAGATTCCCCAAGCAATGTCACTCTTGACTATGCTCTTTTTCAGGCATCCTCAGAAGTTATTGATCCGAATACTGGTTTGCTGTATACTAACATGTTTGATGCTCAGATAGATGCTATATATTATGCACTGATGGGTCTGAATTTCAAAACAATCAATGTTATGGTCACTGAGACAGGCTGGCCGTCAAAAGGATCGCCGAAAGAGACAGCTGCAACTCCTGACAATGCCCAAACTTACAATACAAATCTGATTCGCCATGTCATTAACAATACTGGTACACCTGCAAAGCCAGGAGAGAAAGTGGATACCTACCTCTTCTCTTTGTTCAATGAAAATAGGAAGCCTGGATTGGAATCTGAGAGGAATTGGGGGCTATTTTATCCTGACCAGACAAGCGTCTACAACCTAGATTTCACTGGAAAAAATGCTGTGGATATGACCACAAATAATGTTACCAGTTCAAATGCAACAACAACCTGGTGCATTGCTTCAAGTAAAGCTTCTGAAGCAGACTTGCAGAATGCCTTGGATTGGGCTTGTGGTTCTGGGAATGTGGACTGTACTCCTATTCAGCCTAGCCAGCCTTGTTTCGAGCCAGATAATACAGTGTCTCATGCATCTTATGCTTTCAACGTTTATTACCAGCAAAATGGGGCTACAGATATTGCTTGCAGTTTTGGAGGGTCAGGGATTAAAGTCGATAAGAACCCAAGCTATGACAGCTGCCTCTATATGACTGCAGGGAGCAACAAAACTATTGCTAGTAGTAATACAACAGCAATATCTTCTACTTCCTCCTCTGCCACGGTGAAGGGTGTTCCAGCATGGATTTTCACTTGCTTTCTTGCCACCTTCATATCATTTCTTTTTCGAAGTTGA

Protein Analysis

499

Amino Acids

54.17

Weight (kDa)

5.24

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 344 7.4e-93 Glycosyl hydrolases family 17
X8 PF07983 365 - 436 1.5e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 907
Acc36I ACCTGC 2 cut(s) 406, 907
AccI GTMKAC 2 cut(s) 701, 1017
AccII CGCG 1 cut(s) 533
AciI CCGC 1 cut(s) 566
AclI AACGTT 1 cut(s) 1251
AclWI GGATC 3 cut(s) 63, 674, 817
AcoI YGGCCR 1 cut(s) 797
AcsI RAATTY 3 cut(s) 81, 557, 757
AcuI CTGAAG 4 cut(s) 375, 446, 563, 1143
AfaI GTAC 4 cut(s) 396, 466, 895, 1180
AfiI CCNNNNNNNGG 4 cut(s) 509, 689, 806, 1149
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 2 cut(s) 531, 708
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 6 cut(s) 221, 763, 946, 1080, 1110, 1249
AjnI CCWGG 4 cut(s) 287, 907, 961, 1094
AjuI GAANNNNNNNTTGG 6 cut(s) 213, 245, 536, 568, 950, 982
Alw26I GTCTC 5 cut(s) 359, 385, 782, 815, 1233
AlwI GGATC 3 cut(s) 63, 674, 817
AoxI GGCC 2 cut(s) 198, 797
ApeKI GCWGC 7 cut(s) 37, 40, 128, 142, 525, 827, 1341
ApoI RAATTY 3 cut(s) 81, 557, 757
AsiGI ACCGGT 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 570, 1438
AsuII TTCGAA 1 cut(s) 1489
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 7 cut(s) 27, 49, 115, 154, 537, 814, 1328
BccI CCATC 1 cut(s) 742
BceAI ACGGC 1 cut(s) 784
BciT130I CCWGG 4 cut(s) 289, 909, 963, 1096
BciVI GTATCC 1 cut(s) 916
BcoDI GTCTC 5 cut(s) 359, 385, 782, 815, 1233
BfaI CTAG 4 cut(s) 489, 1025, 1194, 1380
BfmI CTRYAG 3 cut(s) 507, 1275, 1356
BfrI CTTAAG 1 cut(s) 293
BfuAI ACCTGC 2 cut(s) 406, 907
BfuI GTATCC 1 cut(s) 916
BisI GCNGC 7 cut(s) 38, 41, 129, 143, 526, 828, 1342
BlsI GCNGC 7 cut(s) 39, 42, 130, 144, 527, 829, 1343
Bme1390I CCNGG 4 cut(s) 289, 909, 963, 1096
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 4 cut(s) 289, 909, 963, 1096
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 4 cut(s) 671, 706, 718, 1244
BmuI ACTGGG 1 cut(s) 259
BoxI GACNNNNGTC 1 cut(s) 1013
Bpu14I TTCGAA 1 cut(s) 1489
BpuEI CTTGAG 1 cut(s) 179
BsaBI GATNNNNATC 2 cut(s) 597, 970
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 475, 1143, 1422
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 4 cut(s) 342, 372, 903, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 509, 689, 806, 1149
Bse118I RCCGGY 2 cut(s) 212, 434
Bse1I ACTGG 7 cut(s) 265, 376, 574, 694, 895, 1039, 1074
Bse3DI GCAATG 2 cut(s) 637, 1101
Bse8I GATNNNNATC 2 cut(s) 597, 970
BseBI CCWGG 4 cut(s) 289, 909, 963, 1096
BseDI CCNNGG 3 cut(s) 475, 1143, 1422
BseGI GGATG 1 cut(s) 662
BseJI GATNNNNATC 2 cut(s) 597, 970
BseLI CCNNNNNNNGG 4 cut(s) 509, 689, 806, 1149
BseMI GCAATG 2 cut(s) 637, 1101
BseMII CTCAG 6 cut(s) 258, 354, 681, 734, 777, 966
BseNI ACTGG 7 cut(s) 265, 376, 574, 694, 895, 1039, 1074
BseRI GAGGAG 1 cut(s) 1405
BseXI GCAGC 7 cut(s) 27, 49, 115, 154, 537, 814, 1328
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 533
BshFI GGCC 2 cut(s) 200, 799
BshTI ACCGGT 1 cut(s) 212
BsiSI CCGG 3 cut(s) 213, 320, 435
BslI CCNNNNNNNGG 4 cut(s) 509, 689, 806, 1149
BsmAI GTCTC 5 cut(s) 359, 385, 782, 815, 1233
BsmI GAATGC 2 cut(s) 303, 1144
BsnI GGCC 2 cut(s) 200, 799
Bso31I GGTCTC 1 cut(s) 359
Bsp119I TTCGAA 1 cut(s) 1489
Bsp143I GATC 5 cut(s) 55, 330, 491, 679, 809
BspACI CCGC 1 cut(s) 566
BspANI GGCC 2 cut(s) 200, 799
BspCNI CTCAG 6 cut(s) 257, 355, 680, 733, 778, 967
BspFNI CGCG 1 cut(s) 533
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 2 cut(s) 511, 1360
BspMI ACCTGC 2 cut(s) 406, 907
BspPI GGATC 3 cut(s) 63, 674, 817
BspT104I TTCGAA 1 cut(s) 1489
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 637, 1101
BsrFI RCCGGY 2 cut(s) 212, 434
BsrI ACTGG 7 cut(s) 265, 376, 574, 694, 895, 1039, 1074
BssAI RCCGGY 2 cut(s) 212, 434
BssECI CCNNGG 3 cut(s) 475, 1143, 1422
BssMI GATC 5 cut(s) 55, 330, 491, 679, 809
BssNAI GTATAC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 1143
Bst1107I GTATAC 1 cut(s) 702
Bst2UI CCWGG 4 cut(s) 289, 909, 963, 1096
Bst4CI ACNGT 4 cut(s) 346, 1178, 1225, 1426
Bst6I CTCTTC 1 cut(s) 938
BstAFI CTTAAG 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 1241
BstBI TTCGAA 1 cut(s) 1489
BstC8I GCNNGC 3 cut(s) 797, 1199, 1288
BstDEI CTNAG 7 cut(s) 244, 363, 440, 667, 720, 786, 975
BstDSI CCRYGG 1 cut(s) 1422
BstF5I GGATG 1 cut(s) 662
BstFNI CGCG 1 cut(s) 533
BstKTI GATC 5 cut(s) 58, 333, 494, 682, 812
BstMAI GTCTC 5 cut(s) 359, 385, 782, 815, 1233
BstMBI GATC 5 cut(s) 55, 330, 491, 679, 809
BstMWI GCNNNNNNNGC 5 cut(s) 142, 1124, 1198, 1241, 1338
BstNI CCWGG 4 cut(s) 289, 909, 963, 1096
BstNSI RCATGY 1 cut(s) 712
BstPAI GACNNNNGTC 1 cut(s) 1013
BstSCI CCNGG 4 cut(s) 287, 907, 961, 1094
BstSFI CTRYAG 3 cut(s) 507, 1275, 1356
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 7 cut(s) 27, 49, 115, 154, 537, 814, 1328
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 1268
BstYI RGATCY 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 702
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 2 cut(s) 200, 799
BtgI CCRYGG 1 cut(s) 1422
BtsCI GGATG 1 cut(s) 662
BtsIMutI CAGTG 7 cut(s) 351, 369, 422, 743, 783, 1032, 1230
BveI ACCTGC 2 cut(s) 406, 907
Cac8I GCNNGC 3 cut(s) 797, 1199, 1288
CciI TCATGA 1 cut(s) 585
Cfr10I RCCGGY 2 cut(s) 212, 434
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 2 cut(s) 522, 1003
CsiI ACCWGGT 1 cut(s) 1094
Csp6I GTAC 4 cut(s) 395, 465, 894, 1179
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 6 cut(s) 403, 586, 709, 875, 1232, 1443
CviQI GTAC 4 cut(s) 395, 465, 894, 1179
DdeI CTNAG 7 cut(s) 244, 363, 440, 667, 720, 786, 975
DpnI GATC 5 cut(s) 57, 332, 493, 681, 811
DpnII GATC 5 cut(s) 55, 330, 491, 679, 809
EaeI YGGCCR 1 cut(s) 797
Eam1104I CTCTTC 1 cut(s) 938
EarI CTCTTC 1 cut(s) 938
Eco130I CCWWGG 1 cut(s) 1143
Eco147I AGGCCT 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 4 cut(s) 375, 446, 563, 1143
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 4 cut(s) 287, 907, 961, 1094
EcoT14I CCWWGG 1 cut(s) 1143
EcoT22I ATGCAT 1 cut(s) 1237
ErhI CCWWGG 1 cut(s) 1143
FaeI CATG 6 cut(s) 406, 589, 712, 878, 1235, 1446
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 1102, 1134
FatI CATG 6 cut(s) 402, 585, 708, 874, 1231, 1442
FblI GTMKAC 2 cut(s) 701, 1017
Fnu4HI GCNGC 7 cut(s) 38, 41, 129, 143, 526, 828, 1342
FokI GGATG 1 cut(s) 649
Fsp4HI GCNGC 7 cut(s) 38, 41, 129, 143, 526, 828, 1342
FspBI CTAG 4 cut(s) 489, 1025, 1194, 1380
GluI GCNGC 7 cut(s) 38, 41, 129, 143, 526, 828, 1342
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 2 cut(s) 200, 799
HapII CCGG 3 cut(s) 213, 320, 435
HgaI GACGC 2 cut(s) 522, 1003
Hin1II CATG 6 cut(s) 406, 589, 712, 878, 1235, 1446
HindIII AAGCTT 1 cut(s) 1116
HinfI GANTC 4 cut(s) 176, 620, 868, 971
HpaII CCGG 3 cut(s) 213, 320, 435
HphI GGTGA 2 cut(s) 570, 1438
Hpy166II GTNNAC 5 cut(s) 467, 702, 896, 1018, 1174
Hpy188I TCNGA 9 cut(s) 168, 247, 670, 684, 723, 756, 867, 976, 1123
Hpy188III TCNNGA 6 cut(s) 489, 541, 586, 641, 836, 1001
Hpy8I GTNNAC 5 cut(s) 467, 702, 896, 1018, 1174
HpyAV CCTTC 5 cut(s) 59, 119, 592, 1423, 1480
HpyCH4III ACNGT 4 cut(s) 346, 1178, 1225, 1426
HpyCH4IV ACGT 1 cut(s) 1251
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 1124, 1198, 1241, 1338
HpyF3I CTNAG 7 cut(s) 244, 363, 440, 667, 720, 786, 975
HpySE526I ACGT 1 cut(s) 1251
Hsp92II CATG 6 cut(s) 406, 589, 712, 878, 1235, 1446
Kzo9I GATC 5 cut(s) 55, 330, 491, 679, 809
LmnI GCTCC 3 cut(s) 350, 512, 1362
Lsp1109I GCAGC 7 cut(s) 27, 49, 115, 154, 537, 814, 1328
LweI GCATC 4 cut(s) 671, 706, 718, 1244
MabI ACCWGGT 1 cut(s) 1094
MaeI CTAG 4 cut(s) 489, 1025, 1194, 1380
MaeII ACGT 1 cut(s) 1251
MaeIII GTNAC 5 cut(s) 358, 576, 634, 781, 1069
MalI GATC 5 cut(s) 57, 332, 493, 681, 811
MboI GATC 5 cut(s) 55, 330, 491, 679, 809
MboII GAAGA 5 cut(s) 105, 439, 460, 925, 1395
MflI RGATCY 1 cut(s) 55
MluCI AATT 4 cut(s) 81, 557, 757, 982
MluI ACGCGT 1 cut(s) 531
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 3 cut(s) 137, 204, 534
Mph1103I ATGCAT 1 cut(s) 1237
MseI TTAA 4 cut(s) 294, 453, 882, 1311
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 3 cut(s) 40, 827, 1341
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 3 cut(s) 213, 320, 435
MspR9I CCNGG 4 cut(s) 289, 909, 963, 1096
Mva1269I GAATGC 2 cut(s) 303, 1144
MvaI CCWGG 4 cut(s) 289, 909, 963, 1096
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 5 cut(s) 142, 1124, 1198, 1241, 1338
NdeII GATC 5 cut(s) 55, 330, 491, 679, 809
NlaIII CATG 6 cut(s) 406, 589, 712, 878, 1235, 1446
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 3 cut(s) 576, 634, 781
NsiI ATGCAT 1 cut(s) 1237
NspI RCATGY 1 cut(s) 712
NspV TTCGAA 1 cut(s) 1489
PagI TCATGA 1 cut(s) 585
PaqCI CACCTGC 1 cut(s) 907
PceI AGGCCT 1 cut(s) 200
PciI ACATGT 1 cut(s) 708
PctI GAATGC 2 cut(s) 303, 1144
PfeI GAWTC 3 cut(s) 620, 868, 971
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 7 cut(s) 39, 42, 130, 144, 527, 829, 1343
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 190
PscI ACATGT 1 cut(s) 708
PshAI GACNNNNGTC 1 cut(s) 1013
Psp1406I AACGTT 1 cut(s) 1251
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 4 cut(s) 287, 907, 961, 1094
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 4 cut(s) 287, 907, 961, 1094
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 2 cut(s) 511, 1360
PsuI RGATCY 1 cut(s) 55
PvuII CAGCTG 3 cut(s) 40, 827, 1341
RsaI GTAC 4 cut(s) 396, 466, 895, 1180
RsaNI GTAC 4 cut(s) 395, 465, 894, 1179
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 4 cut(s) 294, 453, 882, 1311
SatI GCNGC 7 cut(s) 38, 41, 129, 143, 526, 828, 1342
Sau3AI GATC 5 cut(s) 55, 330, 491, 679, 809
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 4 cut(s) 289, 909, 963, 1096
SexAI ACCWGGT 1 cut(s) 1094
SfaNI GCATC 4 cut(s) 671, 706, 718, 1244
SfcI CTRYAG 3 cut(s) 507, 1275, 1356
SfuI TTCGAA 1 cut(s) 1489
SgrAI CRCCGGYG 1 cut(s) 212
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 194, 293
SmoI CTYRAG 2 cut(s) 194, 293
Sse9I AATT 4 cut(s) 81, 557, 757, 982
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 566
SspMI CTAG 4 cut(s) 489, 1025, 1194, 1380
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 287, 907, 961, 1094
StyI CCWWGG 1 cut(s) 1143
TaaI ACNGT 4 cut(s) 346, 1178, 1225, 1426
TaiI ACGT 1 cut(s) 1254
TaqI TCGA 3 cut(s) 1209, 1317, 1489
TasI AATT 4 cut(s) 81, 557, 757, 982
TatI WGTACW 2 cut(s) 464, 1178
TfiI GAWTC 3 cut(s) 620, 868, 971
Tru1I TTAA 4 cut(s) 294, 453, 882, 1311
Tru9I TTAA 4 cut(s) 294, 453, 882, 1311
TscAI CASTG 7 cut(s) 351, 376, 429, 750, 790, 1039, 1230
TseFI GTSAC 3 cut(s) 576, 634, 781
TseI GCWGC 7 cut(s) 37, 40, 128, 142, 525, 827, 1341
Tsp45I GTSAC 3 cut(s) 576, 634, 781
TspDTI ATGAA 3 cut(s) 574, 963, 1462
TspRI CASTG 7 cut(s) 351, 376, 429, 750, 790, 1039, 1230
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 3 cut(s) 81, 557, 757
XbaI TCTAGA 1 cut(s) 488
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 2 cut(s) 701, 1017
XspI CTAG 4 cut(s) 489, 1025, 1194, 1380
Zsp2I ATGCAT 1 cut(s) 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.