Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030696.1

Orthogroup ID

OG0011352

Physical Location & Seq

Genomic Coordinates Forward (+)

286 .. 2116

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030696.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atggatctttgccaaggaagcattgtgggaatttgctatggaagaaatgctgatgaccttcctacacctgacaaagctgctcagcttgtgcagcttcacaacatcaaatatgttcggatttatgactctaacatacaggtcctcaaggcctttgcaaacactggtgttgaacttatgattggggttccaaattcagacttgttgccattttctcagttccaaactaatgcagatacctggcttaagaacagcattatgccttactatccggctacaaagatcacatacataacagttggagctgaagtaactgagaccaccggtaatgtctctgcccttgtagtacctgccatgagaaatgtcctcacagcactgaagaaagctggtcttagtaagaagattaaagtatcaagtacacattccctcggtgttctgtctagatcattccctccctctgcgggggcgtttagtagcagctatgcatctttcctgaagcccatgttggaatttcttgccgaaaaccagtcacccttcatgattgatatatatccatactatgcttacagagattccccaagcaatgtcactcttgactacgctctatttcaggcatcctcagaagttattgatccaaacaccggtttgctgtacactaacatgtttgatgctcagattgatgctatatattatgcactgatggctctgaatttcagaacaatcaatattatggtcactgagacaggctggccgtcgaaaggatcaccaaaagagacagctgcaactcctgacaatgcccaaacttacaatacaaatctgattcgccatgtcattaacaatactggcacacctgcgaaacctggacagaaggtggatagctacctcttctctttgttcaatgaaaataggaagcctgggttggaatctgagaggaattgggggctattttatcctgaccagacaagcgtctacaacctggatttcaccggaaaaaatgctgtggatatgaacacagatgctaatgttaccagttcaaatggaacaacaacttggtgcattgcttcaagtaaagcttctgaagcggacttgcagaatgctttagactgggcttgtggttctgggaatgtggactgtacaccgattcagcctagccagccttgttttgagcctgataatacagtatctcatgcatcttacgctttcaacgtttattaccagcaaaatggggctacagatattgcttgcagttttggagggtcagggattaaagttgataagaacccaagctatgacagctgcatctatatgactgcagggagcaacaaaactatagctagtagtaatacaacggcaatatcttccacttcctcctctgccacgatgaagggagttccagcatggattttcacttgctttcttatgactttcatatcatttctttttattagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

482

Amino Acids

52.51

Weight (kDa)

5.11

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56590
fragaria_vesca	FvH4_1g06440
malus_domestica	MD02G1067800.v1.1 MD15G1199400.v1.1
prunus_persica	Prupe.7G217800_v2.0.a1 Prupe.7G217800_v2.0.a1
pyrus_communis	pycom02g05370 pycom15g17690
rosa_chinensis	RchiOBHm_Chr2g0092181
rosa_laevigata	RLG00000016283
rosa_multiflora	Rmu_sc0000524.1_g000021 Rmu_sc0030695.1_g000001 Rmu_sc0030696.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149400
rosa_rugosa	Rorug02G0023500 Rorug02G0023600 Rorug02G0023600
rosa_samantha	Rh2AG069200 Rh2CG069900
rosa_wichuraiana	Rw2G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	856
Acc36I	ACCTGC	2 cut(s)	355, 856
AccI	GTMKAC	1 cut(s)	966
AciI	CCGC	2 cut(s)	458, 1079
AclI	AACGTT	1 cut(s)	1203
AclWI	GGATC	3 cut(s)	12, 623, 766
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	4 cut(s)	30, 190, 506, 706
AcuI	CTGAAG	4 cut(s)	324, 395, 512, 1095
AfaI	GTAC	4 cut(s)	345, 415, 650, 1132
AfiI	CCNNNNNNNGG	4 cut(s)	458, 459, 638, 755
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	657
AgeI	ACCGGT	2 cut(s)	320, 638
AgsI	TTSAA	5 cut(s)	170, 895, 1032, 1062, 1201
AjnI	CCWGG	4 cut(s)	236, 856, 910, 972
AjuI	GAANNNNNNNTTGG	8 cut(s)	162, 194, 485, 517, 899, 931, 1030, 1062
Alw26I	GTCTC	4 cut(s)	308, 334, 731, 764
AlwI	GGATC	3 cut(s)	12, 623, 766
AoxI	GGCC	2 cut(s)	147, 746
ApeKI	GCWGC	5 cut(s)	77, 91, 474, 776, 1293
ApoI	RAATTY	4 cut(s)	30, 190, 506, 706
AsiGI	ACCGGT	2 cut(s)	320, 638
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	519, 753, 973
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	5 cut(s)	64, 103, 486, 763, 1280
BccI	CCATC	1 cut(s)	691
BceAI	ACGGC	2 cut(s)	733, 1362
BciT130I	CCWGG	4 cut(s)	238, 858, 912, 974
BcoDI	GTCTC	4 cut(s)	308, 334, 731, 764
BfaI	CTAG	3 cut(s)	438, 1146, 1332
BfmI	CTRYAG	3 cut(s)	1227, 1308, 1326
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	2 cut(s)	355, 856
BisI	GCNGC	5 cut(s)	78, 92, 475, 777, 1294
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	5 cut(s)	79, 93, 476, 778, 1295
Bme1390I	CCNGG	4 cut(s)	238, 858, 912, 974
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	4 cut(s)	238, 858, 912, 974
BmrI	ACTGGG	1 cut(s)	1111
BmsI	GCATC	7 cut(s)	491, 620, 655, 667, 1003, 1196, 1305
BmuI	ACTGGG	1 cut(s)	1111
BoxI	GACNNNNGTC	1 cut(s)	962
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	13, 424, 911
BsaWI	WCCGGW	3 cut(s)	320, 638, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	4 cut(s)	458, 459, 638, 755
Bse118I	RCCGGY	2 cut(s)	320, 638
Bse1I	ACTGG	5 cut(s)	166, 523, 844, 1026, 1106
Bse3DI	GCAATG	2 cut(s)	586, 1053
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	4 cut(s)	238, 858, 912, 974
BseDI	CCNNGG	3 cut(s)	13, 424, 911
BseGI	GGATG	1 cut(s)	611
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	4 cut(s)	458, 459, 638, 755
BseMI	GCAATG	2 cut(s)	586, 1053
BseMII	CTCAG	7 cut(s)	95, 227, 303, 630, 683, 726, 915
BseNI	ACTGG	5 cut(s)	166, 523, 844, 1026, 1106
BseRI	GAGGAG	1 cut(s)	1357
BseXI	GCAGC	5 cut(s)	64, 103, 486, 763, 1280
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	149, 748
BshTI	ACCGGT	2 cut(s)	320, 638
BsiSI	CCGG	4 cut(s)	269, 321, 639, 984
BslI	CCNNNNNNNGG	4 cut(s)	458, 459, 638, 755
BsmAI	GTCTC	4 cut(s)	308, 334, 731, 764
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	2 cut(s)	149, 748
Bso31I	GGTCTC	1 cut(s)	308
Bsp1407I	TGTACA	2 cut(s)	648, 1130
Bsp143I	GATC	5 cut(s)	4, 279, 440, 628, 758
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	458, 1079
BspANI	GGCC	2 cut(s)	149, 748
BspCNI	CTCAG	7 cut(s)	94, 226, 304, 629, 682, 727, 916
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	1312
BspMI	ACCTGC	2 cut(s)	355, 856
BspPI	GGATC	3 cut(s)	12, 623, 766
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	2 cut(s)	586, 1053
BsrFI	RCCGGY	2 cut(s)	320, 638
BsrGI	TGTACA	2 cut(s)	648, 1130
BsrI	ACTGG	5 cut(s)	166, 523, 844, 1026, 1106
BssAI	RCCGGY	2 cut(s)	320, 638
BssECI	CCNNGG	3 cut(s)	13, 424, 911
BssMI	GATC	5 cut(s)	4, 279, 440, 628, 758
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	4 cut(s)	238, 858, 912, 974
Bst4CI	ACNGT	3 cut(s)	295, 1130, 1177
Bst6I	CTCTTC	1 cut(s)	887
BstAFI	CTTAAG	1 cut(s)	242
BstAUI	TGTACA	2 cut(s)	648, 1130
BstC8I	GCNNGC	3 cut(s)	746, 1151, 1240
BstDEI	CTNAG	8 cut(s)	81, 213, 312, 389, 616, 669, 735, 924
BstF5I	GGATG	1 cut(s)	611
BstKTI	GATC	5 cut(s)	7, 282, 443, 631, 761
BstMAI	GTCTC	4 cut(s)	308, 334, 731, 764
BstMBI	GATC	5 cut(s)	4, 279, 440, 628, 758
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 91, 698, 1076, 1150, 1193, 1290
BstNI	CCWGG	4 cut(s)	238, 858, 912, 974
BstNSI	RCATGY	1 cut(s)	661
BstPAI	GACNNNNGTC	1 cut(s)	962
BstSCI	CCNGG	4 cut(s)	236, 856, 910, 972
BstSFI	CTRYAG	3 cut(s)	1227, 1308, 1326
BstV1I	GCAGC	5 cut(s)	64, 103, 486, 763, 1280
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	1220
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	149, 748
BtsCI	GGATG	1 cut(s)	611
BtsIMutI	CAGTG	4 cut(s)	159, 371, 692, 732
BveI	ACCTGC	2 cut(s)	355, 856
Cac8I	GCNNGC	3 cut(s)	746, 1151, 1240
CciI	TCATGA	1 cut(s)	534
Cfr10I	RCCGGY	2 cut(s)	320, 638
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	952
Csp6I	GTAC	4 cut(s)	344, 414, 649, 1131
CspAI	ACCGGT	2 cut(s)	320, 638
CviAII	CATG	7 cut(s)	352, 499, 535, 658, 824, 1184, 1395
CviQI	GTAC	4 cut(s)	344, 414, 649, 1131
DdeI	CTNAG	8 cut(s)	81, 213, 312, 389, 616, 669, 735, 924
DpnI	GATC	5 cut(s)	6, 281, 442, 630, 760
DpnII	GATC	5 cut(s)	4, 279, 440, 628, 758
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	887
EarI	CTCTTC	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	4 cut(s)	324, 395, 512, 1095
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	4 cut(s)	236, 856, 910, 972
EcoT14I	CCWWGG	1 cut(s)	13
EcoT22I	ATGCAT	2 cut(s)	484, 1189
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	7 cut(s)	355, 502, 538, 661, 827, 1187, 1398
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 1054, 1086
FatI	CATG	7 cut(s)	351, 498, 534, 657, 823, 1183, 1394
FauI	CCCGC	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	5 cut(s)	78, 92, 475, 777, 1294
FokI	GGATG	1 cut(s)	598
Fsp4HI	GCNGC	5 cut(s)	78, 92, 475, 777, 1294
FspBI	CTAG	3 cut(s)	438, 1146, 1332
GluI	GCNGC	5 cut(s)	78, 92, 475, 777, 1294
HaeIII	GGCC	2 cut(s)	149, 748
HapII	CCGG	4 cut(s)	269, 321, 639, 984
HgaI	GACGC	1 cut(s)	952
Hin1II	CATG	7 cut(s)	355, 502, 538, 661, 827, 1187, 1398
HindIII	AAGCTT	1 cut(s)	1068
HinfI	GANTC	5 cut(s)	125, 569, 817, 920, 1138
HpaII	CCGG	4 cut(s)	269, 321, 639, 984
HphI	GGTGA	3 cut(s)	519, 753, 973
Hpy166II	GTNNAC	5 cut(s)	416, 651, 967, 1126, 1133
Hpy188I	TCNGA	9 cut(s)	117, 196, 619, 672, 705, 713, 816, 925, 1075
Hpy188III	TCNNGA	6 cut(s)	438, 490, 535, 590, 785, 950
Hpy8I	GTNNAC	5 cut(s)	416, 651, 967, 1126, 1133
Hpy99I	CGWCG	1 cut(s)	754
HpyAV	CCTTC	4 cut(s)	68, 541, 859, 1375
HpyCH4III	ACNGT	3 cut(s)	295, 1130, 1177
HpyCH4IV	ACGT	1 cut(s)	1203
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 91, 698, 1076, 1150, 1193, 1290
HpyF3I	CTNAG	8 cut(s)	81, 213, 312, 389, 616, 669, 735, 924
HpySE526I	ACGT	1 cut(s)	1203
Hsp92II	CATG	7 cut(s)	355, 502, 538, 661, 827, 1187, 1398
Kzo9I	GATC	5 cut(s)	4, 279, 440, 628, 758
LmnI	GCTCC	2 cut(s)	299, 1314
Lsp1109I	GCAGC	5 cut(s)	64, 103, 486, 763, 1280
LweI	GCATC	7 cut(s)	491, 620, 655, 667, 1003, 1196, 1305
MaeI	CTAG	3 cut(s)	438, 1146, 1332
MaeII	ACGT	1 cut(s)	1203
MaeIII	GTNAC	5 cut(s)	307, 525, 583, 730, 1021
MalI	GATC	5 cut(s)	6, 281, 442, 630, 760
MboI	GATC	5 cut(s)	4, 279, 440, 628, 758
MboII	GAAGA	5 cut(s)	54, 388, 409, 874, 1347
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	5 cut(s)	30, 190, 506, 706, 931
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	3 cut(s)	277, 483, 897
Mph1103I	ATGCAT	2 cut(s)	484, 1189
MseI	TTAA	4 cut(s)	243, 402, 831, 1263
MslI	CAYNNNNRTG	2 cut(s)	656, 1301
MspA1I	CMGCKG	2 cut(s)	776, 1293
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	4 cut(s)	269, 321, 639, 984
MspR9I	CCNGG	4 cut(s)	238, 858, 912, 974
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	4 cut(s)	238, 858, 912, 974
MwoI	GCNNNNNNNGC	7 cut(s)	18, 91, 698, 1076, 1150, 1193, 1290
NdeII	GATC	5 cut(s)	4, 279, 440, 628, 758
NlaIII	CATG	7 cut(s)	355, 502, 538, 661, 827, 1187, 1398
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	3 cut(s)	525, 583, 730
NsiI	ATGCAT	2 cut(s)	484, 1189
NspI	RCATGY	1 cut(s)	661
PagI	TCATGA	1 cut(s)	534
PaqCI	CACCTGC	1 cut(s)	856
PceI	AGGCCT	1 cut(s)	149
PciI	ACATGT	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	1200
PctI	GAATGC	1 cut(s)	1096
PfeI	GAWTC	4 cut(s)	569, 817, 920, 1138
PinAI	ACCGGT	2 cut(s)	320, 638
PkrI	GCNGC	5 cut(s)	79, 93, 476, 778, 1295
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	657
PshAI	GACNNNNGTC	1 cut(s)	962
Psp1406I	AACGTT	1 cut(s)	1203
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	4 cut(s)	236, 856, 910, 972
PspGI	CCWGG	4 cut(s)	236, 856, 910, 972
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	1312
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	776, 1293
RsaI	GTAC	4 cut(s)	345, 415, 650, 1132
RsaNI	GTAC	4 cut(s)	344, 414, 649, 1131
RseI	CAYNNNNRTG	2 cut(s)	656, 1301
SaqAI	TTAA	4 cut(s)	243, 402, 831, 1263
SatI	GCNGC	5 cut(s)	78, 92, 475, 777, 1294
Sau3AI	GATC	5 cut(s)	4, 279, 440, 628, 758
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	238, 858, 912, 974
SfaNI	GCATC	7 cut(s)	491, 620, 655, 667, 1003, 1196, 1305
SfcI	CTRYAG	3 cut(s)	1227, 1308, 1326
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	2 cut(s)	656, 1301
SmlI	CTYRAG	2 cut(s)	143, 242
SmoI	CTYRAG	2 cut(s)	143, 242
Sse9I	AATT	5 cut(s)	30, 190, 506, 706, 931
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	458, 1079
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	3 cut(s)	438, 1146, 1332
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	236, 856, 910, 972
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	3 cut(s)	295, 1130, 1177
TaiI	ACGT	1 cut(s)	1206
TaqI	TCGA	1 cut(s)	752
TasI	AATT	5 cut(s)	30, 190, 506, 706, 931
TatI	WGTACW	3 cut(s)	413, 648, 1130
TfiI	GAWTC	4 cut(s)	569, 817, 920, 1138
Tru1I	TTAA	4 cut(s)	243, 402, 831, 1263
Tru9I	TTAA	4 cut(s)	243, 402, 831, 1263
TscAI	CASTG	4 cut(s)	166, 378, 699, 739
TseFI	GTSAC	3 cut(s)	525, 583, 730
TseI	GCWGC	5 cut(s)	77, 91, 474, 776, 1293
Tsp45I	GTSAC	3 cut(s)	525, 583, 730
TspDTI	ATGAA	5 cut(s)	523, 912, 1019, 1394, 1414
TspRI	CASTG	4 cut(s)	166, 378, 699, 739
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	4 cut(s)	30, 190, 506, 706
XbaI	TCTAGA	1 cut(s)	437
XceI	RCATGY	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	966
XspI	CTAG	3 cut(s)	438, 1146, 1332
Zsp2I	ATGCAT	2 cut(s)	484, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.