Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011352

Physical Location & Seq

Genomic Coordinates Forward (+)

5531247 .. 5532157

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1067800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATTACGGAGACTAATGTTACCAGTTCCAATGGAACGACACCGACATGGTGCATTGCTTCGAGTAAGGCTTCTGAACTCGACTTGCAGAATGCCTTGGATTGGGCTTGTGGTCCTGGGAATGTGGACTGTAGAGCTATTCAGCCTAGCCAGCCTTGTTTCGAGCCAGATAATACCGTTTCTCATGCATCGTACGCATTCAACAATTATTACCAGCAAAATGGGGCTACTGAAATTGCTTGCAGTTTCGGAGGAACAGGGATCAAGGTCGATAAGAACCCAAGCTATGACAACTGCATCTATATGACTACTGGGAGCAACAAAACCGTGCCAAGTAATACGACTGCAATATCTTCTACTTCTTCCTCTTCCACAATGTGCGGAGTTCCGGTGTGGATTTTTAGTTGCTTTCTGGTGACTTTCATGTCATTACTTTCCCCGGAGACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

151

Amino Acids

16.06

Weight (kDa)

4.5

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	16 - 87	6.8e-22	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56590
fragaria_vesca	FvH4_1g06440
malus_domestica	MD02G1067800.v1.1 MD15G1199400.v1.1
prunus_persica	Prupe.7G217800_v2.0.a1 Prupe.7G217800_v2.0.a1
pyrus_communis	pycom02g05370 pycom15g17690
rosa_chinensis	RchiOBHm_Chr2g0092181
rosa_laevigata	RLG00000016283
rosa_multiflora	Rmu_sc0000524.1_g000021 Rmu_sc0030695.1_g000001 Rmu_sc0030696.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149400
rosa_rugosa	Rorug02G0023500 Rorug02G0023600 Rorug02G0023600
rosa_samantha	Rh2AG069200 Rh2CG069900
rosa_wichuraiana	Rw2G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	137, 285
AluI	AGCT	2 cut(s)	137, 285
Alw26I	GTCTC	2 cut(s)	5, 437
AlwI	GGATC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	5, 437
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	117, 440
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	117, 440
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	197, 306
BmuI	ACTGGG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	96, 116, 438
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	24, 316
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	96, 116, 438
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	24, 316
BsiSI	CCGG	2 cut(s)	389, 440
BsiWI	CGTACG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	5, 437
BsmI	GAATGC	2 cut(s)	97, 197
Bso31I	GGTCTC	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	24, 316
BssECI	CCNNGG	3 cut(s)	96, 116, 438
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	131, 178, 328
Bst6I	CTCTTC	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	152, 241
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	5, 437
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 194
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	115, 438
BstSFI	CTRYAG	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	152, 241
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	48, 185, 424
CviJI	RGCY	9 cut(s)	71, 107, 137, 145, 150, 154, 166, 227, 285
CviKI_1	RGCY	9 cut(s)	71, 107, 137, 145, 150, 154, 166, 227, 285
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DraIII	CACNNNGTG	1 cut(s)	378
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	51, 188, 427
FaiI	YATR	6 cut(s)	49, 186, 288, 303, 305, 425
FatI	CATG	3 cut(s)	47, 184, 423
FspBI	CTAG	1 cut(s)	147
HapII	CCGG	2 cut(s)	389, 440
Hin1II	CATG	3 cut(s)	51, 188, 427
HpaII	CCGG	2 cut(s)	389, 440
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	76, 251
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	3 cut(s)	131, 178, 328
HpyCH4V	TGCA	6 cut(s)	54, 88, 188, 243, 297, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 194
Hsp92II	CATG	3 cut(s)	51, 188, 427
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	315
LweI	GCATC	2 cut(s)	197, 306
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	19, 415
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	345, 354, 360
MluCI	AATT	2 cut(s)	205, 234
MnlI	CCTC	2 cut(s)	245, 376
Mph1103I	ATGCAT	1 cut(s)	190
MslI	CAYNNNNRTG	2 cut(s)	46, 302
MspI	CCGG	2 cut(s)	389, 440
MspR9I	CCNGG	2 cut(s)	117, 440
Mva1269I	GAATGC	2 cut(s)	97, 197
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	151, 194
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	51, 188, 427
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	190
PctI	GAATGC	2 cut(s)	97, 197
Pfl23II	CGTACG	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspLI	CGTACG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	46, 302
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	117, 440
SetI	ASST	3 cut(s)	139, 270, 287
SfaNI	GCATC	2 cut(s)	197, 306
SfcI	CTRYAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	46, 302
Sse9I	AATT	2 cut(s)	205, 234
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	115, 438
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	131, 178, 328
TaqI	TCGA	4 cut(s)	62, 81, 162, 270
TasI	AATT	2 cut(s)	205, 234
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	113
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.