Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009543

Physical Location & Seq

Genomic Coordinates Forward (+)

22916692 .. 22918468

Gene Structure 1777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACCGATGAAACGGAGGAAGATGACACGACGCAGCAGCGATCATCACGAAACGACGGCGTTTCAAAGAATAAGGGTAAGGGTTTTAAGGGAGATAAAGCAAAGAGGGCTCTAATCGGAGCTGGTGGTCGGATCCTTTTTTACCCAACTCTTTTGTACAACCTCGTCCGCTTTAAACTCCAGTCTCAATTCCGATGGTGGGATCAAATCGATGAGTATCTTTTGATGGGAGCGGTTCCATTTCGTAAGGATGTTCCGAGACTAAAAAAGTTAGGTGTTGGTGGGGTAATCACTCTTAATGAACCTTATGAGACTTTGGTACCATCTTCTTTGTACAGTGCTTACGAAATGGAGCATCTAGTGATACCAACACGGGATTACTTGTTTGCTCCTTCAATTGTCGATATAACCTTAGCTGTAAACTTCATTCACAAGAATGCTTTACTTGGTAAAACAACATATGTCCATTGCAAAGCTGGTCGAGGAAGGAGTACTACTGTTGTTCTCTGTTATCTGATTGAACATAAGAGTATGACTGTGGCTGCAGCTTTCGAACACGTGCGCTCGATAAGACCCCGGGTTTTGTTGCATCCTTCGCAGAGGAAGGTTGTTGAGGAATTTAGCAGATTACAATCTCCTTTGAGCGAATCAACATTCATCGCAACCTCTGGTGATATTGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008962 GO:0009058 GO:0009987 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019866 GO:0023051 GO:0023057 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0032592 GO:0032879 GO:0032880 GO:0034593 GO:0034595 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046676 GO:0046883 GO:0046888 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051223 GO:0051224 GO:0052866 GO:0060341 GO:0061178 GO:0061179 GO:0065007 GO:0065008 GO:0070201 GO:0071704 GO:0090087 GO:0090276 GO:0090278 GO:0090407 GO:0098573 GO:0106019 GO:1901576 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

228

Amino Acids

25.73

Weight (kDa)

9.37

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	72 - 165	2e-16	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	75 - 134	8.3e-09	Polymorphic toxin system, DSP-PTPase phosphatase
PTP-SAK	PF22784	75 - 140	4.5e-08	Swiss Army Knife protein, DSP-PTPase phosphatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56610 AT5G56610
fragaria_vesca	FvH4_1g06520 FvH4_1g06520 FvH4_1g06520
malus_domestica	MD02G1068600.v1.1 MD15G1200100.v1.1
prunus_persica	Prupe.7G217100_v2.0.a1 Prupe.7G217100_v2.0.a1
pyrus_communis	pycom02g05430 pycom15g17760
rosa_chinensis	RchiOBHm_Chr2g0092271
rosa_laevigata	RLG00000016292
rosa_multiflora	Rmu_sc0003289.1_g000030
rosa_roxburghii	Rroxscaffold_2G00149310
rosa_rugosa	Rorug02G0024200 Rorug02G0024300
rosa_samantha	Rh2AG070200 Rh2BG069700 Rh2CG070900 Rh2DG068700
rosa_wichuraiana	Rw2G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	319
AccBSI	CCGCTC	1 cut(s)	233
AciI	CCGC	2 cut(s)	169, 233
AclWI	GGATC	3 cut(s)	127, 140, 210
AcsI	RAATTY	1 cut(s)	617
AcvI	CACGTG	1 cut(s)	559
AfaI	GTAC	4 cut(s)	158, 321, 335, 493
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	3 cut(s)	66, 396, 521
AluBI	AGCT	4 cut(s)	122, 416, 476, 548
AluI	AGCT	4 cut(s)	122, 416, 476, 548
Alw26I	GTCTC	3 cut(s)	189, 253, 305
AlwI	GGATC	3 cut(s)	127, 140, 210
Ama87I	CYCGRG	1 cut(s)	576
ApeKI	GCWGC	4 cut(s)	34, 37, 542, 545
ApoI	RAATTY	1 cut(s)	617
Asp718I	GGTACC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	564
AsuC2I	CCSGG	2 cut(s)	577, 578
AsuHPI	GGTGA	1 cut(s)	683
AsuII	TTCGAA	1 cut(s)	552
AvaI	CYCGRG	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BamHI	GGATCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	112
BarI	GAAGNNNNNNTAC	2 cut(s)	478, 510
BbrPI	CACGTG	1 cut(s)	559
BbvI	GCAGC	4 cut(s)	46, 49, 529, 557
BccI	CCATC	3 cut(s)	189, 220, 331
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	2 cut(s)	577, 578
BcoDI	GTCTC	3 cut(s)	189, 253, 305
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	4 cut(s)	35, 38, 543, 546
BlsI	GCNGC	4 cut(s)	36, 39, 544, 547
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	2 cut(s)	577, 578
BmeT110I	CYCGRG	1 cut(s)	576
BmiI	GGNNCC	3 cut(s)	134, 237, 321
BmrFI	CCNGG	2 cut(s)	577, 578
BmsI	GCATC	2 cut(s)	364, 598
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	412
Bpu14I	TTCGAA	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	577, 578
Bsa29I	ATCGAT	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	559
BsaBI	GATNNNNATC	2 cut(s)	216, 631
BsaJI	CCNNGG	2 cut(s)	575, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	2 cut(s)	216, 631
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	575, 576
BseGI	GGATG	2 cut(s)	256, 589
BseJI	GATNNNNATC	2 cut(s)	216, 631
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	466
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	46, 49, 529, 557
BshNI	GGYRCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	3 cut(s)	189, 253, 305
BsmI	GAATGC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	576
Bsp119I	TTCGAA	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp1407I	TGTACA	2 cut(s)	156, 333
Bsp143I	GATC	3 cut(s)	41, 132, 202
BspACI	CCGC	2 cut(s)	169, 233
BspDI	ATCGAT	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	134, 237, 321
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	3 cut(s)	127, 140, 210
BspT104I	TTCGAA	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	466
BsrGI	TGTACA	2 cut(s)	156, 333
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	575, 576
BssMI	GATC	3 cut(s)	41, 132, 202
Bst4CI	ACNGT	3 cut(s)	338, 499, 538
BstAUI	TGTACA	2 cut(s)	156, 333
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	256, 589
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	3 cut(s)	44, 135, 205
BstMAI	GTCTC	3 cut(s)	189, 253, 305
BstMBI	GATC	3 cut(s)	41, 132, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 595
BstSCI	CCNGG	2 cut(s)	575, 576
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	4 cut(s)	46, 49, 529, 557
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	256, 589
BtsIMutI	CAGTG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	564
Cfr9I	CCCGGG	1 cut(s)	576
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	157, 320, 334, 492
CviJI	RGCY	6 cut(s)	110, 122, 416, 476, 542, 548
CviKI_1	RGCY	6 cut(s)	110, 122, 416, 476, 542, 548
CviQI	GTAC	4 cut(s)	157, 320, 334, 492
DdeI	CTNAG	1 cut(s)	412
DpnI	GATC	3 cut(s)	43, 134, 204
DpnII	GATC	3 cut(s)	41, 132, 202
DraI	TTTAAA	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	112
Eco72I	CACGTG	1 cut(s)	559
Eco88I	CYCGRG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	112
FaiI	YATR	6 cut(s)	309, 407, 460, 462, 525, 533
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	4 cut(s)	35, 38, 543, 546
FokI	GGATG	2 cut(s)	263, 576
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	4 cut(s)	35, 38, 543, 546
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	4 cut(s)	35, 38, 543, 546
GsuI	CTGGAG	1 cut(s)	164
HapII	CCGG	1 cut(s)	577
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	564
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	1 cut(s)	647
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	5 cut(s)	119, 132, 194, 258, 516
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	2 cut(s)	34, 59
HpyAV	CCTTC	4 cut(s)	402, 480, 598, 603
HpyCH4III	ACNGT	3 cut(s)	338, 499, 538
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	471, 545, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 595
HpyF3I	CTNAG	1 cut(s)	412
HpySE526I	ACGT	1 cut(s)	558
HspAI	GCGC	1 cut(s)	562
KpnI	GGTACC	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	41, 132, 202
LmnI	GCTCC	4 cut(s)	119, 230, 352, 394
LpnPI	CCDG	5 cut(s)	108, 194, 462, 590, 654
Lsp1109I	GCAGC	4 cut(s)	46, 49, 529, 557
LweI	GCATC	2 cut(s)	364, 598
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	558
MalI	GATC	3 cut(s)	43, 134, 204
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	3 cut(s)	41, 132, 202
MboII	GAAGA	2 cut(s)	32, 318
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	3 cut(s)	188, 396, 617
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	10, 99, 173, 476, 594, 607, 676
MseI	TTAA	4 cut(s)	87, 174, 297, 685
MslI	CAYNNNNRTG	1 cut(s)	435
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	2 cut(s)	577, 578
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	107, 595
NciI	CCSGG	2 cut(s)	577, 578
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	3 cut(s)	41, 132, 202
NlaIV	GGNNCC	3 cut(s)	134, 237, 321
NspV	TTCGAA	1 cut(s)	552
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	647
PkrI	GCNGC	4 cut(s)	36, 39, 544, 547
PmaCI	CACGTG	1 cut(s)	559
PmlI	CACGTG	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	559
PspCI	CACGTG	1 cut(s)	559
PspN4I	GGNNCC	3 cut(s)	134, 237, 321
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	4 cut(s)	158, 321, 335, 493
RsaNI	GTAC	4 cut(s)	157, 320, 334, 492
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	4 cut(s)	87, 174, 297, 685
SatI	GCNGC	4 cut(s)	35, 38, 543, 546
Sau3AI	GATC	3 cut(s)	41, 132, 202
ScaI	AGTACT	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	577, 578
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	2 cut(s)	364, 598
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	552
SmaI	CCCGGG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	3 cut(s)	188, 396, 617
SsiI	CCGC	2 cut(s)	169, 233
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	575, 576
TaaI	ACNGT	3 cut(s)	338, 499, 538
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	5 cut(s)	210, 402, 481, 552, 566
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	188, 396, 617
TatI	WGTACW	3 cut(s)	156, 333, 491
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	4 cut(s)	87, 174, 297, 685
Tru9I	TTAA	4 cut(s)	87, 174, 297, 685
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	4 cut(s)	34, 37, 542, 545
TspDTI	ATGAA	4 cut(s)	24, 315, 415, 646
TspGWI	ACGGA	1 cut(s)	29
TspMI	CCCGGG	1 cut(s)	576
TspRI	CASTG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmaI	CCCGGG	1 cut(s)	576
XspI	CTAG	1 cut(s)	359
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.