MD15G1200100.v1.1

dual specificity protein phosphatase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
15906490 .. 15910041
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1200100.v1.1.491

Sequence Viewer

Length: 924 bp
ATGAAGATCGAGGAACTGGAGGCGGAGTGGGATTGCGATCGGAACGACGGCCTTTACGGGAGGCAGATAGTTGGGGTTGACGACGCCAAGCGAGCACTCGTTGGAGCCGGGGCGCGGATCCTCTTTTACCCGACCCTGTTGTATAATGTGCTGCGGAACAAGATGGAAGCTGAGTTCAGATGGTGGGATGAAGTTGACCAGTTTGTTCTCCTCGGTGCGGTTCCATTTCCCAAAGACGTTCCCCAGTTGAAGCGGCTAGGTGTTGGTGGTGTTATCACTCTCAACGAACCTTACGAAACTTTGGTTCCGACATCCTTGTATCGTGCCCATGGGATTGACCATCTTGTAATTCCCACGCGAGATTATCTATTTGCTCCTTCATTTGTTGATATTGACAGGGCTGTAGAATTCATTCACAAGAATGCATCCTGTGGTGAAATTACTTATGTGCACTGTAAAGCTGGTCGGGGAAGGAGCACAACTATCGTGCTTTGCTATTTGTTACTGATGATGAGCCCTTGTCAACCTCTAGGACATTATAGGATTGAATTGATTTGCTTTCTGCAGGTGAAATACAAGAACATGACACCATCTGCAGCCCTAGACTATGTCCGGTCTAGAAGACCACGTGTGCTGCTAGCCCCCTCACAATGGAAGGCTGTTCAAGAATACAGCAGATGTGGATCAACTACCGCAGCATGTTCTCCCTCAGGAGATGCAGTTTTAATTACCAAAGATGATCTTGAAGGGTACCATGGAACTTACGACGACACTGCTCATAAGCAGTTGGCAATTGTTCCCAAAATGGTGAAAGTCAGCCCCATGATAGCTAGGTTATCATGCCTTTTCGCATCCTTGAAAGTCTCAGGAAATTGTGGACCAGTCACGAGGCGGTTGTCTGTGCCGGAGCCACGTGCTTGCTGA

Protein Analysis

308

Amino Acids

34.37

Weight (kDa)

8.42

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTP-SAK PF22784 78 - 212 6.8e-13 Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P PF22785 81 - 168 2.4e-10 Polymorphic toxin system, DSP-PTPase phosphatase
DSPc PF00782 84 - 168 4.2e-10 Dual specificity phosphatase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 556
Acc36I ACCTGC 1 cut(s) 556
Acc65I GGTACC 1 cut(s) 750
AccB1I GGYRCC 1 cut(s) 750
AccII CGCG 2 cut(s) 115, 358
AciI CCGC 7 cut(s) 23, 115, 154, 218, 253, 693, 892
AclWI GGATC 3 cut(s) 112, 125, 691
AcsI RAATTY 1 cut(s) 407
AcvI CACGTG 2 cut(s) 629, 914
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 752
AfiI CCNNNNNNNGG 3 cut(s) 114, 217, 651
AflIII ACRYGT 1 cut(s) 628
AgsI TTSAA 5 cut(s) 250, 548, 665, 746, 859
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 3 cut(s) 170, 461, 830
AluI AGCT 3 cut(s) 170, 461, 830
Alw21I GWGCWC 3 cut(s) 97, 453, 479
Alw26I GTCTC 1 cut(s) 868
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 3 cut(s) 112, 125, 691
AoxI GGCC 1 cut(s) 49
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 151, 596, 634, 695
ApoI RAATTY 1 cut(s) 407
Asp700I GAANNNNTTC 1 cut(s) 411
Asp718I GGTACC 1 cut(s) 750
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 878
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 3 cut(s) 446, 580, 820
AsuNHI GCTAGC 1 cut(s) 637
AvaII GGWCC 1 cut(s) 878
AxyI CCTNAGG 1 cut(s) 709
BaeGI GKGCMC 2 cut(s) 328, 453
BamHI GGATCC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 750
BanII GRGCYC 1 cut(s) 518
BauI CACGAG 1 cut(s) 886
BbrPI CACGTG 2 cut(s) 629, 914
BbsI GAAGAC 1 cut(s) 628
Bbv12I GWGCWC 3 cut(s) 97, 453, 479
BbvI GCAGC 4 cut(s) 138, 608, 621, 707
BccI CCATC 4 cut(s) 157, 174, 348, 598
BceAI ACGGC 1 cut(s) 64
BcgI CGANNNNNNTGC 4 cut(s) 466, 500, 755, 789
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 868
BfaI CTAG 6 cut(s) 257, 530, 602, 618, 638, 831
BfmI CTRYAG 3 cut(s) 402, 563, 594
BfuAI ACCTGC 1 cut(s) 556
BisI GCNGC 5 cut(s) 152, 254, 597, 635, 696
BlsI GCNGC 5 cut(s) 153, 255, 598, 636, 697
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 878
BmgT120I GGNCC 1 cut(s) 878
BmiI GGNNCC 6 cut(s) 106, 119, 222, 306, 752, 909
BmrFI CCNGG 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 3 cut(s) 434, 706, 860
BmtI GCTAGC 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 628
BpmI CTGGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 109
BsaAI YACGTR 2 cut(s) 629, 914
BsaBI GATNNNNATC 2 cut(s) 36, 682
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 4 cut(s) 108, 211, 328, 754
BsaWI WCCGGW 1 cut(s) 612
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 705, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 217, 651
Bse1I ACTGG 4 cut(s) 21, 199, 244, 881
Bse21I CCTNAGG 1 cut(s) 709
Bse8I GATNNNNATC 2 cut(s) 36, 682
BseDI CCNNGG 4 cut(s) 108, 211, 328, 754
BseGI GGATG 4 cut(s) 193, 311, 425, 851
BseJI GATNNNNATC 2 cut(s) 36, 682
BseLI CCNNNNNNNGG 3 cut(s) 114, 217, 651
BseMII CTCAG 3 cut(s) 162, 723, 879
BseNI ACTGG 4 cut(s) 21, 199, 244, 881
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 2 cut(s) 328, 453
BseXI GCAGC 4 cut(s) 138, 608, 621, 707
Bsh1236I CGCG 2 cut(s) 115, 358
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 3 cut(s) 97, 453, 479
BsiSI CCGG 3 cut(s) 108, 613, 905
BslI CCNNNNNNNGG 3 cut(s) 114, 217, 651
BsmAI GTCTC 1 cut(s) 868
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 5 cut(s) 97, 328, 453, 479, 518
Bsp143I GATC 5 cut(s) 6, 37, 117, 683, 739
Bsp19I CCATGG 2 cut(s) 328, 754
BspACI CCGC 7 cut(s) 23, 115, 154, 218, 253, 693, 892
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 3 cut(s) 163, 722, 878
BspFNI CGCG 2 cut(s) 115, 358
BspLI GGNNCC 6 cut(s) 106, 119, 222, 306, 752, 909
BspMAI CTGCAG 2 cut(s) 567, 598
BspMI ACCTGC 1 cut(s) 556
BspOI GCTAGC 1 cut(s) 641
BspPI GGATC 3 cut(s) 112, 125, 691
BspT107I GGYRCC 1 cut(s) 750
BsrI ACTGG 4 cut(s) 21, 199, 244, 881
BssECI CCNNGG 4 cut(s) 108, 211, 328, 754
BssMI GATC 5 cut(s) 6, 37, 117, 683, 739
BssNI GRCGYC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 886
BssT1I CCWWGG 2 cut(s) 328, 754
Bst2BI CACGAG 1 cut(s) 886
Bst4CI ACNGT 1 cut(s) 455
BstACI GRCGYC 1 cut(s) 84
BstBAI YACGTR 2 cut(s) 629, 914
BstC8I GCNNGC 3 cut(s) 93, 639, 919
BstDEI CTNAG 3 cut(s) 171, 709, 865
BstDSI CCRYGG 2 cut(s) 328, 754
BstF5I GGATG 4 cut(s) 193, 311, 425, 851
BstFNI CGCG 2 cut(s) 115, 358
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 5 cut(s) 9, 40, 120, 686, 742
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 5 cut(s) 6, 37, 117, 683, 739
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 702
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 3 cut(s) 402, 563, 594
BstSLI GKGCMC 2 cut(s) 328, 453
BstUI CGCG 2 cut(s) 115, 358
BstV1I GCAGC 4 cut(s) 138, 608, 621, 707
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 709
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 2 cut(s) 328, 754
BtsCI GGATG 4 cut(s) 193, 311, 425, 851
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 451, 771
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 3 cut(s) 93, 639, 919
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 878
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 751
CviAII CATG 6 cut(s) 329, 583, 699, 755, 823, 840
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 3 cut(s) 171, 709, 865
DpnI GATC 5 cut(s) 8, 39, 119, 685, 741
DpnII GATC 5 cut(s) 6, 37, 117, 683, 739
EciI GGCGGA 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 328, 754
Eco24I GRGCYC 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 878
Eco72I CACGTG 2 cut(s) 629, 914
Eco81I CCTNAGG 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 407
EcoT14I CCWWGG 2 cut(s) 328, 754
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 2 cut(s) 328, 754
FaeI CATG 6 cut(s) 332, 586, 702, 758, 826, 843
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FatI CATG 6 cut(s) 328, 582, 698, 754, 822, 839
Fnu4HI GCNGC 5 cut(s) 152, 254, 597, 635, 696
FokI GGATG 4 cut(s) 200, 298, 412, 838
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 5 cut(s) 152, 254, 597, 635, 696
FspBI CTAG 6 cut(s) 257, 530, 602, 618, 638, 831
GlaI GCGC 1 cut(s) 114
GluI GCNGC 5 cut(s) 152, 254, 597, 635, 696
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 51
HapII CCGG 3 cut(s) 108, 613, 905
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 6 cut(s) 332, 586, 702, 758, 826, 843
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 3 cut(s) 79, 196, 524
HindII GTYRAC 3 cut(s) 79, 196, 524
HpaII CCGG 3 cut(s) 108, 613, 905
HphI GGTGA 3 cut(s) 446, 580, 820
Hpy166II GTNNAC 5 cut(s) 79, 196, 451, 524, 878
Hpy188I TCNGA 3 cut(s) 42, 179, 309
Hpy188III TCNNGA 6 cut(s) 618, 665, 711, 743, 867, 886
Hpy8I GTNNAC 5 cut(s) 79, 196, 451, 524, 878
Hpy99I CGWCG 3 cut(s) 50, 86, 770
HpyAV CCTTC 4 cut(s) 387, 465, 649, 740
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 3 cut(s) 237, 628, 913
HpyCH4V TGCA 5 cut(s) 425, 451, 565, 596, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 171, 709, 865
HpySE526I ACGT 3 cut(s) 237, 628, 913
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 6 cut(s) 332, 586, 702, 758, 826, 843
HspAI GCGC 1 cut(s) 113
KpnI GGTACC 1 cut(s) 754
Kzo9I GATC 5 cut(s) 6, 37, 117, 683, 739
LmnI GCTCC 4 cut(s) 104, 379, 474, 907
Lsp1109I GCAGC 4 cut(s) 138, 608, 621, 707
LweI GCATC 3 cut(s) 434, 706, 860
MaeI CTAG 6 cut(s) 257, 530, 602, 618, 638, 831
MaeII ACGT 3 cut(s) 237, 628, 913
MaeIII GTNAC 2 cut(s) 501, 883
MalI GATC 5 cut(s) 8, 39, 119, 685, 741
MboI GATC 5 cut(s) 6, 37, 117, 683, 739
MboII GAAGA 2 cut(s) 16, 633
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 5 cut(s) 97, 328, 453, 479, 518
MluCI AATT 7 cut(s) 348, 407, 438, 548, 726, 792, 871
MmeI TCCRAC 2 cut(s) 82, 332
MnlI CCTC 9 cut(s) 4, 13, 54, 131, 221, 537, 655, 718, 882
Mph1103I ATGCAT 1 cut(s) 427
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 3 cut(s) 108, 613, 905
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 1 cut(s) 427
MvnI CGCG 2 cut(s) 115, 358
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 109
NcoI CCATGG 2 cut(s) 328, 754
NdeII GATC 5 cut(s) 6, 37, 117, 683, 739
NheI GCTAGC 1 cut(s) 637
NlaIII CATG 6 cut(s) 332, 586, 702, 758, 826, 843
NlaIV GGNNCC 6 cut(s) 106, 119, 222, 306, 752, 909
NmuCI GTSAC 1 cut(s) 883
NsiI ATGCAT 1 cut(s) 427
NspI RCATGY 1 cut(s) 702
PaqCI CACCTGC 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 411
PflFI GACNNNGTC 1 cut(s) 608
PkrI GCNGC 5 cut(s) 153, 255, 598, 636, 697
Ple19I CGATCG 1 cut(s) 40
PmaCI CACGTG 2 cut(s) 629, 914
PmlI CACGTG 2 cut(s) 629, 914
Ppu21I YACGTR 2 cut(s) 629, 914
PspCI CACGTG 2 cut(s) 629, 914
PspN4I GGNNCC 6 cut(s) 106, 119, 222, 306, 752, 909
PspPI GGNCC 1 cut(s) 878
PstI CTGCAG 2 cut(s) 567, 598
PsuI RGATCY 1 cut(s) 117
PsyI GACNNNGTC 1 cut(s) 608
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 5 cut(s) 152, 254, 597, 635, 696
Sau3AI GATC 5 cut(s) 6, 37, 117, 683, 739
Sau96I GGNCC 1 cut(s) 878
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 5 cut(s) 97, 328, 453, 479, 518
SfaNI GCATC 3 cut(s) 434, 706, 860
SfcI CTRYAG 3 cut(s) 402, 563, 594
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 1 cut(s) 420
Sse9I AATT 7 cut(s) 348, 407, 438, 548, 726, 792, 871
SsiI CCGC 7 cut(s) 23, 115, 154, 218, 253, 693, 892
SspMI CTAG 6 cut(s) 257, 530, 602, 618, 638, 831
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 2 cut(s) 328, 754
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 3 cut(s) 240, 631, 916
TaqI TCGA 1 cut(s) 9
TasI AATT 7 cut(s) 348, 407, 438, 548, 726, 792, 871
TauI GCSGC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 2 cut(s) 458, 778
TseFI GTSAC 1 cut(s) 883
TseI GCWGC 4 cut(s) 151, 596, 634, 695
Tsp45I GTSAC 1 cut(s) 883
TspDTI ATGAA 4 cut(s) 17, 204, 369, 400
TspRI CASTG 2 cut(s) 458, 778
Tth111I GACNNNGTC 1 cut(s) 608
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 878
XapI RAATTY 1 cut(s) 407
XbaI TCTAGA 1 cut(s) 617
XceI RCATGY 1 cut(s) 702
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 6 cut(s) 257, 530, 602, 618, 638, 831
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.