Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009543

Physical Location & Seq

Genomic Coordinates Forward (+)

5246906 .. 5250363

Gene Structure 3458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG069700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGGATCGAGCAATTGGATGAGCCGGAGTTGGATCGGAGCGAAGGGAGGCAGATTGTGAGGGTTGACGAAGCGAAGAGAGCCCTGGTCGGAGCCGGGGCTCGGATCCTGTTTTACCCGACCCTTTTGTATAATGTGCTTCGGAATAAGATGGAAGCTGAGTTCAGATGGTGGGATGAAGTTGACCAGTTTGTGCTCCTTGGCGCGGTTCCATTCCCCAAAGATGTTCCCCAGCTGAAGCGACTTGGTGTTGGCGGCGTTATCACGCTCAACGAATCTTATGAAACTTTGGTTCCTTCCTCCCTGTATCATGCCCATGGAATTGAGCATGTAGTAATCCCCACACGTGATTATCTCTTTGCACCTTCATTTGAAGATATCAGCAGGGCTGTGGAGTTCATTCACAAGAATGCATCATGTGGTAGAACTACTTATGTTCACTGCAAAGCAGGTCGGGGAAGGAGCACTACTATTGTGCTTTGCTATTTGGTGGAATACAAGAATATGACCCCGTCTGCTGCCCTGGAGTATGTGCGATCCAGAAGGCCTCGTGTGCTGCTTGCCCCCTCACAGTGGAAGGTATGTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008962 GO:0009058 GO:0009987 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019866 GO:0023051 GO:0023057 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0032592 GO:0032879 GO:0032880 GO:0034593 GO:0034595 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046676 GO:0046883 GO:0046888 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051223 GO:0051224 GO:0052866 GO:0060341 GO:0061178 GO:0061179 GO:0065007 GO:0065008 GO:0070201 GO:0071704 GO:0090087 GO:0090276 GO:0090278 GO:0090407 GO:0098573 GO:0106019 GO:1901576 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

197

Amino Acids

22.51

Weight (kDa)

8.67

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	74 - 174	1.5e-13	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	77 - 193	1.4e-19	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	77 - 165	4.2e-12	Polymorphic toxin system, DSP-PTPase phosphatase
PTP-NADK	PF22741	97 - 165	9.8e-07	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56610 AT5G56610
fragaria_vesca	FvH4_1g06520 FvH4_1g06520 FvH4_1g06520
malus_domestica	MD02G1068600.v1.1 MD15G1200100.v1.1
prunus_persica	Prupe.7G217100_v2.0.a1 Prupe.7G217100_v2.0.a1
pyrus_communis	pycom02g05430 pycom15g17760
rosa_chinensis	RchiOBHm_Chr2g0092271
rosa_laevigata	RLG00000016292
rosa_multiflora	Rmu_sc0003289.1_g000030
rosa_roxburghii	Rroxscaffold_2G00149310
rosa_rugosa	Rorug02G0024200 Rorug02G0024300
rosa_samantha	Rh2AG070200 Rh2BG069700 Rh2CG070900 Rh2DG068700
rosa_wichuraiana	Rw2G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccII	CGCG	1 cut(s)	206
AciI	CCGC	2 cut(s)	206, 255
AclWI	GGATC	5 cut(s)	14, 42, 100, 113, 531
AcuI	CTGAAG	1 cut(s)	257
AcvI	CACGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	102, 205, 573
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	84, 522
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	2 cut(s)	158, 235
AluI	AGCT	2 cut(s)	158, 235
Alw21I	GWGCWC	2 cut(s)	198, 467
AlwI	GGATC	5 cut(s)	14, 42, 100, 113, 531
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	518, 556
AspLEI	GCGC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	85, 103
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
BauI	CACGAG	1 cut(s)	549
BbrPI	CACGTG	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	198, 467
BbvI	GCAGC	2 cut(s)	505, 543
BccI	CCATC	2 cut(s)	145, 162
BciT130I	CCWGG	2 cut(s)	86, 524
BcnI	CCSGG	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	256, 519, 557
BlsI	GCNGC	3 cut(s)	257, 520, 558
Bme1390I	CCNGG	3 cut(s)	86, 97, 524
BmiI	GGNNCC	4 cut(s)	94, 107, 210, 294
BmrFI	CCNGG	3 cut(s)	86, 97, 524
BmsI	GCATC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	5 cut(s)	84, 96, 199, 316, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 205, 573
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	86, 524
BseDI	CCNNGG	5 cut(s)	84, 96, 199, 316, 522
BseGI	GGATG	2 cut(s)	25, 181
BseLI	CCNNNNNNNGG	3 cut(s)	102, 205, 573
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	505, 543
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	547
BsiHKAI	GWGCWC	2 cut(s)	198, 467
BsiSI	CCGG	2 cut(s)	26, 96
BslI	CCNNNNNNNGG	3 cut(s)	102, 205, 573
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	547
Bsp1286I	GDGCHC	4 cut(s)	85, 103, 198, 467
Bsp143I	GATC	4 cut(s)	6, 34, 105, 536
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	2 cut(s)	206, 255
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	94, 107, 210, 294
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	5 cut(s)	14, 42, 100, 113, 531
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	5 cut(s)	84, 96, 199, 316, 522
BssMI	GATC	4 cut(s)	6, 34, 105, 536
BssSI	CACGAG	1 cut(s)	549
BssT1I	CCWWGG	2 cut(s)	199, 316
Bst2BI	CACGAG	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	86, 524
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	25, 181
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	4 cut(s)	9, 37, 108, 539
BstMBI	GATC	4 cut(s)	6, 34, 105, 536
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 553
BstNI	CCWGG	2 cut(s)	86, 524
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	84, 95, 522
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	505, 543
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	25, 181
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	439, 578
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	561
CfoI	GCGC	1 cut(s)	206
CviAII	CATG	4 cut(s)	311, 317, 329, 417
CviJI	RGCY	8 cut(s)	25, 83, 95, 101, 158, 235, 389, 547
CviKI_1	RGCY	8 cut(s)	25, 83, 95, 101, 158, 235, 389, 547
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	4 cut(s)	8, 36, 107, 538
DpnII	GATC	4 cut(s)	6, 34, 105, 536
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	199, 316
Eco147I	AGGCCT	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	85, 103
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	257
Eco72I	CACGTG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	84, 522
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	199, 316
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	2 cut(s)	85, 103
ErhI	CCWWGG	2 cut(s)	199, 316
FaeI	CATG	4 cut(s)	314, 320, 332, 420
FatI	CATG	4 cut(s)	310, 316, 328, 416
Fnu4HI	GCNGC	3 cut(s)	256, 519, 557
FokI	GGATG	2 cut(s)	32, 188
FriOI	GRGCYC	2 cut(s)	85, 103
Fsp4HI	GCNGC	3 cut(s)	256, 519, 557
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	3 cut(s)	256, 519, 557
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	545
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	2 cut(s)	26, 96
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	4 cut(s)	314, 320, 332, 420
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	2 cut(s)	67, 184
HindII	GTYRAC	2 cut(s)	67, 184
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	26, 96
Hpy166II	GTNNAC	3 cut(s)	67, 184, 439
Hpy188I	TCNGA	5 cut(s)	39, 92, 105, 144, 167
Hpy188III	TCNNGA	1 cut(s)	540
Hpy8I	GTNNAC	3 cut(s)	67, 184, 439
HpyAV	CCTTC	6 cut(s)	38, 306, 375, 453, 537, 571
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	3 cut(s)	362, 413, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 553
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	4 cut(s)	314, 320, 332, 420
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	6, 34, 105, 536
LmnI	GCTCC	4 cut(s)	39, 92, 201, 462
Lsp1109I	GCAGC	2 cut(s)	505, 543
LweI	GCATC	1 cut(s)	422
MaeII	ACGT	1 cut(s)	346
MalI	GATC	4 cut(s)	8, 36, 107, 538
MboI	GATC	4 cut(s)	6, 34, 105, 536
MboII	GAAGA	2 cut(s)	88, 386
MfeI	CAATTG	1 cut(s)	14
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	4 cut(s)	85, 103, 198, 467
MluCI	AATT	2 cut(s)	14, 321
MmeI	TCCRAC	2 cut(s)	12, 70
MnlI	CCTC	5 cut(s)	42, 54, 310, 558, 577
Mph1103I	ATGCAT	1 cut(s)	415
MslI	CAYNNNNRTG	2 cut(s)	315, 408
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	2 cut(s)	26, 96
MspR9I	CCNGG	3 cut(s)	86, 97, 524
MunI	CAATTG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	2 cut(s)	86, 524
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	80, 553
NciI	CCSGG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	4 cut(s)	6, 34, 105, 536
NlaIII	CATG	4 cut(s)	314, 320, 332, 420
NlaIV	GGNNCC	4 cut(s)	94, 107, 210, 294
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	547
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	275
PflFI	GACNNNGTC	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	257, 520, 558
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	84, 522
PspCI	CACGTG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	2 cut(s)	84, 522
PspN4I	GGNNCC	4 cut(s)	94, 107, 210, 294
PsuI	RGATCY	1 cut(s)	105
PsyI	GACNNNGTC	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	235
RseI	CAYNNNNRTG	2 cut(s)	315, 408
SatI	GCNGC	3 cut(s)	256, 519, 557
Sau3AI	GATC	4 cut(s)	6, 34, 105, 536
ScrFI	CCNGG	3 cut(s)	86, 97, 524
SduI	GDGCHC	4 cut(s)	85, 103, 198, 467
SetI	ASST	6 cut(s)	160, 237, 349, 367, 454, 582
SfaNI	GCATC	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	315, 408
Sse9I	AATT	2 cut(s)	14, 321
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	2 cut(s)	206, 255
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	3 cut(s)	84, 95, 522
StyI	CCWWGG	2 cut(s)	199, 316
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	9
TasI	AATT	2 cut(s)	14, 321
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	275
TscAI	CASTG	2 cut(s)	446, 578
TseI	GCWGC	2 cut(s)	518, 556
TspDTI	ATGAA	4 cut(s)	192, 297, 357, 388
TspRI	CASTG	2 cut(s)	446, 578
Tth111I	GACNNNGTC	1 cut(s)	511
XceI	RCATGY	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.