Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009543

Physical Location & Seq

Genomic Coordinates Forward (+)

5790109 .. 5792764

Gene Structure 2656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTTGATGAGTTTCAGGCCCATGGAATTGAGCATGTAGTAATCCCCACACGTGATTATCTCTTTGCCCCTTCATTTGAAGATATCAGCAGGGCTGTGGAGTTCATTCACAAGAACGCATCATGTGGTAGAACTACTTATGTTCACTGCAAAGCAGGTCGGGGAAGGAGCACTACTATTGTGCTTTGCTATTTGGTGGAATACAAGAATATGACCCCGTCTGCTGCCCTGGAGTATGTGCGATCCAGAAGGCCTCGTGTGCTGCTTGCCCCCTCACAGTGGAAGGCTGTTCAAGAATACAGCAGATGTTGTAGAGCTACCACTGCATGCTCTCCCTCAGGAGATGCAGTTCTTATTACAAAAGATGATCTCGAAGGTTATCATGGCAGTTATGACAATACTGCTCGTAAGCAGTTGGCAATGGTACCTAAGATTGTGAAATCCAGCCCCATGATAGCGCGCTTGTCCTGCCTTTTTGCGTCCTTGAAAGTTTCCGGTGGACCAGTCACAAGGCGGCTGCCAGTTCCAGAGCCACGCGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008962 GO:0009058 GO:0009987 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019866 GO:0023051 GO:0023057 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0032592 GO:0032879 GO:0032880 GO:0034593 GO:0034595 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046676 GO:0046883 GO:0046888 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051223 GO:0051224 GO:0052866 GO:0060341 GO:0061178 GO:0061179 GO:0065007 GO:0065008 GO:0070201 GO:0071704 GO:0090087 GO:0090276 GO:0090278 GO:0090407 GO:0098573 GO:0106019 GO:1901576 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

181

Amino Acids

20.16

Weight (kDa)

9.28

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tc-R-P	PF22785	5 - 67	3.1e-10	Polymorphic toxin system, DSP-PTPase phosphatase
PTP-SAK	PF22784	7 - 77	2.8e-10	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	8 - 102	1.2e-19	Dual specificity phosphatase, catalytic domain
PTP-NADK	PF22741	9 - 67	1.6e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0009543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56610 AT5G56610
fragaria_vesca	FvH4_1g06520 FvH4_1g06520 FvH4_1g06520
malus_domestica	MD02G1068600.v1.1 MD15G1200100.v1.1
prunus_persica	Prupe.7G217100_v2.0.a1 Prupe.7G217100_v2.0.a1
pyrus_communis	pycom02g05430 pycom15g17760
rosa_chinensis	RchiOBHm_Chr2g0092271
rosa_laevigata	RLG00000016292
rosa_multiflora	Rmu_sc0003289.1_g000030
rosa_roxburghii	Rroxscaffold_2G00149310
rosa_rugosa	Rorug02G0024200 Rorug02G0024300
rosa_samantha	Rh2AG070200 Rh2BG069700 Rh2CG070900 Rh2DG068700
rosa_wichuraiana	Rw2G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	424
AccII	CGCG	2 cut(s)	460, 537
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	80, 293, 487
AjnI	CCWGG	1 cut(s)	228
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	2 cut(s)	18, 251
ApeKI	GCWGC	3 cut(s)	224, 262, 517
Asp718I	GGTACC	1 cut(s)	424
AspLEI	GCGC	3 cut(s)	460, 462, 539
AspS9I	GGNCC	2 cut(s)	19, 500
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	424
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
BauI	CACGAG	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	211, 249, 504
BciT130I	CCWGG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	225, 263, 515, 518
BlsI	GCNGC	4 cut(s)	226, 264, 516, 519
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	19, 500
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	128, 334
BpmI	CTGGAG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	22, 228
BsaWI	WCCGGW	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	503, 521
Bse21I	CCTNAGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	22, 228
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	503, 521
BsePI	GCGCGC	1 cut(s)	458
BseXI	GCAGC	3 cut(s)	211, 249, 504
Bsh1236I	CGCG	2 cut(s)	460, 537
BshFI	GGCC	2 cut(s)	20, 253
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	2 cut(s)	20, 253
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	242, 367
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	514
BspANI	GGCC	2 cut(s)	20, 253
BspCNI	CTCAG	1 cut(s)	350
BspFNI	CGCG	2 cut(s)	460, 537
BspLI	GGNNCC	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	503, 521
BssECI	CCNNGG	2 cut(s)	22, 228
BssHII	GCGCGC	1 cut(s)	458
BssMI	GATC	2 cut(s)	242, 367
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	4 cut(s)	267, 328, 460, 541
BstDEI	CTNAG	2 cut(s)	337, 429
BstDSI	CCRYGG	1 cut(s)	22
BstFNI	CGCG	2 cut(s)	460, 537
BstHHI	GCGC	3 cut(s)	460, 462, 539
BstKTI	GATC	2 cut(s)	245, 370
BstMBI	GATC	2 cut(s)	242, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 323, 468
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	2 cut(s)	38, 330
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	2 cut(s)	460, 537
BstV1I	GCAGC	3 cut(s)	211, 249, 504
Bsu36I	CCTNAGG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	20, 253
BtgI	CCRYGG	1 cut(s)	22
BtsI	GCAGTG	2 cut(s)	145, 321
BtsIMutI	CAGTG	3 cut(s)	145, 284, 321
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	4 cut(s)	267, 328, 460, 541
CfoI	GCGC	3 cut(s)	460, 462, 539
Cfr13I	GGNCC	2 cut(s)	19, 500
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	6 cut(s)	23, 35, 123, 327, 383, 451
CviJI	RGCY	8 cut(s)	20, 95, 253, 287, 317, 447, 517, 532
CviKI_1	RGCY	8 cut(s)	20, 95, 253, 287, 317, 447, 517, 532
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	2 cut(s)	337, 429
DpnI	GATC	2 cut(s)	244, 369
DpnII	GATC	2 cut(s)	242, 367
Eco130I	CCWWGG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	500
Eco72I	CACGTG	1 cut(s)	53
Eco81I	CCTNAGG	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	6 cut(s)	26, 38, 126, 330, 386, 454
FatI	CATG	6 cut(s)	22, 34, 122, 326, 382, 450
Fnu4HI	GCNGC	4 cut(s)	225, 263, 515, 518
Fsp4HI	GCNGC	4 cut(s)	225, 263, 515, 518
GlaI	GCGC	3 cut(s)	459, 461, 538
GluI	GCNGC	4 cut(s)	225, 263, 515, 518
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	20, 253
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	3 cut(s)	460, 462, 539
Hin1II	CATG	6 cut(s)	26, 38, 126, 330, 386, 454
Hin6I	GCGC	3 cut(s)	458, 460, 537
HinP1I	GCGC	3 cut(s)	458, 460, 537
HpaII	CCGG	1 cut(s)	495
Hpy166II	GTNNAC	2 cut(s)	145, 500
Hpy188III	TCNNGA	5 cut(s)	246, 293, 339, 371, 527
Hpy8I	GTNNAC	2 cut(s)	145, 500
HpyAV	CCTTC	5 cut(s)	81, 159, 243, 277, 368
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	150, 326, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 323, 468
HpyF3I	CTNAG	2 cut(s)	337, 429
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	6 cut(s)	26, 38, 126, 330, 386, 454
HspAI	GCGC	3 cut(s)	458, 460, 537
KpnI	GGTACC	1 cut(s)	428
Kzo9I	GATC	2 cut(s)	242, 367
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	211, 249, 504
LweI	GCATC	2 cut(s)	128, 334
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	244, 369
MboI	GATC	2 cut(s)	242, 367
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	3 cut(s)	264, 283, 346
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	2 cut(s)	460, 537
MwoI	GCNNNNNNNGC	3 cut(s)	259, 323, 468
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	242, 367
NlaIII	CATG	6 cut(s)	26, 38, 126, 330, 386, 454
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	2 cut(s)	38, 330
PaeI	GCATGC	1 cut(s)	330
PauI	GCGCGC	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	253
PflFI	GACNNNGTC	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	226, 264, 516, 519
PmaCI	CACGTG	1 cut(s)	53
PmlI	CACGTG	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	228
PspCI	CACGTG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	2 cut(s)	19, 500
PsyI	GACNNNGTC	1 cut(s)	217
PteI	GCGCGC	1 cut(s)	458
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SatI	GCNGC	4 cut(s)	225, 263, 515, 518
Sau3AI	GATC	2 cut(s)	242, 367
Sau96I	GGNCC	2 cut(s)	19, 500
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	5 cut(s)	55, 160, 319, 379, 430
SfaNI	GCATC	2 cut(s)	128, 334
SinI	GGWCC	1 cut(s)	500
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	1 cut(s)	27
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	372
TasI	AATT	1 cut(s)	27
TauI	GCSGC	1 cut(s)	517
TscAI	CASTG	3 cut(s)	152, 284, 328
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	3 cut(s)	224, 262, 517
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	63, 94
TspRI	CASTG	3 cut(s)	152, 284, 328
Tth111I	GACNNNGTC	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	500
XceI	RCATGY	2 cut(s)	38, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.