Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009543

Physical Location & Seq

Genomic Coordinates Forward (+)

5191013 .. 5193887

Gene Structure 2875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG068700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTTTTGCTAATTTTATCGTGTTTAATGGATGAGTTGTGTTTGTTCTTTCAGTTTGTGCTCCTTGGCGCGGTTCCATTCCCCAAAGATGTTCCCCAGCTGAAGCGACTTGGTGTTGGCGGTGTTATCACGCTCAACGAATCTTATGAAACTTTGGTTCCTTCCTCCCTGTATCATGCCCATGGAATTGAGCATGTAGTAATCCCCACACGTGATTATCTCTTTGCACCTTCATTTGAAGATATCAGCAGGGCTGTGGAGTTCATTCACAAGAACGCATCATGTGGTAGAACTACTTATGTTCACTGCAAAGCAGGTCGGGGAAGGAGCACTACTATTGTGCTTTGCTATTTGGTGGAATACAAGAATATGACCCCGTCTGCTGCCCTGGAGTATGTGCGATCCAGAAGGCCTCGTGTGCTGCTTGCCCCCTCACAGTGGAAGGCTGTTCAAGAATACAGCAGATGTTGTAGAGCTACCACTGCATGCTCTCCCTCAGGAGATGCAGTTCTTATTACAAAAGATGATCTCGAAGGTTATCATGGCAGTTATGACAATACTGCTCGTAAGCAGTTGGCAATGGTACCTAAGATTGTGAAATCCAGCCCCATGATAGCGCGCTTGTCCTGCCTTTTTGCATCCTTGAAAGTTTCCGGTGGACCAGTCACAAGGCGGCTGCCAGTTCCAGAGCCACGCGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008962 GO:0009058 GO:0009987 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019866 GO:0023051 GO:0023057 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0032592 GO:0032879 GO:0032880 GO:0034593 GO:0034595 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046676 GO:0046883 GO:0046888 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051223 GO:0051224 GO:0052866 GO:0060341 GO:0061178 GO:0061179 GO:0065007 GO:0065008 GO:0070201 GO:0071704 GO:0090087 GO:0090276 GO:0090278 GO:0090407 GO:0098573 GO:0106019 GO:1901576 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

234

Amino Acids

25.96

Weight (kDa)

9.11

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	29 - 130	1.9e-13	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	32 - 155	7.9e-21	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	32 - 120	6.4e-12	Polymorphic toxin system, DSP-PTPase phosphatase
PTP-NADK	PF22741	55 - 120	1.5e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56610 AT5G56610
fragaria_vesca	FvH4_1g06520 FvH4_1g06520 FvH4_1g06520
malus_domestica	MD02G1068600.v1.1 MD15G1200100.v1.1
prunus_persica	Prupe.7G217100_v2.0.a1 Prupe.7G217100_v2.0.a1
pyrus_communis	pycom02g05430 pycom15g17760
rosa_chinensis	RchiOBHm_Chr2g0092271
rosa_laevigata	RLG00000016292
rosa_multiflora	Rmu_sc0003289.1_g000030
rosa_roxburghii	Rroxscaffold_2G00149310
rosa_rugosa	Rorug02G0024200 Rorug02G0024300
rosa_samantha	Rh2AG070200 Rh2BG069700 Rh2CG070900 Rh2DG068700
rosa_wichuraiana	Rw2G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
Acc65I	GGTACC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	583
AccII	CGCG	3 cut(s)	71, 619, 696
AciI	CCGC	3 cut(s)	71, 120, 673
AclWI	GGATC	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	70, 438
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	239, 452, 646
AjnI	CCWGG	1 cut(s)	387
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	2 cut(s)	100, 476
AluI	AGCT	2 cut(s)	100, 476
Alw21I	GWGCWC	2 cut(s)	63, 332
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	3 cut(s)	383, 421, 676
Asp718I	GGTACC	1 cut(s)	583
AspLEI	GCGC	4 cut(s)	71, 619, 621, 698
AspS9I	GGNCC	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	659
AxyI	CCTNAGG	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	583
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	1 cut(s)	414
BbrPI	CACGTG	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	63, 332
BbvI	GCAGC	3 cut(s)	370, 408, 663
BciT130I	CCWGG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	384, 422, 674, 677
BlsI	GCNGC	4 cut(s)	385, 423, 675, 678
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	3 cut(s)	75, 159, 585
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	3 cut(s)	287, 493, 647
BpmI	CTGGAG	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	64, 181, 387
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 438
Bse1I	ACTGG	2 cut(s)	662, 680
Bse21I	CCTNAGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	3 cut(s)	64, 181, 387
BseGI	GGATG	2 cut(s)	37, 638
BseLI	CCNNNNNNNGG	2 cut(s)	70, 438
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	662, 680
BsePI	GCGCGC	1 cut(s)	617
BseXI	GCAGC	3 cut(s)	370, 408, 663
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	3 cut(s)	71, 619, 696
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	63, 332
BsiSI	CCGG	1 cut(s)	654
BslI	CCNNNNNNNGG	2 cut(s)	70, 438
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	2 cut(s)	63, 332
Bsp143I	GATC	2 cut(s)	401, 526
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	3 cut(s)	71, 120, 673
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	509
BspFNI	CGCG	3 cut(s)	71, 619, 696
BspLI	GGNNCC	3 cut(s)	75, 159, 585
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	662, 680
BssECI	CCNNGG	3 cut(s)	64, 181, 387
BssHII	GCGCGC	1 cut(s)	617
BssMI	GATC	2 cut(s)	401, 526
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	64, 181
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	426, 487, 619, 700
BstDEI	CTNAG	2 cut(s)	496, 588
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	37, 638
BstFNI	CGCG	3 cut(s)	71, 619, 696
BstHHI	GCGC	4 cut(s)	71, 619, 621, 698
BstKTI	GATC	2 cut(s)	404, 529
BstMBI	GATC	2 cut(s)	401, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	418, 482, 627
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	2 cut(s)	197, 489
BstSCI	CCNGG	1 cut(s)	387
BstUI	CGCG	3 cut(s)	71, 619, 696
BstV1I	GCAGC	3 cut(s)	370, 408, 663
Bsu36I	CCTNAGG	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	37, 638
BtsI	GCAGTG	2 cut(s)	304, 480
BtsIMutI	CAGTG	3 cut(s)	304, 443, 480
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	4 cut(s)	426, 487, 619, 700
CfoI	GCGC	4 cut(s)	71, 619, 621, 698
Cfr13I	GGNCC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	7 cut(s)	176, 182, 194, 282, 486, 542, 610
CviJI	RGCY	8 cut(s)	100, 254, 412, 446, 476, 606, 676, 691
CviKI_1	RGCY	8 cut(s)	100, 254, 412, 446, 476, 606, 676, 691
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	2 cut(s)	496, 588
DpnI	GATC	2 cut(s)	403, 528
DpnII	GATC	2 cut(s)	401, 526
Eco130I	CCWWGG	2 cut(s)	64, 181
Eco147I	AGGCCT	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	387
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	64, 181
ErhI	CCWWGG	2 cut(s)	64, 181
FaeI	CATG	7 cut(s)	179, 185, 197, 285, 489, 545, 613
FatI	CATG	7 cut(s)	175, 181, 193, 281, 485, 541, 609
Fnu4HI	GCNGC	4 cut(s)	384, 422, 674, 677
FokI	GGATG	2 cut(s)	44, 625
Fsp4HI	GCNGC	4 cut(s)	384, 422, 674, 677
GlaI	GCGC	4 cut(s)	70, 618, 620, 697
GluI	GCNGC	4 cut(s)	384, 422, 674, 677
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	654
HhaI	GCGC	4 cut(s)	71, 619, 621, 698
Hin1II	CATG	7 cut(s)	179, 185, 197, 285, 489, 545, 613
Hin6I	GCGC	4 cut(s)	69, 617, 619, 696
HinP1I	GCGC	4 cut(s)	69, 617, 619, 696
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	654
Hpy166II	GTNNAC	2 cut(s)	304, 659
Hpy188III	TCNNGA	5 cut(s)	405, 452, 498, 530, 686
Hpy8I	GTNNAC	2 cut(s)	304, 659
HpyAV	CCTTC	6 cut(s)	171, 240, 318, 402, 436, 527
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	227, 309, 485, 506, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	418, 482, 627
HpyF3I	CTNAG	2 cut(s)	496, 588
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	7 cut(s)	179, 185, 197, 285, 489, 545, 613
HspAI	GCGC	4 cut(s)	69, 617, 619, 696
KpnI	GGTACC	1 cut(s)	587
Kzo9I	GATC	2 cut(s)	401, 526
LmnI	GCTCC	2 cut(s)	66, 327
Lsp1109I	GCAGC	3 cut(s)	370, 408, 663
LweI	GCATC	3 cut(s)	287, 493, 647
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	403, 528
MboI	GATC	2 cut(s)	401, 526
MboII	GAAGA	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	63, 332
MluCI	AATT	2 cut(s)	12, 186
MnlI	CCTC	4 cut(s)	175, 423, 442, 505
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	3 cut(s)	71, 619, 696
MwoI	GCNNNNNNNGC	3 cut(s)	418, 482, 627
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	401, 526
NlaIII	CATG	7 cut(s)	179, 185, 197, 285, 489, 545, 613
NlaIV	GGNNCC	3 cut(s)	75, 159, 585
NmuCI	GTSAC	1 cut(s)	664
NspI	RCATGY	2 cut(s)	197, 489
PaeI	GCATGC	1 cut(s)	489
PauI	GCGCGC	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	385, 423, 675, 678
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	387
PspCI	CACGTG	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	75, 159, 585
PspPI	GGNCC	1 cut(s)	659
PsyI	GACNNNGTC	1 cut(s)	376
PteI	GCGCGC	1 cut(s)	617
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	4 cut(s)	384, 422, 674, 677
Sau3AI	GATC	2 cut(s)	401, 526
Sau96I	GGNCC	1 cut(s)	659
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	63, 332
SetI	ASST	7 cut(s)	102, 214, 232, 319, 478, 538, 589
SfaNI	GCATC	3 cut(s)	287, 493, 647
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	2 cut(s)	12, 186
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	3 cut(s)	71, 120, 673
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	2 cut(s)	64, 181
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	531
TasI	AATT	2 cut(s)	12, 186
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	3 cut(s)	311, 443, 487
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	383, 421, 676
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	3 cut(s)	162, 222, 253
TspRI	CASTG	3 cut(s)	311, 443, 487
Tth111I	GACNNNGTC	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	659
XceI	RCATGY	2 cut(s)	197, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.