Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014050

Physical Location & Seq

Genomic Coordinates Reverse (-)

22961229 .. 22962713

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCACCGGCCGGAGAACTCCGACATCAATCTCCATCAAAGGAGAAACTATCTTCCGTTACCCAATCCGATGAAGCAGAAGCAGCGTCAGCAGCGATATCTGCGGCAGCTGCAGATGCGGAAGCTGCCGGATTATGGACACAGATCAAGGCGGAAGCTCGCCGTGATGCTGAGGCGGAGCCAGCTTTAGCTAGCTATCTATATTCGACGATTCTTTCTCATTCGTCTCTTGAACGATCTATCTCGTTTCATCTAGGAAACAAGCTTTGTTCCTCAACGCTTTTATCCACACTTTTATACGATCTGTTCTTAAACACTTTTTCCTCCGATCCTTCTCTTCGTAACGCCACCGTCGCAGATCTACGCGCTGCTCGTGTTCGTGATCCTGCTTGTATCTCGTTCTCTCATTGTCTCCTCAATTACAAAGGCTTCTTAGCTATTCAGGCGCATCGTGTATCACACAAGCTATGGACACAATCACGGAAGCCATTAGCATTAGCTCTACACTCAAGAATCTCCGATGTATTCGCTGTTGATATCCATCCAGCAGCGAAGATCGGAAAAGGGATACTTCTAGACCACGCAACCGGAGTTGTAGTCGGAGAAACAGCGGTGATTGGGAACAATGTTTCAATCCTTCACCATGTGACACTAGGTGGAACAGGTAAAGCTTGTGGAGATAGACATCCGAAGATCGGTGACGGTTGTTTGATTGGAGCTGGAGCGACTATTCTTGGAAATGTGAAGATTGGTGCAGGTGCTAAAGTAGGAGCTGGTTCTGTTGTGCTGATTGACGTGCCTTGTCGAGGTACTGCGGTTGGGAATCCGGCGAGACTTGTCGGAGGGAAAGAGAAGCCAACGATTCATGATGAGGAATGTCCTGGAGAATCGATGGATCATACTTCATTCATCTCGGAATGGTCAGATTACATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

312

Amino Acids

32.77

Weight (kDa)

6.7

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	45 - 149	5.7e-35	Serine acetyltransferase, N-terminal
Hexapep	PF00132	229 - 262	9.2e-11	Bacterial transferase hexapeptide (six repeats)
Hexapep_2	PF14602	231 - 262	9.7e-06	Hexapeptide repeat of succinyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56760
fragaria_vesca	FvH4_1g07140
malus_domestica	MD02G1075800.v1.1 MD02G1238300.v1.1
prunus_persica	Prupe.7G212700_v2.0.a1
pyrus_communis	pycom02g20370 pycom02g21490
rosa_chinensis	RchiOBHm_Chr2g0093021
rosa_laevigata	RLG00000016360
rosa_multiflora	Rmu_sc0000965.1_g000024 Rmu_sc0007577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148610
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077300 Rh2BG078700 Rh2CG080900
rosa_wichuraiana	Rw2G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	746
Acc36I	ACCTGC	1 cut(s)	746
AccII	CGCG	1 cut(s)	366
AciI	CCGC	6 cut(s)	104, 119, 152, 176, 611, 815
AclWI	GGATC	3 cut(s)	323, 377, 903
AcoI	YGGCCR	1 cut(s)	9
AdeI	CACNNNGTG	2 cut(s)	646, 656
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	4 cut(s)	11, 135, 695, 806
AgsI	TTSAA	2 cut(s)	233, 633
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	880
Alw26I	GTCTC	3 cut(s)	231, 416, 826
AlwI	GGATC	3 cut(s)	323, 377, 903
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	7 cut(s)	83, 92, 107, 110, 125, 368, 548
AspLEI	GCGC	2 cut(s)	368, 448
AsuHPI	GGTGA	3 cut(s)	625, 632, 710
AsuNHI	GCTAGC	1 cut(s)	191
BaeI	ACNNNNGTAYC	2 cut(s)	801, 834
BauI	CACGAG	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	7 cut(s)	95, 97, 104, 112, 119, 355, 560
BccI	CCATC	3 cut(s)	43, 549, 886
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	882
BciVI	GTATCC	1 cut(s)	561
BcoDI	GTCTC	3 cut(s)	231, 416, 826
BfaI	CTAG	4 cut(s)	192, 254, 575, 653
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	561
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	8 cut(s)	84, 93, 105, 108, 111, 126, 369, 549
BlsI	GCNGC	8 cut(s)	85, 94, 106, 109, 112, 127, 370, 550
Bme1390I	CCNGG	1 cut(s)	882
BmgBI	CACGTC	1 cut(s)	796
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	3 cut(s)	106, 157, 457
BmtI	GCTAGC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	741, 903
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	493
Bsa29I	ATCGAT	1 cut(s)	890
BsaBI	GATNNNNATC	2 cut(s)	540, 684
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 135, 695, 806
Bse118I	RCCGGY	1 cut(s)	7
Bse8I	GATNNNNATC	2 cut(s)	540, 684
BseBI	CCWGG	1 cut(s)	882
BseCI	ATCGAT	1 cut(s)	890
BseGI	GGATG	2 cut(s)	541, 685
BseJI	GATNNNNATC	2 cut(s)	540, 684
BseLI	CCNNNNNNNGG	4 cut(s)	11, 135, 695, 806
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	404
BseX3I	CGGCCG	1 cut(s)	9
BseXI	GCAGC	7 cut(s)	95, 97, 104, 112, 119, 355, 560
BsgI	GTGCAG	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	890
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	5 cut(s)	8, 12, 129, 588, 827
BslI	CCNNNNNNNGG	4 cut(s)	11, 135, 695, 806
BsmAI	GTCTC	3 cut(s)	231, 416, 826
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
BspACI	CCGC	6 cut(s)	104, 119, 152, 176, 611, 815
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	890
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	746
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	323, 377, 903
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssMI	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	2 cut(s)	352, 704
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	160, 183, 193
BstDEI	CTNAG	2 cut(s)	171, 433
BstENI	CCTNNNNNAGG	1 cut(s)	804
BstF5I	GGATG	2 cut(s)	541, 685
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	368, 448
BstKTI	GATC	9 cut(s)	147, 239, 304, 331, 361, 385, 558, 696, 898
BstMAI	GTCTC	3 cut(s)	231, 416, 826
BstMBI	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
BstMCI	CGRYCG	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	882
BstSCI	CCNGG	1 cut(s)	880
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	7 cut(s)	95, 97, 104, 112, 119, 355, 560
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	890
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	890
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	2 cut(s)	541, 685
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	3 cut(s)	160, 183, 193
CciI	TCATGA	1 cut(s)	865
CfoI	GCGC	2 cut(s)	368, 448
Cfr10I	RCCGGY	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	890
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	810
CviAII	CATG	2 cut(s)	644, 866
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	2 cut(s)	171, 433
DpnI	GATC	9 cut(s)	146, 238, 303, 330, 360, 384, 557, 695, 897
DpnII	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
DraIII	CACNNNGTG	2 cut(s)	646, 656
EaeI	YGGCCR	1 cut(s)	9
EagI	CGGCCG	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	2 cut(s)	167, 191
EclXI	CGGCCG	1 cut(s)	9
Eco32I	GATATC	2 cut(s)	99, 538
Eco52I	CGGCCG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	804
EcoRII	CCWGG	1 cut(s)	880
EcoRV	GATATC	2 cut(s)	99, 538
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	2 cut(s)	647, 869
FaiI	YATR	9 cut(s)	136, 202, 298, 469, 645, 867, 900, 935, 937
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	2 cut(s)	643, 865
Fnu4HI	GCNGC	8 cut(s)	84, 93, 105, 108, 111, 126, 369, 549
FokI	GGATG	2 cut(s)	528, 672
Fsp4HI	GCNGC	8 cut(s)	84, 93, 105, 108, 111, 126, 369, 549
FspBI	CTAG	4 cut(s)	192, 254, 575, 653
GlaI	GCGC	2 cut(s)	367, 447
GluI	GCNGC	8 cut(s)	84, 93, 105, 108, 111, 126, 369, 549
GsuI	CTGGAG	2 cut(s)	741, 903
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	5 cut(s)	8, 12, 129, 588, 827
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	368, 448
Hin1II	CATG	2 cut(s)	647, 869
Hin6I	GCGC	2 cut(s)	366, 446
HinP1I	GCGC	2 cut(s)	366, 446
HindIII	AAGCTT	2 cut(s)	263, 669
HinfI	GANTC	5 cut(s)	211, 513, 823, 862, 887
HpaII	CCGG	5 cut(s)	8, 12, 129, 588, 827
HphI	GGTGA	3 cut(s)	625, 632, 710
Hpy188III	TCNNGA	5 cut(s)	230, 380, 510, 575, 866
Hpy99I	CGWCG	2 cut(s)	211, 356
HpyAV	CCTTC	2 cut(s)	342, 647
HpyCH4III	ACNGT	2 cut(s)	352, 704
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	2 cut(s)	113, 755
HpyF3I	CTNAG	2 cut(s)	171, 433
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	2 cut(s)	647, 869
HspAI	GCGC	2 cut(s)	366, 446
Kzo9I	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
LmnI	GCTCC	4 cut(s)	178, 716, 722, 770
Lsp1109I	GCAGC	7 cut(s)	95, 97, 104, 112, 119, 355, 560
LweI	GCATC	3 cut(s)	106, 157, 457
MaeI	CTAG	4 cut(s)	192, 254, 575, 653
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	4 cut(s)	58, 341, 646, 698
MalI	GATC	9 cut(s)	146, 238, 303, 330, 360, 384, 557, 695, 897
MboI	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
MboII	GAAGA	5 cut(s)	45, 329, 565, 703, 757
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	1 cut(s)	418
MmeI	TCCRAC	3 cut(s)	46, 580, 820
MnlI	CCTC	7 cut(s)	166, 283, 334, 425, 800, 836, 865
MseI	TTAA	1 cut(s)	311
MspA1I	CMGCKG	2 cut(s)	110, 611
MspI	CCGG	5 cut(s)	8, 12, 129, 588, 827
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	1 cut(s)	366
NdeII	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	647, 869
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	646, 698
PagI	TCATGA	1 cut(s)	865
PaqCI	CACCTGC	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	5 cut(s)	211, 513, 823, 862, 887
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	8 cut(s)	85, 94, 106, 109, 112, 127, 370, 550
Psp6I	CCWGG	1 cut(s)	880
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	8 cut(s)	84, 93, 105, 108, 111, 126, 369, 549
Sau3AI	GATC	9 cut(s)	144, 236, 301, 328, 358, 382, 555, 693, 895
ScrFI	CCNGG	1 cut(s)	882
SfaNI	GCATC	3 cut(s)	106, 157, 457
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	6 cut(s)	104, 119, 152, 176, 611, 815
SspMI	CTAG	4 cut(s)	192, 254, 575, 653
StyD4I	CCNGG	1 cut(s)	880
TaaI	ACNGT	2 cut(s)	352, 704
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	3 cut(s)	206, 805, 890
TasI	AATT	1 cut(s)	418
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	5 cut(s)	211, 513, 823, 862, 887
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	646, 698
TseI	GCWGC	7 cut(s)	83, 92, 107, 110, 125, 368, 548
Tsp45I	GTSAC	2 cut(s)	646, 698
TspDTI	ATGAA	5 cut(s)	87, 239, 854, 894, 898
TspGWI	ACGGA	2 cut(s)	46, 496
XagI	CCTNNNNNAGG	1 cut(s)	804
XbaI	TCTAGA	1 cut(s)	574
XspI	CTAG	4 cut(s)	192, 254, 575, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.