Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Forward (+)

2511608 .. 2515121

Gene Structure 3514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0031500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGAGCTGACCTCAAGATCTCTTTGATTTCGTCAGCGGCAAACGCTTTCAAGTCATGGGAAAGGCTTGATGTAGGTGGCATTATATCCCACTCTTTTGAATTGGAAGCCAAGACGAAAGGACTGTTTAGTGGTGCAACAGCTGTTATTACATTTCGCTTTCCCTCAAAGGCTGCTCTACAGAGGATTCAGCTAGGGAAAGCACGCTGCCTGTTTGATCAGAATGTGGAAGGACCAGTCACATATACAATTGTTATACTTTCGATGAGAATACTCCACTTGTTGACGATCCAGAGTACATGTCTGCATTGGGTGAAACAATATTCAAGGGACTGCAAAGTGGAGATAAGGATGGGGTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009108 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015228 GO:0015291 GO:0015297 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015880 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051186 GO:0051188 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

9.72

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAP_beta	PF05753	16 - 60	2.9e-08	Translocon-associated protein beta (TRAPB)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	283
AfaI	GTAC	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	52, 101, 327
AluBI	AGCT	3 cut(s)	8, 143, 193
AluI	AGCT	3 cut(s)	8, 143, 193
AlwI	GGATC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	173, 207
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	160, 194
BccI	CCATC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	217
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	3 cut(s)	39, 174, 208
BlsI	GCNGC	3 cut(s)	40, 175, 209
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BplI	GAGNNNNNCTC	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	160, 194
BslFI	GGGAC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	18, 217, 288
BspACI	CCGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	236
BssMI	GATC	3 cut(s)	18, 217, 288
Bst4CI	ACNGT	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	3 cut(s)	21, 220, 291
BstMBI	GATC	3 cut(s)	18, 217, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	160, 194
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	57, 300
CviJI	RGCY	7 cut(s)	8, 67, 110, 143, 173, 193, 363
CviKI_1	RGCY	7 cut(s)	8, 67, 110, 143, 173, 193, 363
CviQI	GTAC	1 cut(s)	297
DpnI	GATC	3 cut(s)	20, 219, 290
DpnII	GATC	3 cut(s)	18, 217, 288
Eco47I	GGWCC	1 cut(s)	233
FaeI	CATG	2 cut(s)	60, 303
FaiI	YATR	6 cut(s)	58, 86, 244, 246, 257, 301
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	2 cut(s)	56, 299
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	39, 174, 208
Fsp4HI	GCNGC	3 cut(s)	39, 174, 208
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	39, 174, 208
Hin1II	CATG	2 cut(s)	60, 303
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	16, 292
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	137, 307, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	60, 303
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	18, 217, 288
LpnPI	CCDG	4 cut(s)	224, 249, 305, 345
Lsp1109I	GCAGC	2 cut(s)	160, 194
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	20, 219, 290
MboI	GATC	3 cut(s)	18, 217, 288
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	2 cut(s)	101, 249
MnlI	CCTC	3 cut(s)	23, 175, 177
MspA1I	CMGCKG	2 cut(s)	38, 143
MunI	CAATTG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	3 cut(s)	18, 217, 288
NlaIII	CATG	2 cut(s)	60, 303
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	303
PciI	ACATGT	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	40, 175, 209
PscI	ACATGT	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SatI	GCNGC	3 cut(s)	39, 174, 208
Sau3AI	GATC	3 cut(s)	18, 217, 288
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	5 cut(s)	10, 15, 79, 145, 195
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	101, 249
SsiI	CCGC	1 cut(s)	38
SspI	AATATT	1 cut(s)	323
SspMI	CTAG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	263
TasI	AATT	2 cut(s)	101, 249
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	173, 207
Tsp45I	GTSAC	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	233
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.