pycom02g06030

DNA binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
4052879 .. 4054799
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06030.3

Sequence Viewer

Length: 1131 bp
ATGGTAGCCGGCAATTCGACCGTTGCCGTGTCAAGGTTGAAGAGGGAAGATTGCAAGCGCACCAAACACGACTCTCACTTCTCCAATTGGAAGATTCTGGTTGGCCCTTCTGATTGGGAAGACTATTCGCTGGGCAAAGAAGGAGCTGAAAGATACAGAGTTCATAACCTCCCCAAAAAGGAGAGTCCGGGTGTCTATGAACTCGGGATTTCCGTTTCGCGTACCGGTCTAGGCCGTGAGATTGGGAAGCTTGACCCGGACTACATAGTCCCGGTGTACCTTGGACAAGCTGATAATGTGAGGACACGGCTTCAGCAATATGGTCGTTCAGGTGCGCATTTGGGGAATGGCAGCTCAACTGGTCATCCTACTGACTCTGTGCAAAAGGAAAAGGGGCCCGGATTGTTTGTAGAGATACTGTCAAGAGGCTACCCCATTGCGTATAGATGGGCTCCTATGGAAAATAAAAGCGATGCACTGAAAACAGAAACTCAGCTGCTTGATACATTTGACTATGCATGGAATACAACCATTAATGGAGCAAGGCGCCCTGATGATGTCCTTCGAAAACTCAAGAAGATTTCTTCAAGCACTACGCGATTTGCTAACATTGCCGAGAAGCTTCTGCCTTTCAGTCAGAAGAAAGTGGGCATCAGAATTGAATCAAGCAAACCAATTTCAACGGGTGACAAATTTGGTGCTTATGATGACAGGGAGATCCACAACTCCCCTTTTCGGGTCTTCAAGCTCGGCAGATCACAGCCTAGGTTGGTTTCATATAGAAGCATTACTAAGGAGAATACTAGTATAATTTGTGGGGTGGTTGTAGGAGATGGTTCTGTTTGCAGAACGGCACCAGTTCCAGGAAGAAAGAGGTGTGCTGAACACAAAGGGATGAGGATTAATGGGTCAACCAGAGTTGGGATATCAATCAGCAATGCCGACTCACAGTGCCGCGTTATTAGCAACCATGATCCAGTAGAGCTTCCGCCAGTTGAAGTTCCTGCTAGTGAGATTTTCGTTCCAATTTGTGGATTCATCTTGGCTGATGGATCGCCTTGTGGAAGGCATCCGATCCGAGGGCGGAAAAGGTGTGATGAGCATAAAGGGAGAAGAATTCAGAAACCCTAA

Protein Analysis

377

Amino Acids

41.72

Weight (kDa)

9.68

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
Acc16I TGCGCA 1 cut(s) 336
AccB1I GGYRCC 2 cut(s) 546, 853
AccB7I CCANNNNNTGG 1 cut(s) 1031
AccII CGCG 3 cut(s) 220, 598, 957
AciI CCGC 3 cut(s) 955, 989, 1084
AclWI GGATC 4 cut(s) 712, 968, 1060, 1069
AcsI RAATTY 2 cut(s) 692, 1116
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 547
AfaI GTAC 2 cut(s) 223, 278
AfiI CCNNNNNNNGG 8 cut(s) 33, 178, 735, 736, 863, 921, 1031, 1079
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 6 cut(s) 40, 588, 662, 681, 745, 998
AhlI ACTAGT 1 cut(s) 803
AjnI CCWGG 1 cut(s) 862
AluBI AGCT 8 cut(s) 146, 250, 290, 354, 496, 622, 748, 985
AluI AGCT 8 cut(s) 146, 250, 290, 354, 496, 622, 748, 985
AlwI GGATC 4 cut(s) 712, 968, 1060, 1069
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 3 cut(s) 103, 232, 395
ApaI GGGCCC 1 cut(s) 399
ApeKI GCWGC 2 cut(s) 351, 496
ApoI RAATTY 2 cut(s) 692, 1116
AseI ATTAAT 2 cut(s) 534, 903
AsiGI ACCGGT 1 cut(s) 224
AspA2I CCTAGG 1 cut(s) 764
AspLEI GCGC 3 cut(s) 60, 337, 549
AspS9I GGNCC 3 cut(s) 104, 395, 396
AsuC2I CCSGG 4 cut(s) 189, 257, 272, 399
AsuHPI GGTGA 1 cut(s) 698
AsuII TTCGAA 1 cut(s) 565
AvaI CYCGRG 1 cut(s) 203
AvrII CCTAGG 1 cut(s) 764
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 2 cut(s) 546, 853
BanII GRGCYC 2 cut(s) 399, 454
BbsI GAAGAC 2 cut(s) 126, 733
BbvI GCAGC 2 cut(s) 363, 483
BccI CCATC 3 cut(s) 441, 827, 1043
BceAI ACGGC 4 cut(s) 11, 219, 323, 867
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 1 cut(s) 864
BcnI CCSGG 4 cut(s) 189, 257, 272, 399
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 4 cut(s) 230, 765, 804, 1008
BfoI RGCGCY 1 cut(s) 550
BisI GCNGC 3 cut(s) 352, 497, 955
BlnI CCTAGG 1 cut(s) 764
BlsI GCNGC 3 cut(s) 353, 498, 956
Bme1390I CCNGG 5 cut(s) 189, 257, 272, 399, 864
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 3 cut(s) 104, 395, 396
BmiI GGNNCC 5 cut(s) 396, 397, 453, 548, 855
BmrFI CCNGG 5 cut(s) 189, 257, 272, 399, 864
BmsI GCATC 3 cut(s) 463, 660, 1078
BpiI GAAGAC 2 cut(s) 126, 733
Bpu14I TTCGAA 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 4 cut(s) 189, 257, 272, 399
BsaBI GATNNNNATC 1 cut(s) 929
BsaHI GRCGYC 1 cut(s) 547
BsaJI CCNNGG 3 cut(s) 280, 764, 1078
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 8 cut(s) 33, 178, 735, 736, 863, 921, 1031, 1079
Bse118I RCCGGY 2 cut(s) 8, 224
Bse1I ACTGG 4 cut(s) 364, 857, 977, 992
Bse3DI GCAATG 3 cut(s) 435, 609, 943
Bse8I GATNNNNATC 1 cut(s) 929
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 3 cut(s) 280, 764, 1078
BseGI GGATG 3 cut(s) 364, 900, 1069
BseJI GATNNNNATC 1 cut(s) 929
BseLI CCNNNNNNNGG 8 cut(s) 33, 178, 735, 736, 863, 921, 1031, 1079
BseMI GCAATG 3 cut(s) 435, 609, 943
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 4 cut(s) 364, 857, 977, 992
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 2 cut(s) 363, 483
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 3 cut(s) 220, 598, 957
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 105, 234, 397
BshNI GGYRCC 2 cut(s) 546, 853
BshTI ACCGGT 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 6 cut(s) 9, 188, 225, 257, 272, 399
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 8 cut(s) 33, 178, 735, 736, 863, 921, 1031, 1079
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 105, 234, 397
BsoBI CYCGRG 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 565
Bsp120I GGGCCC 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 399, 454
Bsp143I GATC 5 cut(s) 717, 755, 973, 1052, 1074
BspACI CCGC 3 cut(s) 955, 989, 1084
BspANI GGCC 3 cut(s) 105, 234, 397
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 3 cut(s) 220, 598, 957
BspLI GGNNCC 5 cut(s) 396, 397, 453, 548, 855
BspPI GGATC 4 cut(s) 712, 968, 1060, 1069
BspT104I TTCGAA 1 cut(s) 565
BspT107I GGYRCC 2 cut(s) 546, 853
BsrDI GCAATG 3 cut(s) 435, 609, 943
BsrFI RCCGGY 2 cut(s) 8, 224
BsrI ACTGG 4 cut(s) 364, 857, 977, 992
BssAI RCCGGY 2 cut(s) 8, 224
BssECI CCNNGG 3 cut(s) 280, 764, 1078
BssMI GATC 5 cut(s) 717, 755, 973, 1052, 1074
BssNI GRCGYC 1 cut(s) 547
BssT1I CCWWGG 2 cut(s) 280, 764
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 3 cut(s) 22, 420, 951
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 547
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 10, 56
BstDEI CTNAG 2 cut(s) 492, 792
BstF5I GGATG 3 cut(s) 364, 900, 1069
BstFNI CGCG 3 cut(s) 220, 598, 957
BstH2I RGCGCY 1 cut(s) 550
BstHHI GCGC 3 cut(s) 60, 337, 549
BstKTI GATC 5 cut(s) 720, 758, 976, 1055, 1077
BstMBI GATC 5 cut(s) 717, 755, 973, 1052, 1074
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 611, 963
BstNI CCWGG 1 cut(s) 864
BstSCI CCNGG 5 cut(s) 187, 255, 270, 397, 862
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 3 cut(s) 220, 598, 957
BstV1I GCAGC 2 cut(s) 363, 483
BstV2I GAAGAC 2 cut(s) 126, 733
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
BsuRI GGCC 3 cut(s) 105, 234, 397
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 3 cut(s) 364, 900, 1069
BtsIMutI CAGTG 2 cut(s) 476, 956
Cac8I GCNNGC 2 cut(s) 10, 56
CfoI GCGC 3 cut(s) 60, 337, 549
Cfr10I RCCGGY 2 cut(s) 8, 224
Cfr13I GGNCC 3 cut(s) 104, 395, 396
Csp6I GTAC 2 cut(s) 222, 277
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 2 cut(s) 519, 971
CviQI GTAC 2 cut(s) 222, 277
DdeI CTNAG 2 cut(s) 492, 792
DinI GGCGCC 1 cut(s) 548
DpnI GATC 5 cut(s) 719, 757, 975, 1054, 1076
DpnII GATC 5 cut(s) 717, 755, 973, 1052, 1074
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 2 cut(s) 978, 1099
Eco130I CCWWGG 2 cut(s) 280, 764
Eco24I GRGCYC 2 cut(s) 399, 454
Eco32I GATATC 1 cut(s) 927
Eco57I CTGAAG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 1116
EcoRII CCWGG 1 cut(s) 862
EcoRV GATATC 1 cut(s) 927
EcoT14I CCWWGG 2 cut(s) 280, 764
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 2 cut(s) 399, 454
EgeI GGCGCC 1 cut(s) 548
EheI GGCGCC 1 cut(s) 548
ErhI CCWWGG 2 cut(s) 280, 764
FaeI CATG 2 cut(s) 522, 974
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 518, 970
Fnu4HI GCNGC 3 cut(s) 352, 497, 955
FokI GGATG 3 cut(s) 351, 907, 1056
FriOI GRGCYC 2 cut(s) 399, 454
Fsp4HI GCNGC 3 cut(s) 352, 497, 955
FspAI RTGCGCAY 1 cut(s) 336
FspBI CTAG 4 cut(s) 230, 765, 804, 1008
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 3 cut(s) 59, 336, 548
GluI GCNGC 3 cut(s) 352, 497, 955
GsaI CCCAGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 550
HaeIII GGCC 3 cut(s) 105, 234, 397
HapII CCGG 6 cut(s) 9, 188, 225, 257, 272, 399
HhaI GCGC 3 cut(s) 60, 337, 549
Hin1I GRCGYC 1 cut(s) 547
Hin1II CATG 2 cut(s) 522, 974
Hin6I GCGC 3 cut(s) 58, 335, 547
HinP1I GCGC 3 cut(s) 58, 335, 547
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HindIII AAGCTT 2 cut(s) 248, 620
HinfI GANTC 7 cut(s) 71, 94, 184, 374, 662, 944, 1035
HpaII CCGG 6 cut(s) 9, 188, 225, 257, 272, 399
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 2 cut(s) 277, 912
Hpy188I TCNGA 6 cut(s) 112, 639, 656, 1074, 1079, 1122
Hpy188III TCNNGA 3 cut(s) 205, 423, 574
Hpy8I GTNNAC 2 cut(s) 277, 912
HpyAV CCTTC 4 cut(s) 117, 134, 572, 1059
HpyCH4III ACNGT 3 cut(s) 22, 420, 951
HpyCH4V TGCA 5 cut(s) 54, 382, 476, 518, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 963
HpyF3I CTNAG 2 cut(s) 492, 792
Hsp92I GRCGYC 1 cut(s) 547
Hsp92II CATG 2 cut(s) 522, 974
HspAI GCGC 3 cut(s) 58, 335, 547
KasI GGCGCC 1 cut(s) 546
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 5 cut(s) 717, 755, 973, 1052, 1074
LmnI GCTCC 3 cut(s) 143, 457, 539
Lsp1109I GCAGC 2 cut(s) 363, 483
LweI GCATC 3 cut(s) 463, 660, 1078
MaeI CTAG 4 cut(s) 230, 765, 804, 1008
MaeIII GTNAC 1 cut(s) 686
MalI GATC 5 cut(s) 719, 757, 975, 1054, 1076
MboI GATC 5 cut(s) 717, 755, 973, 1052, 1074
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 2 cut(s) 399, 454
MluCI AATT 8 cut(s) 13, 85, 657, 675, 692, 810, 1026, 1116
Mly113I GGCGCC 1 cut(s) 547
MlyI GAGTC 4 cut(s) 65, 193, 368, 938
MnlI CCTC 7 cut(s) 36, 179, 294, 419, 867, 891, 1073
Mph1103I ATGCAT 1 cut(s) 520
MroNI GCCGGC 1 cut(s) 8
MseI TTAA 2 cut(s) 534, 903
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 6 cut(s) 9, 188, 225, 257, 272, 399
MspR9I CCNGG 5 cut(s) 189, 257, 272, 399, 864
MunI CAATTG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 864
MvnI CGCG 3 cut(s) 220, 598, 957
MwoI GCNNNNNNNGC 2 cut(s) 611, 963
NaeI GCCGGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 547
NciI CCSGG 4 cut(s) 189, 257, 272, 399
NdeII GATC 5 cut(s) 717, 755, 973, 1052, 1074
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 522, 974
NlaIV GGNNCC 5 cut(s) 396, 397, 453, 548, 855
NmeAIII GCCGAG 2 cut(s) 640, 729
NmuCI GTSAC 1 cut(s) 686
NsbI TGCGCA 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 520
NspV TTCGAA 1 cut(s) 565
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 94, 662, 1035
PflMI CCANNNNNTGG 1 cut(s) 1031
PfoI TCCNGGA 1 cut(s) 862
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 3 cut(s) 353, 498, 956
PleI GAGTC 4 cut(s) 65, 192, 368, 938
PluTI GGCGCC 1 cut(s) 550
PpsI GAGTC 4 cut(s) 65, 192, 368, 938
PshBI ATTAAT 2 cut(s) 534, 903
Psp6I CCWGG 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 5 cut(s) 396, 397, 453, 548, 855
PspOMI GGGCCC 1 cut(s) 395
PspPI GGNCC 3 cut(s) 104, 395, 396
PsuI RGATCY 1 cut(s) 717
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 2 cut(s) 223, 278
RsaNI GTAC 2 cut(s) 222, 277
SaqAI TTAA 2 cut(s) 534, 903
SatI GCNGC 3 cut(s) 352, 497, 955
Sau3AI GATC 5 cut(s) 717, 755, 973, 1052, 1074
Sau96I GGNCC 3 cut(s) 104, 395, 396
SchI GAGTC 4 cut(s) 65, 193, 368, 938
ScrFI CCNGG 5 cut(s) 189, 257, 272, 399, 864
SduI GDGCHC 2 cut(s) 399, 454
SfaNI GCATC 3 cut(s) 463, 660, 1078
SfoI GGCGCC 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SpeI ACTAGT 1 cut(s) 803
Sse9I AATT 8 cut(s) 13, 85, 657, 675, 692, 810, 1026, 1116
SsiI CCGC 3 cut(s) 955, 989, 1084
SspDI GGCGCC 1 cut(s) 546
SspMI CTAG 4 cut(s) 230, 765, 804, 1008
StyD4I CCNGG 5 cut(s) 187, 255, 270, 397, 862
StyI CCWWGG 2 cut(s) 280, 764
TaaI ACNGT 3 cut(s) 22, 420, 951
TaqI TCGA 2 cut(s) 17, 565
TasI AATT 8 cut(s) 13, 85, 657, 675, 692, 810, 1026, 1116
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 3 cut(s) 94, 662, 1035
Tru1I TTAA 2 cut(s) 534, 903
Tru9I TTAA 2 cut(s) 534, 903
TscAI CASTG 2 cut(s) 483, 956
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 2 cut(s) 351, 496
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 4 cut(s) 152, 213, 765, 1027
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 2 cut(s) 483, 956
Van91I CCANNNNNTGG 1 cut(s) 1031
VspI ATTAAT 2 cut(s) 534, 903
XapI RAATTY 2 cut(s) 692, 1116
XmaJI CCTAGG 1 cut(s) 764
XspI CTAG 4 cut(s) 230, 765, 804, 1008
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.