FvH4_1g07150

DNA binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
3776632 .. 3780017
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07150.t1

Sequence Viewer

Length: 1482 bp
ATGCTGGCAAGAGGCTACACCATTGTCTATAGATGGGCTCCTATGAGAACCAAAAATGAGGCGCTGAGAACAGAAAGGAAGCTGCTTGACACATTTGATTATGCATGGAACAGAAATTCCAATGCGTCACGGCGCCGTGATGACGTTCTTCAGAAACTCAAGAAAATTTCCTCAAAATCAACCAGATTTACTGCTACTGTCCCAAGGCATTTACCTTTCAGACAGAAGCAAGTCAGTATTAGAATAAACTCCAGCAATCTGATTTCAACAGAGAAAAAGTTCAGTGACTATGCTGATAAGGAGAGCAGGAATCTCATACCCCAAGTTATCAAGTTTGGCAGATCACAGCCTAGGTTAGTTTTGGATGGAAGTGGGATTACTCAGGAAAATACTATAGTTTGTGGGGTGGCTATTGGTGATGGGCCCATATGTAGAAAGGCACCAGTTCAAGGAAGAAAGAGGTGTGCTGCACACAAAGGGATTAAGAATACTGGATCGACTACAGATAGCAACAGAGAGTGGGTTTCATTCGAAAGTGGTATTACTTGGGAGAACACTGAAATTTGTGGGGTGGCTGCAGGTGATGGGTCTACCTGCAGAAGGCCTCCAGTTCAAGGAAGAAAGAGGTGTGCTGAACACAAAGGGATGAGGAATACTGAATCGACTACAGCTAGCACCAGAGAGTTGGTTACATATAATAGTGGTGTTACTTTGGAGAACACTGAAATTTGTGGGGTGGCTGCAGGTGATGGGTCTATTTGTAGAGTGCCTCCAGTTCCAGGAAGAGTGAGGTGCGCCATGCACAAAGGGATGAGGAATACTGGATTGACTACTGCTAGCAACAGTGAGCTGGTTACATATAAAAGTGGCAATACTTTGGAGAACACTGAAATTTGTGGGTTGGCTGCAGGTGATGGGTCTACCTGTGGAATGCCTCCAGTTCCAGGAAGAGTGCGGTGTGCTATGCACAAAGGGATGAGAAATACTGAATCGTCTACAGCTAGCAACATAGAGTTCTTTCCATATATAAGTGGTAATACTCGGGAGAATACTGAAATTTGTGGGATGACTGCAGGTAACGGGTCTATTTGTAGAAGGCCTCCGGTTCCAGGAAGAGTGAGGTGTGCTATGCACAAAGGGATGAGAAATACTGAATCGTCTACAGCTAGCAACATAGAGTTCTTTTCATATATAAGTGGCAATACTCGGGAGAATACTGAAATTTGTGGGGTGACTGCTGGTAACGGGTCTATTTGTAGAAGGCCTCCGGTTCCAGGAAGAGTCAGGTGCGCCATGCACAAAGGGATGAGGATTACTGAATCGACTACAGCTAGCAACAGAGAGTTTGTTTCATATAGTAGTGGCAATACTTGGGATAACACTGATATTTGTGGGGTGACTGCAGGTAATGGGTCTATTTGTAGAAGGCCTCCAGTTCCAGGAAGAGTGAGGTGCGCCATGCATAAAGGGATGAGGAGGTAG

Protein Analysis

494

Amino Acids

53.94

Weight (kDa)

9.89

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIY_YIG_domain PF19239 2 - 50 1.6e-18 GIY-YIG domain-containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 569, 734, 899
Acc36I ACCTGC 6 cut(s) 569, 602, 734, 899, 1064, 1394
AccB1I GGYRCC 2 cut(s) 132, 439
AccI GTMKAC 4 cut(s) 590, 920, 995, 1160
AciI CCGC 1 cut(s) 955
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 7 cut(s) 115, 165, 561, 726, 891, 1056, 1221
AcuI CTGAAG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 133
AfiI CCNNNNNNNGG 8 cut(s) 449, 600, 614, 779, 944, 1109, 1274, 1439
AgsI TTSAA 3 cut(s) 267, 449, 614
AjnI CCWGG 5 cut(s) 778, 943, 1108, 1273, 1438
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 6 cut(s) 82, 671, 850, 1001, 1166, 1331
AluI AGCT 6 cut(s) 82, 671, 850, 1001, 1166, 1331
AlwI GGATC 1 cut(s) 502
Ama87I CYCGRG 2 cut(s) 1041, 1206
AoxI GGCC 5 cut(s) 422, 602, 1097, 1262, 1427
ApaI GGGCCC 1 cut(s) 426
ApeKI GCWGC 5 cut(s) 82, 467, 575, 740, 905
ApoI RAATTY 7 cut(s) 115, 165, 561, 726, 891, 1056, 1221
Asp700I GAANNNNTTC 1 cut(s) 278
AspA2I CCTAGG 1 cut(s) 350
AspLEI GCGC 5 cut(s) 64, 135, 797, 1292, 1457
AspS9I GGNCC 2 cut(s) 422, 423
AsuHPI GGTGA 6 cut(s) 428, 593, 758, 923, 1243, 1408
AsuII TTCGAA 1 cut(s) 531
AsuNHI GCTAGC 5 cut(s) 671, 836, 1001, 1166, 1331
AvaI CYCGRG 2 cut(s) 1041, 1206
AvrII CCTAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 426
BanI GGYRCC 2 cut(s) 132, 439
BanII GRGCYC 2 cut(s) 40, 426
BarI GAAGNNNNNNTAC 2 cut(s) 361, 393
BbvI GCAGC 5 cut(s) 69, 454, 562, 727, 892
BccI CCATC 6 cut(s) 27, 359, 413, 578, 743, 908
BceAI ACGGC 2 cut(s) 120, 146
BciT130I CCWGG 5 cut(s) 780, 945, 1110, 1275, 1440
BfaI CTAG 6 cut(s) 351, 672, 837, 1002, 1167, 1332
BfoI RGCGCY 2 cut(s) 65, 136
BfuAI ACCTGC 6 cut(s) 569, 602, 734, 899, 1064, 1394
BisI GCNGC 5 cut(s) 83, 468, 576, 741, 906
BlnI CCTAGG 1 cut(s) 350
BlsI GCNGC 5 cut(s) 84, 469, 577, 742, 907
Bme1390I CCNGG 5 cut(s) 780, 945, 1110, 1275, 1440
BmeT110I CYCGRG 2 cut(s) 1041, 1206
BmgT120I GGNCC 2 cut(s) 422, 423
BmiI GGNNCC 6 cut(s) 39, 134, 424, 441, 1107, 1272
BmrFI CCNGG 5 cut(s) 780, 945, 1110, 1275, 1440
BmtI GCTAGC 5 cut(s) 675, 840, 1005, 1170, 1335
BpmI CTGGAG 5 cut(s) 235, 591, 756, 921, 1416
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 203, 350
BsaWI WCCGGW 2 cut(s) 1102, 1267
Bsc4I CCNNNNNNNGG 8 cut(s) 449, 600, 614, 779, 944, 1109, 1274, 1439
Bse1I ACTGG 7 cut(s) 443, 496, 608, 773, 826, 938, 1433
BseBI CCWGG 5 cut(s) 780, 945, 1110, 1275, 1440
BseDI CCNNGG 2 cut(s) 203, 350
BseGI GGATG 8 cut(s) 370, 651, 816, 981, 1071, 1146, 1311, 1476
BseLI CCNNNNNNNGG 8 cut(s) 449, 600, 614, 779, 944, 1109, 1274, 1439
BseMII CTCAG 2 cut(s) 56, 395
BseNI ACTGG 7 cut(s) 443, 496, 608, 773, 826, 938, 1433
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 5 cut(s) 69, 454, 562, 727, 892
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 5 cut(s) 424, 604, 1099, 1264, 1429
BshNI GGYRCC 2 cut(s) 132, 439
BsiHKCI CYCGRG 2 cut(s) 1041, 1206
BsiSI CCGG 2 cut(s) 1103, 1268
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 8 cut(s) 449, 600, 614, 779, 944, 1109, 1274, 1439
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 5 cut(s) 424, 604, 1099, 1264, 1429
BsoBI CYCGRG 2 cut(s) 1041, 1206
Bsp119I TTCGAA 1 cut(s) 531
Bsp120I GGGCCC 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 40, 426
Bsp143I GATC 2 cut(s) 341, 494
BspACI CCGC 1 cut(s) 955
BspANI GGCC 5 cut(s) 424, 604, 1099, 1264, 1429
BspCNI CTCAG 2 cut(s) 57, 394
BspLI GGNNCC 6 cut(s) 39, 134, 424, 441, 1107, 1272
BspMAI CTGCAG 6 cut(s) 580, 599, 745, 910, 1075, 1405
BspMI ACCTGC 6 cut(s) 569, 602, 734, 899, 1064, 1394
BspOI GCTAGC 5 cut(s) 675, 840, 1005, 1170, 1335
BspPI GGATC 1 cut(s) 502
BspT104I TTCGAA 1 cut(s) 531
BspT107I GGYRCC 2 cut(s) 132, 439
BsrI ACTGG 7 cut(s) 443, 496, 608, 773, 826, 938, 1433
BssECI CCNNGG 2 cut(s) 203, 350
BssMI GATC 2 cut(s) 341, 494
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 2 cut(s) 203, 350
Bst2UI CCWGG 5 cut(s) 780, 945, 1110, 1275, 1440
Bst4CI ACNGT 2 cut(s) 199, 845
Bst6I CTCTTC 5 cut(s) 778, 943, 1108, 1273, 1438
BstACI GRCGYC 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 6 cut(s) 6, 673, 838, 1003, 1168, 1333
BstDEI CTNAG 2 cut(s) 65, 381
BstENI CCTNNNNNAGG 1 cut(s) 598
BstF5I GGATG 8 cut(s) 370, 651, 816, 981, 1071, 1146, 1311, 1476
BstH2I RGCGCY 2 cut(s) 65, 136
BstHHI GCGC 5 cut(s) 64, 135, 797, 1292, 1457
BstKTI GATC 2 cut(s) 344, 497
BstMBI GATC 2 cut(s) 341, 494
BstNI CCWGG 5 cut(s) 780, 945, 1110, 1275, 1440
BstSCI CCNGG 5 cut(s) 778, 943, 1108, 1273, 1438
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 5 cut(s) 69, 454, 562, 727, 892
BstXI CCANNNNNNTGG 1 cut(s) 685
BsuRI GGCC 5 cut(s) 424, 604, 1099, 1264, 1429
BtsCI GGATG 8 cut(s) 370, 651, 816, 981, 1071, 1146, 1311, 1476
BtsIMutI CAGTG 6 cut(s) 289, 555, 720, 850, 885, 1380
BveI ACCTGC 6 cut(s) 569, 602, 734, 899, 1064, 1394
Cac8I GCNNGC 6 cut(s) 6, 673, 838, 1003, 1168, 1333
CfoI GCGC 5 cut(s) 64, 135, 797, 1292, 1457
Cfr13I GGNCC 2 cut(s) 422, 423
CseI GACGC 1 cut(s) 114
CviAII CATG 4 cut(s) 105, 799, 1294, 1459
DdeI CTNAG 2 cut(s) 65, 381
DinI GGCGCC 1 cut(s) 134
DpnI GATC 2 cut(s) 343, 496
DpnII GATC 2 cut(s) 341, 494
Eam1104I CTCTTC 5 cut(s) 778, 943, 1108, 1273, 1438
EarI CTCTTC 5 cut(s) 778, 943, 1108, 1273, 1438
Eco130I CCWWGG 2 cut(s) 203, 350
Eco147I AGGCCT 4 cut(s) 604, 1099, 1264, 1429
Eco24I GRGCYC 2 cut(s) 40, 426
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 1041, 1206
EcoNI CCTNNNNNAGG 1 cut(s) 598
EcoRII CCWGG 5 cut(s) 778, 943, 1108, 1273, 1438
EcoT14I CCWWGG 2 cut(s) 203, 350
EcoT22I ATGCAT 2 cut(s) 106, 1464
EcoT38I GRGCYC 2 cut(s) 40, 426
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 203, 350
FaeI CATG 4 cut(s) 108, 802, 1297, 1462
FaqI GGGAC 1 cut(s) 185
FatI CATG 4 cut(s) 104, 798, 1293, 1458
FauNDI CATATG 1 cut(s) 428
FblI GTMKAC 4 cut(s) 590, 920, 995, 1160
Fnu4HI GCNGC 5 cut(s) 83, 468, 576, 741, 906
FokI GGATG 7 cut(s) 377, 658, 823, 988, 1078, 1153, 1318
FriOI GRGCYC 2 cut(s) 40, 426
Fsp4HI GCNGC 5 cut(s) 83, 468, 576, 741, 906
FspBI CTAG 6 cut(s) 351, 672, 837, 1002, 1167, 1332
GlaI GCGC 5 cut(s) 63, 134, 796, 1291, 1456
GluI GCNGC 5 cut(s) 83, 468, 576, 741, 906
GsuI CTGGAG 5 cut(s) 235, 591, 756, 921, 1416
HaeII RGCGCY 2 cut(s) 65, 136
HaeIII GGCC 5 cut(s) 424, 604, 1099, 1264, 1429
HapII CCGG 2 cut(s) 1103, 1268
HgaI GACGC 1 cut(s) 114
HhaI GCGC 5 cut(s) 64, 135, 797, 1292, 1457
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 4 cut(s) 108, 802, 1297, 1462
Hin6I GCGC 5 cut(s) 62, 133, 795, 1290, 1455
HinP1I GCGC 5 cut(s) 62, 133, 795, 1290, 1455
HinfI GANTC 6 cut(s) 310, 659, 989, 1154, 1281, 1319
HpaII CCGG 2 cut(s) 1103, 1268
HphI GGTGA 6 cut(s) 428, 593, 758, 923, 1243, 1408
Hpy166II GTNNAC 4 cut(s) 591, 921, 996, 1161
Hpy188I TCNGA 3 cut(s) 153, 221, 261
Hpy188III TCNNGA 4 cut(s) 160, 383, 1043, 1208
Hpy8I GTNNAC 4 cut(s) 591, 921, 996, 1161
HpyAV CCTTC 4 cut(s) 594, 1089, 1254, 1419
HpyCH4III ACNGT 2 cut(s) 199, 845
HpyCH4IV ACGT 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 65, 381
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 4 cut(s) 108, 802, 1297, 1462
HspAI GCGC 5 cut(s) 62, 133, 795, 1290, 1455
KasI GGCGCC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 341, 494
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 5 cut(s) 69, 454, 562, 727, 892
MaeI CTAG 6 cut(s) 351, 672, 837, 1002, 1167, 1332
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 9 cut(s) 126, 284, 688, 706, 853, 1076, 1231, 1241, 1396
MalI GATC 2 cut(s) 343, 496
MboI GATC 2 cut(s) 341, 494
MboII GAAGA 8 cut(s) 140, 465, 630, 795, 960, 1125, 1290, 1455
MhlI GDGCHC 2 cut(s) 40, 426
MluCI AATT 7 cut(s) 115, 165, 561, 726, 891, 1056, 1221
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 1 cut(s) 1290
Mph1103I ATGCAT 2 cut(s) 106, 1464
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 483
MspI CCGG 2 cut(s) 1103, 1268
MspR9I CCNGG 5 cut(s) 780, 945, 1110, 1275, 1440
Mva1269I GAATGC 1 cut(s) 936
MvaI CCWGG 5 cut(s) 780, 945, 1110, 1275, 1440
NarI GGCGCC 1 cut(s) 133
NdeI CATATG 1 cut(s) 428
NdeII GATC 2 cut(s) 341, 494
NheI GCTAGC 5 cut(s) 671, 836, 1001, 1166, 1331
NlaIII CATG 4 cut(s) 108, 802, 1297, 1462
NlaIV GGNNCC 6 cut(s) 39, 134, 424, 441, 1107, 1272
NmuCI GTSAC 4 cut(s) 126, 284, 1231, 1396
NsiI ATGCAT 2 cut(s) 106, 1464
NspV TTCGAA 1 cut(s) 531
PaqCI CACCTGC 3 cut(s) 569, 734, 899
PceI AGGCCT 4 cut(s) 604, 1099, 1264, 1429
PctI GAATGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 5 cut(s) 310, 659, 989, 1154, 1319
PfoI TCCNGGA 5 cut(s) 778, 943, 1108, 1273, 1438
PkrI GCNGC 5 cut(s) 84, 469, 577, 742, 907
PleI GAGTC 1 cut(s) 1289
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 1289
Psp6I CCWGG 5 cut(s) 778, 943, 1108, 1273, 1438
PspGI CCWGG 5 cut(s) 778, 943, 1108, 1273, 1438
PspN4I GGNNCC 6 cut(s) 39, 134, 424, 441, 1107, 1272
PspOMI GGGCCC 1 cut(s) 422
PspPI GGNCC 2 cut(s) 422, 423
PstI CTGCAG 6 cut(s) 580, 599, 745, 910, 1075, 1405
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 5 cut(s) 83, 468, 576, 741, 906
Sau3AI GATC 2 cut(s) 341, 494
Sau96I GGNCC 2 cut(s) 422, 423
SchI GAGTC 1 cut(s) 1290
ScrFI CCNGG 5 cut(s) 780, 945, 1110, 1275, 1440
SduI GDGCHC 2 cut(s) 40, 426
SfoI GGCGCC 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 7 cut(s) 115, 165, 561, 726, 891, 1056, 1221
SseBI AGGCCT 4 cut(s) 604, 1099, 1264, 1429
SsiI CCGC 1 cut(s) 955
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 6 cut(s) 351, 672, 837, 1002, 1167, 1332
StuI AGGCCT 4 cut(s) 604, 1099, 1264, 1429
StyD4I CCNGG 5 cut(s) 778, 943, 1108, 1273, 1438
StyI CCWWGG 2 cut(s) 203, 350
TaaI ACNGT 2 cut(s) 199, 845
TaiI ACGT 1 cut(s) 147
TaqI TCGA 4 cut(s) 497, 531, 662, 1322
TasI AATT 7 cut(s) 115, 165, 561, 726, 891, 1056, 1221
TfiI GAWTC 5 cut(s) 310, 659, 989, 1154, 1319
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 6 cut(s) 289, 562, 727, 850, 892, 1387
TseFI GTSAC 4 cut(s) 126, 284, 1231, 1396
TseI GCWGC 5 cut(s) 82, 467, 575, 740, 905
Tsp45I GTSAC 4 cut(s) 126, 284, 1231, 1396
TspDTI ATGAA 3 cut(s) 516, 1176, 1341
TspRI CASTG 6 cut(s) 289, 562, 727, 850, 892, 1387
XagI CCTNNNNNAGG 1 cut(s) 598
XapI RAATTY 7 cut(s) 115, 165, 561, 726, 891, 1056, 1221
XmaJI CCTAGG 1 cut(s) 350
XmiI GTMKAC 4 cut(s) 590, 920, 995, 1160
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 6 cut(s) 351, 672, 837, 1002, 1167, 1332
Zsp2I ATGCAT 2 cut(s) 106, 1464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.