pycom02g05960

DNA binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
4017822 .. 4019667
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05960.2

Sequence Viewer

Length: 1077 bp
ATGGAAGCCGGCAATTCGACCGTTGCCGTGTCAAGGTTGAAGAGGGAAGATTGCGAGCGCCCCAAAAACGACTCTCGCTTCTCCAATTGGAAGATATTAGTTGGCCCTTTTGATTGGGAAGACCATTCGCTGGGCAAAGAAGGAGCTGAAAGATACAGAGTTCATAACCTCCCCAAAAAGGAGAGTCCCGGTGTCTATGAACTTGGGGTTTCCGGTTGTAGCAGCCTAGGCCGTGAGAGTGGGAAGCTTGACCCAGGCTGCGTAGTCCCGGTGTACCTTGGACAAGCTGATAATGCGAGGACTCGACTTCAGCAATACGGTCGTTCAGGTGCTCATTTGGGCAATGGCAGTTCAACTGATCATCCTACTGACTGTGTCCGAAGGGAAATGGGGCGCGGATTGTTTGAGGACATACTGTCAAGAGGCTACCCCATTGTGTATAGATGGGCTCCTATGGAAAACAAAAGCGACGCACTGAAAACAGAAAATCAACTGCTTGATACATATGATTATGCATGGAATAGAACCAATAATGGAGCAAGGCGCCCTGATGATGTCCATCGAAAACTCAAGAATATATCTTCAAGCACTACGCAACGTACTGACATTGCCCAGGAGCTTCTTCCTTCCAGTCAGAAGAAAGTGGGCATCAGAATTGAGTCAAGCAAACCAATTTCAACGGGTGACAAATTCGGTGCTTATGATGACAGGGAGATCCACAACTCCCCTTGTCGGGTCTTCAAGCTCGGCAGAGCACAGCCTAGGTTGGTTTCGAATAGAAGCATTACTGAGGAGAATACTAGTATAATTTGTGGGGCGGATGTAGGAGATGGTTCTGTTTGCAGAACAGCACCAGTTCCCGGAAGACAGAGGTGTGCTGAACACAAAGGGATGAGGGCTAAGGGGTCAACCAGAGTTGGGATATCAAACAGCAATGTCGACTCACAGTACCGCTTTATCAGCAACCATGATTCAGTAGAGCCTTGCGGATTCATCTTGGCTGATGGATCGCCTTGTGGAAGGCATCCTATTCAAGGGCGGAAAAGGTGTAATCAGCATAAAGGGAGAAGAATTTAG

Protein Analysis

359

Amino Acids

39.8

Weight (kDa)

9.34

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 130
AccI GTMKAC 1 cut(s) 939
AccII CGCG 1 cut(s) 396
AciI CCGC 5 cut(s) 396, 818, 952, 987, 1039
AclWI GGATC 2 cut(s) 709, 1015
AcsI RAATTY 2 cut(s) 689, 1071
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 544
AfaI GTAC 3 cut(s) 275, 601, 950
AfiI CCNNNNNNNGG 8 cut(s) 33, 130, 178, 732, 733, 860, 918, 1034
AgsI TTSAA 6 cut(s) 40, 354, 585, 678, 742, 1034
AhdI GACNNNNNGTC 1 cut(s) 415
AhlI ACTAGT 1 cut(s) 800
AjnI CCWGG 2 cut(s) 253, 612
AluBI AGCT 5 cut(s) 146, 247, 287, 619, 745
AluI AGCT 5 cut(s) 146, 247, 287, 619, 745
Alw21I GWGCWC 2 cut(s) 334, 757
AlwI GGATC 2 cut(s) 709, 1015
AoxI GGCC 2 cut(s) 103, 229
ApeKI GCWGC 2 cut(s) 222, 258
ApoI RAATTY 2 cut(s) 689, 1071
AspA2I CCTAGG 2 cut(s) 226, 761
AspLEI GCGC 3 cut(s) 60, 396, 546
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 3 cut(s) 189, 269, 861
AsuHPI GGTGA 1 cut(s) 695
AsuII TTCGAA 1 cut(s) 773
AvrII CCTAGG 2 cut(s) 226, 761
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 3 cut(s) 126, 730, 871
Bbv12I GWGCWC 2 cut(s) 334, 757
BbvI GCAGC 2 cut(s) 234, 245
BccI CCATC 4 cut(s) 438, 567, 824, 998
BceAI ACGGC 2 cut(s) 11, 216
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 2 cut(s) 255, 614
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 3 cut(s) 189, 269, 861
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 3 cut(s) 227, 762, 801
BfoI RGCGCY 2 cut(s) 61, 547
BisI GCNGC 2 cut(s) 223, 259
BlnI CCTAGG 2 cut(s) 226, 761
BlsI GCNGC 2 cut(s) 224, 260
Bme1390I CCNGG 5 cut(s) 189, 255, 269, 614, 861
BmeRI GACNNNNNGTC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 450, 545
BmrFI CCNGG 5 cut(s) 189, 255, 269, 614, 861
BmsI GCATC 2 cut(s) 657, 1033
BpiI GAAGAC 3 cut(s) 126, 730, 871
Bpu10I CCTNAGC 1 cut(s) 900
Bpu14I TTCGAA 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 3 cut(s) 189, 269, 861
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 544
BsaJI CCNNGG 5 cut(s) 226, 253, 277, 612, 761
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 8 cut(s) 33, 130, 178, 732, 733, 860, 918, 1034
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 630, 854
Bse3DI GCAATG 3 cut(s) 349, 606, 940
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 2 cut(s) 255, 614
BseDI CCNNGG 5 cut(s) 226, 253, 277, 612, 761
BseGI GGATG 4 cut(s) 361, 826, 897, 1024
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 8 cut(s) 33, 130, 178, 732, 733, 860, 918, 1034
BseMI GCAATG 3 cut(s) 349, 606, 940
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 2 cut(s) 630, 854
BseRI GAGGAG 1 cut(s) 806
BseXI GCAGC 2 cut(s) 234, 245
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 2 cut(s) 21, 322
BshFI GGCC 2 cut(s) 105, 231
BshNI GGYRCC 1 cut(s) 543
BsiEI CGRYCG 2 cut(s) 21, 322
BsiHKAI GWGCWC 2 cut(s) 334, 757
BsiSI CCGG 5 cut(s) 9, 189, 213, 269, 861
BslFI GGGAC 2 cut(s) 171, 251
BslI CCNNNNNNNGG 8 cut(s) 33, 130, 178, 732, 733, 860, 918, 1034
BsmFI GGGAC 2 cut(s) 171, 251
BsnI GGCC 2 cut(s) 105, 231
Bsp119I TTCGAA 1 cut(s) 773
Bsp1286I GDGCHC 3 cut(s) 334, 451, 757
Bsp143I GATC 3 cut(s) 358, 714, 1007
BspACI CCGC 5 cut(s) 396, 818, 952, 987, 1039
BspANI GGCC 2 cut(s) 105, 231
BspCNI CTCAG 1 cut(s) 781
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 450, 545
BspPI GGATC 2 cut(s) 709, 1015
BspT104I TTCGAA 1 cut(s) 773
BspT107I GGYRCC 1 cut(s) 543
BsrDI GCAATG 3 cut(s) 349, 606, 940
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 2 cut(s) 630, 854
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 5 cut(s) 226, 253, 277, 612, 761
BssMI GATC 3 cut(s) 358, 714, 1007
BssNI GRCGYC 1 cut(s) 544
BssT1I CCWWGG 3 cut(s) 226, 277, 761
Bst2UI CCWGG 2 cut(s) 255, 614
Bst4CI ACNGT 5 cut(s) 22, 320, 374, 417, 948
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 544
BstBI TTCGAA 1 cut(s) 773
BstC8I GCNNGC 2 cut(s) 10, 56
BstDEI CTNAG 2 cut(s) 789, 900
BstENI CCTNNNNNAGG 1 cut(s) 1032
BstF5I GGATG 4 cut(s) 361, 826, 897, 1024
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 2 cut(s) 61, 547
BstHHI GCGC 3 cut(s) 60, 396, 546
BstKTI GATC 3 cut(s) 361, 717, 1010
BstMBI GATC 3 cut(s) 358, 714, 1007
BstMCI CGRYCG 2 cut(s) 21, 322
BstMWI GCNNNNNNNGC 3 cut(s) 228, 293, 960
BstNI CCWGG 2 cut(s) 255, 614
BstSCI CCNGG 5 cut(s) 187, 253, 267, 612, 859
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 2 cut(s) 234, 245
BstV2I GAAGAC 3 cut(s) 126, 730, 871
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuRI GGCC 2 cut(s) 105, 231
BtsCI GGATG 4 cut(s) 361, 826, 897, 1024
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 2 cut(s) 10, 56
CfoI GCGC 3 cut(s) 60, 396, 546
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 274, 600, 949
CviAII CATG 2 cut(s) 516, 968
CviQI GTAC 3 cut(s) 274, 600, 949
DdeI CTNAG 2 cut(s) 789, 900
DinI GGCGCC 1 cut(s) 545
DpnI GATC 3 cut(s) 360, 716, 1009
DpnII GATC 3 cut(s) 358, 714, 1007
DriI GACNNNNNGTC 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 2 cut(s) 833, 1054
Eco130I CCWWGG 3 cut(s) 226, 277, 761
Eco24I GRGCYC 1 cut(s) 451
Eco32I GATATC 1 cut(s) 924
Eco57I CTGAAG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 1032
EcoRII CCWGG 2 cut(s) 253, 612
EcoRV GATATC 1 cut(s) 924
EcoT14I CCWWGG 3 cut(s) 226, 277, 761
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 451
EgeI GGCGCC 1 cut(s) 545
EheI GGCGCC 1 cut(s) 545
ErhI CCWWGG 3 cut(s) 226, 277, 761
FaeI CATG 2 cut(s) 519, 971
FaqI GGGAC 2 cut(s) 171, 251
FatI CATG 2 cut(s) 515, 967
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 2 cut(s) 223, 259
FokI GGATG 4 cut(s) 348, 833, 904, 1011
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 223, 259
FspBI CTAG 3 cut(s) 227, 762, 801
GlaI GCGC 3 cut(s) 59, 395, 545
GluI GCNGC 2 cut(s) 223, 259
GsaI CCCAGC 1 cut(s) 134
HaeII RGCGCY 2 cut(s) 61, 547
HaeIII GGCC 2 cut(s) 105, 231
HapII CCGG 5 cut(s) 9, 189, 213, 269, 861
HgaI GACGC 1 cut(s) 479
HhaI GCGC 3 cut(s) 60, 396, 546
Hin1I GRCGYC 1 cut(s) 544
Hin1II CATG 2 cut(s) 519, 971
Hin6I GCGC 3 cut(s) 58, 394, 544
HinP1I GCGC 3 cut(s) 58, 394, 544
HincII GTYRAC 2 cut(s) 909, 940
HindII GTYRAC 2 cut(s) 909, 940
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 7 cut(s) 71, 184, 301, 659, 941, 971, 990
HpaII CCGG 5 cut(s) 9, 189, 213, 269, 861
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 3 cut(s) 274, 909, 940
Hpy188I TCNGA 3 cut(s) 380, 636, 653
Hpy188III TCNNGA 2 cut(s) 420, 571
Hpy8I GTNNAC 3 cut(s) 274, 909, 940
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 4 cut(s) 134, 375, 636, 1014
HpyCH4III ACNGT 5 cut(s) 22, 320, 374, 417, 948
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 2 cut(s) 515, 843
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 293, 960
HpyF3I CTNAG 2 cut(s) 789, 900
HpySE526I ACGT 1 cut(s) 598
Hsp92I GRCGYC 1 cut(s) 544
Hsp92II CATG 2 cut(s) 519, 971
HspAI GCGC 3 cut(s) 58, 394, 544
KasI GGCGCC 1 cut(s) 543
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 358, 714, 1007
LmnI GCTCC 4 cut(s) 143, 454, 536, 616
Lsp1109I GCAGC 2 cut(s) 234, 245
LweI GCATC 2 cut(s) 657, 1033
MaeI CTAG 3 cut(s) 227, 762, 801
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 1 cut(s) 683
MalI GATC 3 cut(s) 360, 716, 1009
MboI GATC 3 cut(s) 358, 714, 1007
MboII GAAGA 9 cut(s) 52, 59, 103, 131, 573, 614, 649, 730, 876
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 3 cut(s) 334, 451, 757
MluCI AATT 7 cut(s) 13, 85, 654, 672, 689, 807, 1071
Mly113I GGCGCC 1 cut(s) 544
MlyI GAGTC 5 cut(s) 65, 193, 295, 668, 935
MnlI CCTC 8 cut(s) 36, 179, 291, 400, 416, 784, 864, 888
Mph1103I ATGCAT 1 cut(s) 517
MroNI GCCGGC 1 cut(s) 8
MspI CCGG 5 cut(s) 9, 189, 213, 269, 861
MspR9I CCNGG 5 cut(s) 189, 255, 269, 614, 861
MunI CAATTG 1 cut(s) 85
MvaI CCWGG 2 cut(s) 255, 614
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 3 cut(s) 228, 293, 960
NaeI GCCGGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 544
NciI CCSGG 3 cut(s) 189, 269, 861
NdeI CATATG 1 cut(s) 505
NdeII GATC 3 cut(s) 358, 714, 1007
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 519, 971
NlaIV GGNNCC 2 cut(s) 450, 545
NmeAIII GCCGAG 1 cut(s) 726
NmuCI GTSAC 1 cut(s) 683
NsiI ATGCAT 1 cut(s) 517
NspV TTCGAA 1 cut(s) 773
PdiI GCCGGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 971, 990
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 859
PkrI GCNGC 2 cut(s) 224, 260
PleI GAGTC 5 cut(s) 65, 192, 295, 667, 935
PluTI GGCGCC 1 cut(s) 547
PpsI GAGTC 5 cut(s) 65, 192, 295, 667, 935
Psp6I CCWGG 2 cut(s) 253, 612
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 2 cut(s) 253, 612
PspN4I GGNNCC 2 cut(s) 450, 545
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 3 cut(s) 275, 601, 950
RsaNI GTAC 3 cut(s) 274, 600, 949
SalI GTCGAC 1 cut(s) 938
SatI GCNGC 2 cut(s) 223, 259
Sau3AI GATC 3 cut(s) 358, 714, 1007
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 5 cut(s) 65, 193, 295, 668, 935
ScrFI CCNGG 5 cut(s) 189, 255, 269, 614, 861
SduI GDGCHC 3 cut(s) 334, 451, 757
SfaNI GCATC 2 cut(s) 657, 1033
SfoI GGCGCC 1 cut(s) 545
SfuI TTCGAA 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
SpeI ACTAGT 1 cut(s) 800
Sse9I AATT 7 cut(s) 13, 85, 654, 672, 689, 807, 1071
SsiI CCGC 5 cut(s) 396, 818, 952, 987, 1039
SspDI GGCGCC 1 cut(s) 543
SspMI CTAG 3 cut(s) 227, 762, 801
StyD4I CCNGG 5 cut(s) 187, 253, 267, 612, 859
StyI CCWWGG 3 cut(s) 226, 277, 761
TaaI ACNGT 5 cut(s) 22, 320, 374, 417, 948
TaiI ACGT 1 cut(s) 601
TaqI TCGA 5 cut(s) 17, 304, 562, 773, 939
TasI AATT 7 cut(s) 13, 85, 654, 672, 689, 807, 1071
TfiI GAWTC 2 cut(s) 971, 990
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 2 cut(s) 222, 258
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 3 cut(s) 152, 213, 982
TspRI CASTG 1 cut(s) 480
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 1032
XapI RAATTY 2 cut(s) 689, 1071
XmaJI CCTAGG 2 cut(s) 226, 761
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 3 cut(s) 227, 762, 801
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.