DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26170 AT5G56780 |
| fragaria_vesca | FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231 |
| malus_domestica | MD02G1075500.v1.1 MD02G1076000.v1.1 |
| prunus_persica | Prupe.7G212600_v2.0.a1 |
| pyrus_communis | pycom02g05960 pycom02g06030 |
| rosa_chinensis | RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041 |
| rosa_laevigata | RLG00000016361 RLG00000016362 |
| rosa_multiflora | Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00148580 Rroxscaffold_2G00148600 |
| rosa_rugosa | Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800 |
| rosa_samantha | Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300 |
| rosa_wichuraiana | Rw0G010360 Rw2G006880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 543 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 130 |
| AccI | GTMKAC | 1 cut(s) | 939 |
| AccII | CGCG | 1 cut(s) | 396 |
| AciI | CCGC | 5 cut(s) | 396, 818, 952, 987, 1039 |
| AclWI | GGATC | 2 cut(s) | 709, 1015 |
| AcsI | RAATTY | 2 cut(s) | 689, 1071 |
| AcuI | CTGAAG | 1 cut(s) | 293 |
| AcyI | GRCGYC | 1 cut(s) | 544 |
| AfaI | GTAC | 3 cut(s) | 275, 601, 950 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 33, 130, 178, 732, 733, 860, 918, 1034 |
| AgsI | TTSAA | 6 cut(s) | 40, 354, 585, 678, 742, 1034 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 415 |
| AhlI | ACTAGT | 1 cut(s) | 800 |
| AjnI | CCWGG | 2 cut(s) | 253, 612 |
| AluBI | AGCT | 5 cut(s) | 146, 247, 287, 619, 745 |
| AluI | AGCT | 5 cut(s) | 146, 247, 287, 619, 745 |
| Alw21I | GWGCWC | 2 cut(s) | 334, 757 |
| AlwI | GGATC | 2 cut(s) | 709, 1015 |
| AoxI | GGCC | 2 cut(s) | 103, 229 |
| ApeKI | GCWGC | 2 cut(s) | 222, 258 |
| ApoI | RAATTY | 2 cut(s) | 689, 1071 |
| AspA2I | CCTAGG | 2 cut(s) | 226, 761 |
| AspLEI | GCGC | 3 cut(s) | 60, 396, 546 |
| AspS9I | GGNCC | 1 cut(s) | 104 |
| AsuC2I | CCSGG | 3 cut(s) | 189, 269, 861 |
| AsuHPI | GGTGA | 1 cut(s) | 695 |
| AsuII | TTCGAA | 1 cut(s) | 773 |
| AvrII | CCTAGG | 2 cut(s) | 226, 761 |
| BanI | GGYRCC | 1 cut(s) | 543 |
| BanII | GRGCYC | 1 cut(s) | 451 |
| BbsI | GAAGAC | 3 cut(s) | 126, 730, 871 |
| Bbv12I | GWGCWC | 2 cut(s) | 334, 757 |
| BbvI | GCAGC | 2 cut(s) | 234, 245 |
| BccI | CCATC | 4 cut(s) | 438, 567, 824, 998 |
| BceAI | ACGGC | 2 cut(s) | 11, 216 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 302, 336 |
| BciT130I | CCWGG | 2 cut(s) | 255, 614 |
| BclI | TGATCA | 1 cut(s) | 358 |
| BcnI | CCSGG | 3 cut(s) | 189, 269, 861 |
| BcuI | ACTAGT | 1 cut(s) | 800 |
| BfaI | CTAG | 3 cut(s) | 227, 762, 801 |
| BfoI | RGCGCY | 2 cut(s) | 61, 547 |
| BisI | GCNGC | 2 cut(s) | 223, 259 |
| BlnI | CCTAGG | 2 cut(s) | 226, 761 |
| BlsI | GCNGC | 2 cut(s) | 224, 260 |
| Bme1390I | CCNGG | 5 cut(s) | 189, 255, 269, 614, 861 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 415 |
| BmgT120I | GGNCC | 1 cut(s) | 104 |
| BmiI | GGNNCC | 2 cut(s) | 450, 545 |
| BmrFI | CCNGG | 5 cut(s) | 189, 255, 269, 614, 861 |
| BmsI | GCATC | 2 cut(s) | 657, 1033 |
| BpiI | GAAGAC | 3 cut(s) | 126, 730, 871 |
| Bpu10I | CCTNAGC | 1 cut(s) | 900 |
| Bpu14I | TTCGAA | 1 cut(s) | 773 |
| BpuEI | CTTGAG | 1 cut(s) | 554 |
| BpuMI | CCSGG | 3 cut(s) | 189, 269, 861 |
| BsaBI | GATNNNNATC | 1 cut(s) | 558 |
| BsaHI | GRCGYC | 1 cut(s) | 544 |
| BsaJI | CCNNGG | 5 cut(s) | 226, 253, 277, 612, 761 |
| BsaWI | WCCGGW | 1 cut(s) | 212 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 33, 130, 178, 732, 733, 860, 918, 1034 |
| Bse118I | RCCGGY | 1 cut(s) | 8 |
| Bse1I | ACTGG | 2 cut(s) | 630, 854 |
| Bse3DI | GCAATG | 3 cut(s) | 349, 606, 940 |
| Bse8I | GATNNNNATC | 1 cut(s) | 558 |
| BseBI | CCWGG | 2 cut(s) | 255, 614 |
| BseDI | CCNNGG | 5 cut(s) | 226, 253, 277, 612, 761 |
| BseGI | GGATG | 4 cut(s) | 361, 826, 897, 1024 |
| BseJI | GATNNNNATC | 1 cut(s) | 558 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 33, 130, 178, 732, 733, 860, 918, 1034 |
| BseMI | GCAATG | 3 cut(s) | 349, 606, 940 |
| BseMII | CTCAG | 1 cut(s) | 780 |
| BseNI | ACTGG | 2 cut(s) | 630, 854 |
| BseRI | GAGGAG | 1 cut(s) | 806 |
| BseXI | GCAGC | 2 cut(s) | 234, 245 |
| BseYI | CCCAGC | 1 cut(s) | 130 |
| Bsh1236I | CGCG | 1 cut(s) | 396 |
| Bsh1285I | CGRYCG | 2 cut(s) | 21, 322 |
| BshFI | GGCC | 2 cut(s) | 105, 231 |
| BshNI | GGYRCC | 1 cut(s) | 543 |
| BsiEI | CGRYCG | 2 cut(s) | 21, 322 |
| BsiHKAI | GWGCWC | 2 cut(s) | 334, 757 |
| BsiSI | CCGG | 5 cut(s) | 9, 189, 213, 269, 861 |
| BslFI | GGGAC | 2 cut(s) | 171, 251 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 33, 130, 178, 732, 733, 860, 918, 1034 |
| BsmFI | GGGAC | 2 cut(s) | 171, 251 |
| BsnI | GGCC | 2 cut(s) | 105, 231 |
| Bsp119I | TTCGAA | 1 cut(s) | 773 |
| Bsp1286I | GDGCHC | 3 cut(s) | 334, 451, 757 |
| Bsp143I | GATC | 3 cut(s) | 358, 714, 1007 |
| BspACI | CCGC | 5 cut(s) | 396, 818, 952, 987, 1039 |
| BspANI | GGCC | 2 cut(s) | 105, 231 |
| BspCNI | CTCAG | 1 cut(s) | 781 |
| BspFNI | CGCG | 1 cut(s) | 396 |
| BspLI | GGNNCC | 2 cut(s) | 450, 545 |
| BspPI | GGATC | 2 cut(s) | 709, 1015 |
| BspT104I | TTCGAA | 1 cut(s) | 773 |
| BspT107I | GGYRCC | 1 cut(s) | 543 |
| BsrDI | GCAATG | 3 cut(s) | 349, 606, 940 |
| BsrFI | RCCGGY | 1 cut(s) | 8 |
| BsrI | ACTGG | 2 cut(s) | 630, 854 |
| BssAI | RCCGGY | 1 cut(s) | 8 |
| BssECI | CCNNGG | 5 cut(s) | 226, 253, 277, 612, 761 |
| BssMI | GATC | 3 cut(s) | 358, 714, 1007 |
| BssNI | GRCGYC | 1 cut(s) | 544 |
| BssT1I | CCWWGG | 3 cut(s) | 226, 277, 761 |
| Bst2UI | CCWGG | 2 cut(s) | 255, 614 |
| Bst4CI | ACNGT | 5 cut(s) | 22, 320, 374, 417, 948 |
| Bst6I | CTCTTC | 1 cut(s) | 35 |
| BstACI | GRCGYC | 1 cut(s) | 544 |
| BstBI | TTCGAA | 1 cut(s) | 773 |
| BstC8I | GCNNGC | 2 cut(s) | 10, 56 |
| BstDEI | CTNAG | 2 cut(s) | 789, 900 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1032 |
| BstF5I | GGATG | 4 cut(s) | 361, 826, 897, 1024 |
| BstFNI | CGCG | 1 cut(s) | 396 |
| BstH2I | RGCGCY | 2 cut(s) | 61, 547 |
| BstHHI | GCGC | 3 cut(s) | 60, 396, 546 |
| BstKTI | GATC | 3 cut(s) | 361, 717, 1010 |
| BstMBI | GATC | 3 cut(s) | 358, 714, 1007 |
| BstMCI | CGRYCG | 2 cut(s) | 21, 322 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 228, 293, 960 |
| BstNI | CCWGG | 2 cut(s) | 255, 614 |
| BstSCI | CCNGG | 5 cut(s) | 187, 253, 267, 612, 859 |
| BstUI | CGCG | 1 cut(s) | 396 |
| BstV1I | GCAGC | 2 cut(s) | 234, 245 |
| BstV2I | GAAGAC | 3 cut(s) | 126, 730, 871 |
| BstX2I | RGATCY | 1 cut(s) | 714 |
| BstYI | RGATCY | 1 cut(s) | 714 |
| BsuRI | GGCC | 2 cut(s) | 105, 231 |
| BtsCI | GGATG | 4 cut(s) | 361, 826, 897, 1024 |
| BtsIMutI | CAGTG | 1 cut(s) | 473 |
| Cac8I | GCNNGC | 2 cut(s) | 10, 56 |
| CfoI | GCGC | 3 cut(s) | 60, 396, 546 |
| Cfr10I | RCCGGY | 1 cut(s) | 8 |
| Cfr13I | GGNCC | 1 cut(s) | 104 |
| CseI | GACGC | 1 cut(s) | 479 |
| Csp6I | GTAC | 3 cut(s) | 274, 600, 949 |
| CviAII | CATG | 2 cut(s) | 516, 968 |
| CviQI | GTAC | 3 cut(s) | 274, 600, 949 |
| DdeI | CTNAG | 2 cut(s) | 789, 900 |
| DinI | GGCGCC | 1 cut(s) | 545 |
| DpnI | GATC | 3 cut(s) | 360, 716, 1009 |
| DpnII | GATC | 3 cut(s) | 358, 714, 1007 |
| DriI | GACNNNNNGTC | 1 cut(s) | 415 |
| Eam1104I | CTCTTC | 1 cut(s) | 35 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 415 |
| EarI | CTCTTC | 1 cut(s) | 35 |
| EciI | GGCGGA | 2 cut(s) | 833, 1054 |
| Eco130I | CCWWGG | 3 cut(s) | 226, 277, 761 |
| Eco24I | GRGCYC | 1 cut(s) | 451 |
| Eco32I | GATATC | 1 cut(s) | 924 |
| Eco57I | CTGAAG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1032 |
| EcoRII | CCWGG | 2 cut(s) | 253, 612 |
| EcoRV | GATATC | 1 cut(s) | 924 |
| EcoT14I | CCWWGG | 3 cut(s) | 226, 277, 761 |
| EcoT22I | ATGCAT | 1 cut(s) | 517 |
| EcoT38I | GRGCYC | 1 cut(s) | 451 |
| EgeI | GGCGCC | 1 cut(s) | 545 |
| EheI | GGCGCC | 1 cut(s) | 545 |
| ErhI | CCWWGG | 3 cut(s) | 226, 277, 761 |
| FaeI | CATG | 2 cut(s) | 519, 971 |
| FaqI | GGGAC | 2 cut(s) | 171, 251 |
| FatI | CATG | 2 cut(s) | 515, 967 |
| FauNDI | CATATG | 1 cut(s) | 505 |
| FbaI | TGATCA | 1 cut(s) | 358 |
| FblI | GTMKAC | 1 cut(s) | 939 |
| Fnu4HI | GCNGC | 2 cut(s) | 223, 259 |
| FokI | GGATG | 4 cut(s) | 348, 833, 904, 1011 |
| FriOI | GRGCYC | 1 cut(s) | 451 |
| Fsp4HI | GCNGC | 2 cut(s) | 223, 259 |
| FspBI | CTAG | 3 cut(s) | 227, 762, 801 |
| GlaI | GCGC | 3 cut(s) | 59, 395, 545 |
| GluI | GCNGC | 2 cut(s) | 223, 259 |
| GsaI | CCCAGC | 1 cut(s) | 134 |
| HaeII | RGCGCY | 2 cut(s) | 61, 547 |
| HaeIII | GGCC | 2 cut(s) | 105, 231 |
| HapII | CCGG | 5 cut(s) | 9, 189, 213, 269, 861 |
| HgaI | GACGC | 1 cut(s) | 479 |
| HhaI | GCGC | 3 cut(s) | 60, 396, 546 |
| Hin1I | GRCGYC | 1 cut(s) | 544 |
| Hin1II | CATG | 2 cut(s) | 519, 971 |
| Hin6I | GCGC | 3 cut(s) | 58, 394, 544 |
| HinP1I | GCGC | 3 cut(s) | 58, 394, 544 |
| HincII | GTYRAC | 2 cut(s) | 909, 940 |
| HindII | GTYRAC | 2 cut(s) | 909, 940 |
| HindIII | AAGCTT | 1 cut(s) | 245 |
| HinfI | GANTC | 7 cut(s) | 71, 184, 301, 659, 941, 971, 990 |
| HpaII | CCGG | 5 cut(s) | 9, 189, 213, 269, 861 |
| HphI | GGTGA | 1 cut(s) | 695 |
| Hpy166II | GTNNAC | 3 cut(s) | 274, 909, 940 |
| Hpy188I | TCNGA | 3 cut(s) | 380, 636, 653 |
| Hpy188III | TCNNGA | 2 cut(s) | 420, 571 |
| Hpy8I | GTNNAC | 3 cut(s) | 274, 909, 940 |
| Hpy99I | CGWCG | 1 cut(s) | 473 |
| HpyAV | CCTTC | 4 cut(s) | 134, 375, 636, 1014 |
| HpyCH4III | ACNGT | 5 cut(s) | 22, 320, 374, 417, 948 |
| HpyCH4IV | ACGT | 1 cut(s) | 598 |
| HpyCH4V | TGCA | 2 cut(s) | 515, 843 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 228, 293, 960 |
| HpyF3I | CTNAG | 2 cut(s) | 789, 900 |
| HpySE526I | ACGT | 1 cut(s) | 598 |
| Hsp92I | GRCGYC | 1 cut(s) | 544 |
| Hsp92II | CATG | 2 cut(s) | 519, 971 |
| HspAI | GCGC | 3 cut(s) | 58, 394, 544 |
| KasI | GGCGCC | 1 cut(s) | 543 |
| KroI | GCCGGC | 1 cut(s) | 8 |
| KroNI | GCCGGC | 1 cut(s) | 10 |
| Ksp22I | TGATCA | 1 cut(s) | 358 |
| Kzo9I | GATC | 3 cut(s) | 358, 714, 1007 |
| LmnI | GCTCC | 4 cut(s) | 143, 454, 536, 616 |
| Lsp1109I | GCAGC | 2 cut(s) | 234, 245 |
| LweI | GCATC | 2 cut(s) | 657, 1033 |
| MaeI | CTAG | 3 cut(s) | 227, 762, 801 |
| MaeII | ACGT | 1 cut(s) | 598 |
| MaeIII | GTNAC | 1 cut(s) | 683 |
| MalI | GATC | 3 cut(s) | 360, 716, 1009 |
| MboI | GATC | 3 cut(s) | 358, 714, 1007 |
| MboII | GAAGA | 9 cut(s) | 52, 59, 103, 131, 573, 614, 649, 730, 876 |
| MfeI | CAATTG | 1 cut(s) | 85 |
| MflI | RGATCY | 1 cut(s) | 714 |
| MhlI | GDGCHC | 3 cut(s) | 334, 451, 757 |
| MluCI | AATT | 7 cut(s) | 13, 85, 654, 672, 689, 807, 1071 |
| Mly113I | GGCGCC | 1 cut(s) | 544 |
| MlyI | GAGTC | 5 cut(s) | 65, 193, 295, 668, 935 |
| MnlI | CCTC | 8 cut(s) | 36, 179, 291, 400, 416, 784, 864, 888 |
| Mph1103I | ATGCAT | 1 cut(s) | 517 |
| MroNI | GCCGGC | 1 cut(s) | 8 |
| MspI | CCGG | 5 cut(s) | 9, 189, 213, 269, 861 |
| MspR9I | CCNGG | 5 cut(s) | 189, 255, 269, 614, 861 |
| MunI | CAATTG | 1 cut(s) | 85 |
| MvaI | CCWGG | 2 cut(s) | 255, 614 |
| MvnI | CGCG | 1 cut(s) | 396 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 228, 293, 960 |
| NaeI | GCCGGC | 1 cut(s) | 10 |
| NarI | GGCGCC | 1 cut(s) | 544 |
| NciI | CCSGG | 3 cut(s) | 189, 269, 861 |
| NdeI | CATATG | 1 cut(s) | 505 |
| NdeII | GATC | 3 cut(s) | 358, 714, 1007 |
| NgoMIV | GCCGGC | 1 cut(s) | 8 |
| NlaIII | CATG | 2 cut(s) | 519, 971 |
| NlaIV | GGNNCC | 2 cut(s) | 450, 545 |
| NmeAIII | GCCGAG | 1 cut(s) | 726 |
| NmuCI | GTSAC | 1 cut(s) | 683 |
| NsiI | ATGCAT | 1 cut(s) | 517 |
| NspV | TTCGAA | 1 cut(s) | 773 |
| PdiI | GCCGGC | 1 cut(s) | 10 |
| PfeI | GAWTC | 2 cut(s) | 971, 990 |
| PflFI | GACNNNGTC | 1 cut(s) | 374 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 130 |
| PfoI | TCCNGGA | 1 cut(s) | 859 |
| PkrI | GCNGC | 2 cut(s) | 224, 260 |
| PleI | GAGTC | 5 cut(s) | 65, 192, 295, 667, 935 |
| PluTI | GGCGCC | 1 cut(s) | 547 |
| PpsI | GAGTC | 5 cut(s) | 65, 192, 295, 667, 935 |
| Psp6I | CCWGG | 2 cut(s) | 253, 612 |
| PspFI | CCCAGC | 1 cut(s) | 130 |
| PspGI | CCWGG | 2 cut(s) | 253, 612 |
| PspN4I | GGNNCC | 2 cut(s) | 450, 545 |
| PspPI | GGNCC | 1 cut(s) | 104 |
| PsuI | RGATCY | 1 cut(s) | 714 |
| PsyI | GACNNNGTC | 1 cut(s) | 374 |
| RsaI | GTAC | 3 cut(s) | 275, 601, 950 |
| RsaNI | GTAC | 3 cut(s) | 274, 600, 949 |
| SalI | GTCGAC | 1 cut(s) | 938 |
| SatI | GCNGC | 2 cut(s) | 223, 259 |
| Sau3AI | GATC | 3 cut(s) | 358, 714, 1007 |
| Sau96I | GGNCC | 1 cut(s) | 104 |
| SchI | GAGTC | 5 cut(s) | 65, 193, 295, 668, 935 |
| ScrFI | CCNGG | 5 cut(s) | 189, 255, 269, 614, 861 |
| SduI | GDGCHC | 3 cut(s) | 334, 451, 757 |
| SfaNI | GCATC | 2 cut(s) | 657, 1033 |
| SfoI | GGCGCC | 1 cut(s) | 545 |
| SfuI | TTCGAA | 1 cut(s) | 773 |
| SmlI | CTYRAG | 1 cut(s) | 569 |
| SmoI | CTYRAG | 1 cut(s) | 569 |
| SpeI | ACTAGT | 1 cut(s) | 800 |
| Sse9I | AATT | 7 cut(s) | 13, 85, 654, 672, 689, 807, 1071 |
| SsiI | CCGC | 5 cut(s) | 396, 818, 952, 987, 1039 |
| SspDI | GGCGCC | 1 cut(s) | 543 |
| SspMI | CTAG | 3 cut(s) | 227, 762, 801 |
| StyD4I | CCNGG | 5 cut(s) | 187, 253, 267, 612, 859 |
| StyI | CCWWGG | 3 cut(s) | 226, 277, 761 |
| TaaI | ACNGT | 5 cut(s) | 22, 320, 374, 417, 948 |
| TaiI | ACGT | 1 cut(s) | 601 |
| TaqI | TCGA | 5 cut(s) | 17, 304, 562, 773, 939 |
| TasI | AATT | 7 cut(s) | 13, 85, 654, 672, 689, 807, 1071 |
| TfiI | GAWTC | 2 cut(s) | 971, 990 |
| TscAI | CASTG | 1 cut(s) | 480 |
| TseFI | GTSAC | 1 cut(s) | 683 |
| TseI | GCWGC | 2 cut(s) | 222, 258 |
| Tsp45I | GTSAC | 1 cut(s) | 683 |
| TspDTI | ATGAA | 3 cut(s) | 152, 213, 982 |
| TspRI | CASTG | 1 cut(s) | 480 |
| Tth111I | GACNNNGTC | 1 cut(s) | 374 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 130 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1032 |
| XapI | RAATTY | 2 cut(s) | 689, 1071 |
| XmaJI | CCTAGG | 2 cut(s) | 226, 761 |
| XmiI | GTMKAC | 1 cut(s) | 939 |
| XspI | CTAG | 3 cut(s) | 227, 762, 801 |
| Zsp2I | ATGCAT | 1 cut(s) | 517 |