Prupe.7G212600_v2.0.a1

DNA binding

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
19373691 .. 19376975
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G212600.1

Sequence Viewer

Length: 1344 bp
ATGGGAGCCAGCGACTTGACCGTTGCTGTGACAAGGTTGAAGAGAGAAGATTGCAAGCGCACCAAACACGACTCTCACTTCTCCAATTGGAAGATTCTGGTTGGTCCTTCGGATTGGGAAGACTATTCACTGGGAATAGAAGGGGCTGAAAGATACAGGGTTCATAACCTCCCAGAAAAGGAGAGTCCAGGTGTCTATGAACTTGGCATTGCATTCTTGCGTACTGGTTTAGGCCGTGAGATTGGCAAGCTTGACCCAGACTATATAGTCCCAGTGTACCTTGGACAAGCTGATAATGTGAGGACACGACTTCAGCAATATGGTCGTTCAGGTGCTCATTTGGGCAATGGCTGCCCAACTGGTCATCCTAGTGACCGTGTCCAAAAGGGGCCGGGATTGTTTGCTGAGATACTGTCAAGAGACTACCCCGTTGTGTACAGATGGGCTCCTATGGAAAACAAAAGTGTTGCGCTGAAAACAGAAACTCAGCTGCTTAACACATTTGATTATGCATGGAACACAAACATTAATGGGGCAAGACGCCCCGATGATGTCCTTAAAAAACTTAAGATGGTATCTTCAAGCCCTACACGATTTGTTAATATTGCCCAGAAGCTTGTGCCTTTCAGTCCGAAGAAAGTGGGTACTAGGATTGAATCAAGCATATTGCTTTCACCAGAGGATAAGTTCAGTGCTTATGCTAATAGGGAGAGCCACAATCCCCTTTCTCGAGTTTTCAAGCTTGGCAGATCACAGCCTAGGTTAGTTTTGGATAGAATTGGCATTACTCAGGAGAATACTATAATTTGTGGGGTGGATGTAGGTGATGGCTCCATTTGCAGAATGCCACCAGTTCCAGGAAGAAAGAGGTGTGCTAAACACAAAGGGATGAGGATTAATATGTCAACTAGAGTTGGGATATCAAATAGCACCGTTGACTCAGAATCAGAATGCAGTGCTATTAGCAGCATAGAGTTTCATGGTGCTCAAATTATTAACAGTGATCCAGTAGAGAGCTTCACTTCCATTTGTGGATTCATCTTGGCTGATGGCTCCGTTTGCAGAACGCCACCAGTTCCAGGAAGAAAGAGGTGTGCTAAACACAAAGGGATGAGGATTAATAGGTCAACTAGAGTTGGGATATCAAATAGCACCGTTGACTCAGAATCAGAATGCAGTGCTATTAGCAGCGGAGTGTTTCATGATGCTCAAATTATTAACCGTTATCCAGTAGAGAGCTTCACTTCCATTTGTGGATTCATCTTGGCTGATGGCTCTTCTTGCAGAAGGCATCCAATTCAAGGGAGGAAAAGATGTGATGAACATAAAGGGAAAAGAATCTAG

Protein Analysis

448

Amino Acids

49.5

Weight (kDa)

9.41

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AciI CCGC 1 cut(s) 1191
AclWI GGATC 1 cut(s) 998
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 541
AfaI GTAC 4 cut(s) 223, 278, 437, 646
AfiI CCNNNNNNNGG 4 cut(s) 178, 857, 1079, 1301
AflII CTTAAG 1 cut(s) 566
AgsI TTSAA 5 cut(s) 40, 582, 656, 739, 1301
AjnI CCWGG 3 cut(s) 187, 856, 1078
AluBI AGCT 7 cut(s) 250, 290, 490, 616, 742, 1017, 1239
AluI AGCT 7 cut(s) 250, 290, 490, 616, 742, 1017, 1239
Alw21I GWGCWC 2 cut(s) 337, 988
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 1 cut(s) 998
Ama87I CYCGRG 1 cut(s) 729
AoxI GGCC 2 cut(s) 232, 389
ApeKI GCWGC 4 cut(s) 351, 490, 966, 1188
AseI ATTAAT 3 cut(s) 528, 897, 1119
AspA2I CCTAGG 1 cut(s) 758
AspLEI GCGC 2 cut(s) 60, 472
AspS9I GGNCC 2 cut(s) 104, 389
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 666, 836
AvaI CYCGRG 1 cut(s) 729
AvaII GGWCC 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 758
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 337, 988
BbvI GCAGC 4 cut(s) 338, 477, 978, 1200
BccI CCATC 5 cut(s) 435, 565, 821, 1043, 1265
BceAI ACGGC 1 cut(s) 219
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 3 cut(s) 189, 858, 1080
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 6 cut(s) 369, 648, 759, 909, 1131, 1342
BfrI CTTAAG 1 cut(s) 566
BisI GCNGC 4 cut(s) 352, 491, 967, 1189
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 4 cut(s) 353, 492, 968, 1190
Bme1390I CCNGG 4 cut(s) 189, 393, 858, 1080
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 729
BmgT120I GGNCC 2 cut(s) 104, 389
BmiI GGNNCC 5 cut(s) 7, 390, 447, 832, 1054
BmrFI CCNGG 4 cut(s) 189, 393, 858, 1080
BmrI ACTGGG 2 cut(s) 140, 266
BmsI GCATC 2 cut(s) 1195, 1300
BmuI ACTGGG 2 cut(s) 140, 266
BpiI GAAGAC 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 280, 758
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 857, 1079, 1301
Bse1I ACTGG 8 cut(s) 135, 229, 272, 364, 851, 1007, 1073, 1229
Bse3DI GCAATG 2 cut(s) 207, 352
BseBI CCWGG 3 cut(s) 189, 858, 1080
BseDI CCNNGG 2 cut(s) 280, 758
BseGI GGATG 5 cut(s) 364, 823, 894, 1116, 1291
BseLI CCNNNNNNNGG 4 cut(s) 178, 857, 1079, 1301
BseMI GCAATG 2 cut(s) 207, 352
BseMII CTCAG 5 cut(s) 396, 500, 803, 954, 1176
BseNI ACTGG 8 cut(s) 135, 229, 272, 364, 851, 1007, 1073, 1229
BseXI GCAGC 4 cut(s) 338, 477, 978, 1200
BshFI GGCC 2 cut(s) 234, 391
BsiHKAI GWGCWC 2 cut(s) 337, 988
BsiHKCI CYCGRG 1 cut(s) 729
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 178, 857, 1079, 1301
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 4 cut(s) 212, 849, 956, 1178
BsnI GGCC 2 cut(s) 234, 391
BsoBI CYCGRG 1 cut(s) 729
Bsp1286I GDGCHC 3 cut(s) 337, 448, 988
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 2 cut(s) 749, 1003
BspACI CCGC 1 cut(s) 1191
BspANI GGCC 2 cut(s) 234, 391
BspCNI CTCAG 5 cut(s) 397, 499, 802, 953, 1175
BspHI TCATGA 1 cut(s) 1201
BspLI GGNNCC 5 cut(s) 7, 390, 447, 832, 1054
BspPI GGATC 1 cut(s) 998
BspQI GCTCTTC 1 cut(s) 1282
BspTI CTTAAG 1 cut(s) 566
BsrDI GCAATG 2 cut(s) 207, 352
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 8 cut(s) 135, 229, 272, 364, 851, 1007, 1073, 1229
BssECI CCNNGG 2 cut(s) 280, 758
BssMI GATC 2 cut(s) 749, 1003
BssNI GRCGYC 1 cut(s) 541
BssT1I CCWWGG 2 cut(s) 280, 758
Bst2UI CCWGG 3 cut(s) 189, 858, 1080
Bst4CI ACNGT 7 cut(s) 22, 377, 414, 934, 1001, 1156, 1223
Bst6I CTCTTC 2 cut(s) 35, 1282
BstACI GRCGYC 1 cut(s) 541
BstAFI CTTAAG 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 351
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 3 cut(s) 10, 56, 248
BstDEI CTNAG 5 cut(s) 405, 486, 789, 940, 1162
BstF5I GGATG 5 cut(s) 364, 823, 894, 1116, 1291
BstHHI GCGC 2 cut(s) 60, 472
BstKTI GATC 2 cut(s) 752, 1006
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 749, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 351, 837, 1059, 1281
BstNI CCWGG 3 cut(s) 189, 858, 1080
BstSCI CCNGG 4 cut(s) 187, 391, 856, 1078
BstV1I GCAGC 4 cut(s) 338, 477, 978, 1200
BstV2I GAAGAC 1 cut(s) 126
BsuRI GGCC 2 cut(s) 234, 391
BtsCI GGATG 5 cut(s) 364, 823, 894, 1116, 1291
BtsI GCAGTG 2 cut(s) 961, 1183
BtsIMutI CAGTG 6 cut(s) 128, 279, 697, 961, 1006, 1183
Cac8I GCNNGC 3 cut(s) 10, 56, 248
CciI TCATGA 1 cut(s) 1201
CfoI GCGC 2 cut(s) 60, 472
Cfr13I GGNCC 2 cut(s) 104, 389
CseI GACGC 1 cut(s) 549
Csp6I GTAC 4 cut(s) 222, 277, 436, 645
CviAII CATG 3 cut(s) 513, 980, 1202
CviQI GTAC 4 cut(s) 222, 277, 436, 645
DdeI CTNAG 5 cut(s) 405, 486, 789, 940, 1162
DpnI GATC 2 cut(s) 751, 1005
DpnII GATC 2 cut(s) 749, 1003
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 35, 1282
EarI CTCTTC 2 cut(s) 35, 1282
Eco130I CCWWGG 2 cut(s) 280, 758
Eco24I GRGCYC 1 cut(s) 448
Eco32I GATATC 2 cut(s) 921, 1143
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 729
EcoRII CCWGG 3 cut(s) 187, 856, 1078
EcoRV GATATC 2 cut(s) 921, 1143
EcoT14I CCWWGG 2 cut(s) 280, 758
EcoT22I ATGCAT 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 2 cut(s) 280, 758
FaeI CATG 3 cut(s) 516, 983, 1205
FaqI GGGAC 1 cut(s) 254
FatI CATG 3 cut(s) 512, 979, 1201
Fnu4HI GCNGC 4 cut(s) 352, 491, 967, 1189
FokI GGATG 5 cut(s) 351, 830, 901, 1123, 1278
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 4 cut(s) 352, 491, 967, 1189
FspBI CTAG 6 cut(s) 369, 648, 759, 909, 1131, 1342
GlaI GCGC 2 cut(s) 59, 471
GluI GCNGC 4 cut(s) 352, 491, 967, 1189
HaeIII GGCC 2 cut(s) 234, 391
HapII CCGG 1 cut(s) 392
HgaI GACGC 1 cut(s) 549
HhaI GCGC 2 cut(s) 60, 472
Hin1I GRCGYC 1 cut(s) 541
Hin1II CATG 3 cut(s) 516, 983, 1205
Hin6I GCGC 2 cut(s) 58, 470
HinP1I GCGC 2 cut(s) 58, 470
HincII GTYRAC 4 cut(s) 906, 937, 1128, 1159
HindII GTYRAC 4 cut(s) 906, 937, 1128, 1159
HindIII AAGCTT 3 cut(s) 248, 614, 740
HpaII CCGG 1 cut(s) 392
HphI GGTGA 2 cut(s) 666, 836
Hpy166II GTNNAC 6 cut(s) 277, 436, 906, 937, 1128, 1159
Hpy188I TCNGA 6 cut(s) 112, 633, 943, 949, 1165, 1171
Hpy188III TCNNGA 4 cut(s) 417, 729, 791, 1202
Hpy8I GTNNAC 6 cut(s) 277, 436, 906, 937, 1128, 1159
HpyAV CCTTC 3 cut(s) 117, 134, 1281
HpyCH4III ACNGT 7 cut(s) 22, 377, 414, 934, 1001, 1156, 1223
HpyCH4V TGCA 8 cut(s) 54, 212, 512, 840, 954, 1062, 1176, 1284
HpyF10VI GCNNNNNNNGC 4 cut(s) 351, 837, 1059, 1281
HpyF3I CTNAG 5 cut(s) 405, 486, 789, 940, 1162
Hsp92I GRCGYC 1 cut(s) 541
Hsp92II CATG 3 cut(s) 516, 983, 1205
HspAI GCGC 2 cut(s) 58, 470
Kzo9I GATC 2 cut(s) 749, 1003
LguI GCTCTTC 1 cut(s) 1282
LmnI GCTCC 4 cut(s) 5, 451, 836, 1058
Lsp1109I GCAGC 4 cut(s) 338, 477, 978, 1200
LweI GCATC 2 cut(s) 1195, 1300
MaeI CTAG 6 cut(s) 369, 648, 759, 909, 1131, 1342
MaeIII GTNAC 2 cut(s) 28, 371
MalI GATC 2 cut(s) 751, 1005
MboI GATC 2 cut(s) 749, 1003
MboII GAAGA 9 cut(s) 52, 59, 103, 131, 570, 646, 873, 1095, 1269
MfeI CAATTG 1 cut(s) 85
MhlI GDGCHC 3 cut(s) 337, 448, 988
MluCI AATT 6 cut(s) 85, 777, 804, 990, 1212, 1296
MlyI GAGTC 4 cut(s) 65, 193, 932, 1154
MnlI CCTC 8 cut(s) 179, 294, 673, 861, 885, 1083, 1107, 1299
Mph1103I ATGCAT 1 cut(s) 514
MseI TTAA 9 cut(s) 495, 528, 558, 567, 600, 897, 996, 1119, 1218
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 2 cut(s) 490, 1191
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 4 cut(s) 189, 393, 858, 1080
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 4 cut(s) 212, 849, 956, 1178
MvaI CCWGG 3 cut(s) 189, 858, 1080
MwoI GCNNNNNNNGC 4 cut(s) 351, 837, 1059, 1281
NciI CCSGG 1 cut(s) 393
NdeII GATC 2 cut(s) 749, 1003
NlaIII CATG 3 cut(s) 516, 983, 1205
NlaIV GGNNCC 5 cut(s) 7, 390, 447, 832, 1054
NmuCI GTSAC 2 cut(s) 28, 371
NsiI ATGCAT 1 cut(s) 514
PaeR7I CTCGAG 1 cut(s) 729
PagI TCATGA 1 cut(s) 1201
PciSI GCTCTTC 1 cut(s) 1282
PctI GAATGC 4 cut(s) 212, 849, 956, 1178
PfeI GAWTC 7 cut(s) 94, 656, 944, 1035, 1166, 1257, 1338
PflFI GACNNNGTC 1 cut(s) 377
PfoI TCCNGGA 2 cut(s) 856, 1078
PkrI GCNGC 4 cut(s) 353, 492, 968, 1190
PleI GAGTC 4 cut(s) 65, 192, 932, 1154
PpsI GAGTC 4 cut(s) 65, 192, 932, 1154
PshBI ATTAAT 3 cut(s) 528, 897, 1119
Psp6I CCWGG 3 cut(s) 187, 856, 1078
PspGI CCWGG 3 cut(s) 187, 856, 1078
PspN4I GGNNCC 5 cut(s) 7, 390, 447, 832, 1054
PspPI GGNCC 2 cut(s) 104, 389
PsyI GACNNNGTC 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 490
RsaI GTAC 4 cut(s) 223, 278, 437, 646
RsaNI GTAC 4 cut(s) 222, 277, 436, 645
RseI CAYNNNNRTG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 1282
SaqAI TTAA 9 cut(s) 495, 528, 558, 567, 600, 897, 996, 1119, 1218
SatI GCNGC 4 cut(s) 352, 491, 967, 1189
Sau3AI GATC 2 cut(s) 749, 1003
Sau96I GGNCC 2 cut(s) 104, 389
SchI GAGTC 4 cut(s) 65, 193, 932, 1154
ScrFI CCNGG 4 cut(s) 189, 393, 858, 1080
SduI GDGCHC 3 cut(s) 337, 448, 988
SfaNI GCATC 2 cut(s) 1195, 1300
Sfr274I CTCGAG 1 cut(s) 729
SinI GGWCC 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 566, 729
SmoI CTYRAG 2 cut(s) 566, 729
Sse9I AATT 6 cut(s) 85, 777, 804, 990, 1212, 1296
SsiI CCGC 1 cut(s) 1191
SspI AATATT 1 cut(s) 604
SspMI CTAG 6 cut(s) 369, 648, 759, 909, 1131, 1342
StyD4I CCNGG 4 cut(s) 187, 391, 856, 1078
StyI CCWWGG 2 cut(s) 280, 758
TaaI ACNGT 7 cut(s) 22, 377, 414, 934, 1001, 1156, 1223
TaqI TCGA 1 cut(s) 730
TasI AATT 6 cut(s) 85, 777, 804, 990, 1212, 1296
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 7 cut(s) 94, 656, 944, 1035, 1166, 1257, 1338
Tru1I TTAA 9 cut(s) 495, 528, 558, 567, 600, 897, 996, 1119, 1218
Tru9I TTAA 9 cut(s) 495, 528, 558, 567, 600, 897, 996, 1119, 1218
TscAI CASTG 6 cut(s) 135, 279, 697, 961, 1006, 1183
TseFI GTSAC 2 cut(s) 28, 371
TseI GCWGC 4 cut(s) 351, 490, 966, 1188
Tsp45I GTSAC 2 cut(s) 28, 371
TspDTI ATGAA 7 cut(s) 152, 213, 968, 1027, 1190, 1249, 1335
TspGWI ACGGA 1 cut(s) 1045
TspRI CASTG 6 cut(s) 135, 279, 697, 961, 1006, 1183
Tth111I GACNNNGTC 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 104
VspI ATTAAT 3 cut(s) 528, 897, 1119
XhoI CTCGAG 1 cut(s) 729
XmaJI CCTAGG 1 cut(s) 758
XspI CTAG 6 cut(s) 369, 648, 759, 909, 1131, 1342
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.