DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26170 AT5G56780 |
| fragaria_vesca | FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231 |
| malus_domestica | MD02G1075500.v1.1 MD02G1076000.v1.1 |
| prunus_persica | Prupe.7G212600_v2.0.a1 |
| pyrus_communis | pycom02g05960 pycom02g06030 |
| rosa_chinensis | RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041 |
| rosa_laevigata | RLG00000016361 RLG00000016362 |
| rosa_multiflora | Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00148580 Rroxscaffold_2G00148600 |
| rosa_rugosa | Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800 |
| rosa_samantha | Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300 |
| rosa_wichuraiana | Rw0G010360 Rw2G006880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 266 |
| AciI | CCGC | 1 cut(s) | 1191 |
| AclWI | GGATC | 1 cut(s) | 998 |
| AcuI | CTGAAG | 1 cut(s) | 296 |
| AcyI | GRCGYC | 1 cut(s) | 541 |
| AfaI | GTAC | 4 cut(s) | 223, 278, 437, 646 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 178, 857, 1079, 1301 |
| AflII | CTTAAG | 1 cut(s) | 566 |
| AgsI | TTSAA | 5 cut(s) | 40, 582, 656, 739, 1301 |
| AjnI | CCWGG | 3 cut(s) | 187, 856, 1078 |
| AluBI | AGCT | 7 cut(s) | 250, 290, 490, 616, 742, 1017, 1239 |
| AluI | AGCT | 7 cut(s) | 250, 290, 490, 616, 742, 1017, 1239 |
| Alw21I | GWGCWC | 2 cut(s) | 337, 988 |
| Alw26I | GTCTC | 1 cut(s) | 414 |
| AlwI | GGATC | 1 cut(s) | 998 |
| Ama87I | CYCGRG | 1 cut(s) | 729 |
| AoxI | GGCC | 2 cut(s) | 232, 389 |
| ApeKI | GCWGC | 4 cut(s) | 351, 490, 966, 1188 |
| AseI | ATTAAT | 3 cut(s) | 528, 897, 1119 |
| AspA2I | CCTAGG | 1 cut(s) | 758 |
| AspLEI | GCGC | 2 cut(s) | 60, 472 |
| AspS9I | GGNCC | 2 cut(s) | 104, 389 |
| AsuC2I | CCSGG | 1 cut(s) | 393 |
| AsuHPI | GGTGA | 2 cut(s) | 666, 836 |
| AvaI | CYCGRG | 1 cut(s) | 729 |
| AvaII | GGWCC | 1 cut(s) | 104 |
| AvrII | CCTAGG | 1 cut(s) | 758 |
| BanII | GRGCYC | 1 cut(s) | 448 |
| BbsI | GAAGAC | 1 cut(s) | 126 |
| Bbv12I | GWGCWC | 2 cut(s) | 337, 988 |
| BbvI | GCAGC | 4 cut(s) | 338, 477, 978, 1200 |
| BccI | CCATC | 5 cut(s) | 435, 565, 821, 1043, 1265 |
| BceAI | ACGGC | 1 cut(s) | 219 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 305, 339 |
| BciT130I | CCWGG | 3 cut(s) | 189, 858, 1080 |
| BcnI | CCSGG | 1 cut(s) | 393 |
| BcoDI | GTCTC | 1 cut(s) | 414 |
| BfaI | CTAG | 6 cut(s) | 369, 648, 759, 909, 1131, 1342 |
| BfrI | CTTAAG | 1 cut(s) | 566 |
| BisI | GCNGC | 4 cut(s) | 352, 491, 967, 1189 |
| BlnI | CCTAGG | 1 cut(s) | 758 |
| BlsI | GCNGC | 4 cut(s) | 353, 492, 968, 1190 |
| Bme1390I | CCNGG | 4 cut(s) | 189, 393, 858, 1080 |
| Bme18I | GGWCC | 1 cut(s) | 104 |
| BmeT110I | CYCGRG | 1 cut(s) | 729 |
| BmgT120I | GGNCC | 2 cut(s) | 104, 389 |
| BmiI | GGNNCC | 5 cut(s) | 7, 390, 447, 832, 1054 |
| BmrFI | CCNGG | 4 cut(s) | 189, 393, 858, 1080 |
| BmrI | ACTGGG | 2 cut(s) | 140, 266 |
| BmsI | GCATC | 2 cut(s) | 1195, 1300 |
| BmuI | ACTGGG | 2 cut(s) | 140, 266 |
| BpiI | GAAGAC | 1 cut(s) | 126 |
| BpuMI | CCSGG | 1 cut(s) | 393 |
| BsaHI | GRCGYC | 1 cut(s) | 541 |
| BsaJI | CCNNGG | 2 cut(s) | 280, 758 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 178, 857, 1079, 1301 |
| Bse1I | ACTGG | 8 cut(s) | 135, 229, 272, 364, 851, 1007, 1073, 1229 |
| Bse3DI | GCAATG | 2 cut(s) | 207, 352 |
| BseBI | CCWGG | 3 cut(s) | 189, 858, 1080 |
| BseDI | CCNNGG | 2 cut(s) | 280, 758 |
| BseGI | GGATG | 5 cut(s) | 364, 823, 894, 1116, 1291 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 178, 857, 1079, 1301 |
| BseMI | GCAATG | 2 cut(s) | 207, 352 |
| BseMII | CTCAG | 5 cut(s) | 396, 500, 803, 954, 1176 |
| BseNI | ACTGG | 8 cut(s) | 135, 229, 272, 364, 851, 1007, 1073, 1229 |
| BseXI | GCAGC | 4 cut(s) | 338, 477, 978, 1200 |
| BshFI | GGCC | 2 cut(s) | 234, 391 |
| BsiHKAI | GWGCWC | 2 cut(s) | 337, 988 |
| BsiHKCI | CYCGRG | 1 cut(s) | 729 |
| BsiSI | CCGG | 1 cut(s) | 392 |
| BslFI | GGGAC | 1 cut(s) | 254 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 178, 857, 1079, 1301 |
| BsmAI | GTCTC | 1 cut(s) | 414 |
| BsmFI | GGGAC | 1 cut(s) | 254 |
| BsmI | GAATGC | 4 cut(s) | 212, 849, 956, 1178 |
| BsnI | GGCC | 2 cut(s) | 234, 391 |
| BsoBI | CYCGRG | 1 cut(s) | 729 |
| Bsp1286I | GDGCHC | 3 cut(s) | 337, 448, 988 |
| Bsp1407I | TGTACA | 1 cut(s) | 435 |
| Bsp143I | GATC | 2 cut(s) | 749, 1003 |
| BspACI | CCGC | 1 cut(s) | 1191 |
| BspANI | GGCC | 2 cut(s) | 234, 391 |
| BspCNI | CTCAG | 5 cut(s) | 397, 499, 802, 953, 1175 |
| BspHI | TCATGA | 1 cut(s) | 1201 |
| BspLI | GGNNCC | 5 cut(s) | 7, 390, 447, 832, 1054 |
| BspPI | GGATC | 1 cut(s) | 998 |
| BspQI | GCTCTTC | 1 cut(s) | 1282 |
| BspTI | CTTAAG | 1 cut(s) | 566 |
| BsrDI | GCAATG | 2 cut(s) | 207, 352 |
| BsrGI | TGTACA | 1 cut(s) | 435 |
| BsrI | ACTGG | 8 cut(s) | 135, 229, 272, 364, 851, 1007, 1073, 1229 |
| BssECI | CCNNGG | 2 cut(s) | 280, 758 |
| BssMI | GATC | 2 cut(s) | 749, 1003 |
| BssNI | GRCGYC | 1 cut(s) | 541 |
| BssT1I | CCWWGG | 2 cut(s) | 280, 758 |
| Bst2UI | CCWGG | 3 cut(s) | 189, 858, 1080 |
| Bst4CI | ACNGT | 7 cut(s) | 22, 377, 414, 934, 1001, 1156, 1223 |
| Bst6I | CTCTTC | 2 cut(s) | 35, 1282 |
| BstACI | GRCGYC | 1 cut(s) | 541 |
| BstAFI | CTTAAG | 1 cut(s) | 566 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 351 |
| BstAUI | TGTACA | 1 cut(s) | 435 |
| BstC8I | GCNNGC | 3 cut(s) | 10, 56, 248 |
| BstDEI | CTNAG | 5 cut(s) | 405, 486, 789, 940, 1162 |
| BstF5I | GGATG | 5 cut(s) | 364, 823, 894, 1116, 1291 |
| BstHHI | GCGC | 2 cut(s) | 60, 472 |
| BstKTI | GATC | 2 cut(s) | 752, 1006 |
| BstMAI | GTCTC | 1 cut(s) | 414 |
| BstMBI | GATC | 2 cut(s) | 749, 1003 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 351, 837, 1059, 1281 |
| BstNI | CCWGG | 3 cut(s) | 189, 858, 1080 |
| BstSCI | CCNGG | 4 cut(s) | 187, 391, 856, 1078 |
| BstV1I | GCAGC | 4 cut(s) | 338, 477, 978, 1200 |
| BstV2I | GAAGAC | 1 cut(s) | 126 |
| BsuRI | GGCC | 2 cut(s) | 234, 391 |
| BtsCI | GGATG | 5 cut(s) | 364, 823, 894, 1116, 1291 |
| BtsI | GCAGTG | 2 cut(s) | 961, 1183 |
| BtsIMutI | CAGTG | 6 cut(s) | 128, 279, 697, 961, 1006, 1183 |
| Cac8I | GCNNGC | 3 cut(s) | 10, 56, 248 |
| CciI | TCATGA | 1 cut(s) | 1201 |
| CfoI | GCGC | 2 cut(s) | 60, 472 |
| Cfr13I | GGNCC | 2 cut(s) | 104, 389 |
| CseI | GACGC | 1 cut(s) | 549 |
| Csp6I | GTAC | 4 cut(s) | 222, 277, 436, 645 |
| CviAII | CATG | 3 cut(s) | 513, 980, 1202 |
| CviQI | GTAC | 4 cut(s) | 222, 277, 436, 645 |
| DdeI | CTNAG | 5 cut(s) | 405, 486, 789, 940, 1162 |
| DpnI | GATC | 2 cut(s) | 751, 1005 |
| DpnII | GATC | 2 cut(s) | 749, 1003 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 266 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 266 |
| Eam1104I | CTCTTC | 2 cut(s) | 35, 1282 |
| EarI | CTCTTC | 2 cut(s) | 35, 1282 |
| Eco130I | CCWWGG | 2 cut(s) | 280, 758 |
| Eco24I | GRGCYC | 1 cut(s) | 448 |
| Eco32I | GATATC | 2 cut(s) | 921, 1143 |
| Eco47I | GGWCC | 1 cut(s) | 104 |
| Eco57I | CTGAAG | 1 cut(s) | 296 |
| Eco88I | CYCGRG | 1 cut(s) | 729 |
| EcoRII | CCWGG | 3 cut(s) | 187, 856, 1078 |
| EcoRV | GATATC | 2 cut(s) | 921, 1143 |
| EcoT14I | CCWWGG | 2 cut(s) | 280, 758 |
| EcoT22I | ATGCAT | 1 cut(s) | 514 |
| EcoT38I | GRGCYC | 1 cut(s) | 448 |
| ErhI | CCWWGG | 2 cut(s) | 280, 758 |
| FaeI | CATG | 3 cut(s) | 516, 983, 1205 |
| FaqI | GGGAC | 1 cut(s) | 254 |
| FatI | CATG | 3 cut(s) | 512, 979, 1201 |
| Fnu4HI | GCNGC | 4 cut(s) | 352, 491, 967, 1189 |
| FokI | GGATG | 5 cut(s) | 351, 830, 901, 1123, 1278 |
| FriOI | GRGCYC | 1 cut(s) | 448 |
| Fsp4HI | GCNGC | 4 cut(s) | 352, 491, 967, 1189 |
| FspBI | CTAG | 6 cut(s) | 369, 648, 759, 909, 1131, 1342 |
| GlaI | GCGC | 2 cut(s) | 59, 471 |
| GluI | GCNGC | 4 cut(s) | 352, 491, 967, 1189 |
| HaeIII | GGCC | 2 cut(s) | 234, 391 |
| HapII | CCGG | 1 cut(s) | 392 |
| HgaI | GACGC | 1 cut(s) | 549 |
| HhaI | GCGC | 2 cut(s) | 60, 472 |
| Hin1I | GRCGYC | 1 cut(s) | 541 |
| Hin1II | CATG | 3 cut(s) | 516, 983, 1205 |
| Hin6I | GCGC | 2 cut(s) | 58, 470 |
| HinP1I | GCGC | 2 cut(s) | 58, 470 |
| HincII | GTYRAC | 4 cut(s) | 906, 937, 1128, 1159 |
| HindII | GTYRAC | 4 cut(s) | 906, 937, 1128, 1159 |
| HindIII | AAGCTT | 3 cut(s) | 248, 614, 740 |
| HpaII | CCGG | 1 cut(s) | 392 |
| HphI | GGTGA | 2 cut(s) | 666, 836 |
| Hpy166II | GTNNAC | 6 cut(s) | 277, 436, 906, 937, 1128, 1159 |
| Hpy188I | TCNGA | 6 cut(s) | 112, 633, 943, 949, 1165, 1171 |
| Hpy188III | TCNNGA | 4 cut(s) | 417, 729, 791, 1202 |
| Hpy8I | GTNNAC | 6 cut(s) | 277, 436, 906, 937, 1128, 1159 |
| HpyAV | CCTTC | 3 cut(s) | 117, 134, 1281 |
| HpyCH4III | ACNGT | 7 cut(s) | 22, 377, 414, 934, 1001, 1156, 1223 |
| HpyCH4V | TGCA | 8 cut(s) | 54, 212, 512, 840, 954, 1062, 1176, 1284 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 351, 837, 1059, 1281 |
| HpyF3I | CTNAG | 5 cut(s) | 405, 486, 789, 940, 1162 |
| Hsp92I | GRCGYC | 1 cut(s) | 541 |
| Hsp92II | CATG | 3 cut(s) | 516, 983, 1205 |
| HspAI | GCGC | 2 cut(s) | 58, 470 |
| Kzo9I | GATC | 2 cut(s) | 749, 1003 |
| LguI | GCTCTTC | 1 cut(s) | 1282 |
| LmnI | GCTCC | 4 cut(s) | 5, 451, 836, 1058 |
| Lsp1109I | GCAGC | 4 cut(s) | 338, 477, 978, 1200 |
| LweI | GCATC | 2 cut(s) | 1195, 1300 |
| MaeI | CTAG | 6 cut(s) | 369, 648, 759, 909, 1131, 1342 |
| MaeIII | GTNAC | 2 cut(s) | 28, 371 |
| MalI | GATC | 2 cut(s) | 751, 1005 |
| MboI | GATC | 2 cut(s) | 749, 1003 |
| MboII | GAAGA | 9 cut(s) | 52, 59, 103, 131, 570, 646, 873, 1095, 1269 |
| MfeI | CAATTG | 1 cut(s) | 85 |
| MhlI | GDGCHC | 3 cut(s) | 337, 448, 988 |
| MluCI | AATT | 6 cut(s) | 85, 777, 804, 990, 1212, 1296 |
| MlyI | GAGTC | 4 cut(s) | 65, 193, 932, 1154 |
| MnlI | CCTC | 8 cut(s) | 179, 294, 673, 861, 885, 1083, 1107, 1299 |
| Mph1103I | ATGCAT | 1 cut(s) | 514 |
| MseI | TTAA | 9 cut(s) | 495, 528, 558, 567, 600, 897, 996, 1119, 1218 |
| MslI | CAYNNNNRTG | 1 cut(s) | 369 |
| MspA1I | CMGCKG | 2 cut(s) | 490, 1191 |
| MspCI | CTTAAG | 1 cut(s) | 566 |
| MspI | CCGG | 1 cut(s) | 392 |
| MspR9I | CCNGG | 4 cut(s) | 189, 393, 858, 1080 |
| MunI | CAATTG | 1 cut(s) | 85 |
| Mva1269I | GAATGC | 4 cut(s) | 212, 849, 956, 1178 |
| MvaI | CCWGG | 3 cut(s) | 189, 858, 1080 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 351, 837, 1059, 1281 |
| NciI | CCSGG | 1 cut(s) | 393 |
| NdeII | GATC | 2 cut(s) | 749, 1003 |
| NlaIII | CATG | 3 cut(s) | 516, 983, 1205 |
| NlaIV | GGNNCC | 5 cut(s) | 7, 390, 447, 832, 1054 |
| NmuCI | GTSAC | 2 cut(s) | 28, 371 |
| NsiI | ATGCAT | 1 cut(s) | 514 |
| PaeR7I | CTCGAG | 1 cut(s) | 729 |
| PagI | TCATGA | 1 cut(s) | 1201 |
| PciSI | GCTCTTC | 1 cut(s) | 1282 |
| PctI | GAATGC | 4 cut(s) | 212, 849, 956, 1178 |
| PfeI | GAWTC | 7 cut(s) | 94, 656, 944, 1035, 1166, 1257, 1338 |
| PflFI | GACNNNGTC | 1 cut(s) | 377 |
| PfoI | TCCNGGA | 2 cut(s) | 856, 1078 |
| PkrI | GCNGC | 4 cut(s) | 353, 492, 968, 1190 |
| PleI | GAGTC | 4 cut(s) | 65, 192, 932, 1154 |
| PpsI | GAGTC | 4 cut(s) | 65, 192, 932, 1154 |
| PshBI | ATTAAT | 3 cut(s) | 528, 897, 1119 |
| Psp6I | CCWGG | 3 cut(s) | 187, 856, 1078 |
| PspGI | CCWGG | 3 cut(s) | 187, 856, 1078 |
| PspN4I | GGNNCC | 5 cut(s) | 7, 390, 447, 832, 1054 |
| PspPI | GGNCC | 2 cut(s) | 104, 389 |
| PsyI | GACNNNGTC | 1 cut(s) | 377 |
| PvuII | CAGCTG | 1 cut(s) | 490 |
| RsaI | GTAC | 4 cut(s) | 223, 278, 437, 646 |
| RsaNI | GTAC | 4 cut(s) | 222, 277, 436, 645 |
| RseI | CAYNNNNRTG | 1 cut(s) | 369 |
| SapI | GCTCTTC | 1 cut(s) | 1282 |
| SaqAI | TTAA | 9 cut(s) | 495, 528, 558, 567, 600, 897, 996, 1119, 1218 |
| SatI | GCNGC | 4 cut(s) | 352, 491, 967, 1189 |
| Sau3AI | GATC | 2 cut(s) | 749, 1003 |
| Sau96I | GGNCC | 2 cut(s) | 104, 389 |
| SchI | GAGTC | 4 cut(s) | 65, 193, 932, 1154 |
| ScrFI | CCNGG | 4 cut(s) | 189, 393, 858, 1080 |
| SduI | GDGCHC | 3 cut(s) | 337, 448, 988 |
| SfaNI | GCATC | 2 cut(s) | 1195, 1300 |
| Sfr274I | CTCGAG | 1 cut(s) | 729 |
| SinI | GGWCC | 1 cut(s) | 104 |
| SlaI | CTCGAG | 1 cut(s) | 729 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 369 |
| SmlI | CTYRAG | 2 cut(s) | 566, 729 |
| SmoI | CTYRAG | 2 cut(s) | 566, 729 |
| Sse9I | AATT | 6 cut(s) | 85, 777, 804, 990, 1212, 1296 |
| SsiI | CCGC | 1 cut(s) | 1191 |
| SspI | AATATT | 1 cut(s) | 604 |
| SspMI | CTAG | 6 cut(s) | 369, 648, 759, 909, 1131, 1342 |
| StyD4I | CCNGG | 4 cut(s) | 187, 391, 856, 1078 |
| StyI | CCWWGG | 2 cut(s) | 280, 758 |
| TaaI | ACNGT | 7 cut(s) | 22, 377, 414, 934, 1001, 1156, 1223 |
| TaqI | TCGA | 1 cut(s) | 730 |
| TasI | AATT | 6 cut(s) | 85, 777, 804, 990, 1212, 1296 |
| TatI | WGTACW | 1 cut(s) | 435 |
| TfiI | GAWTC | 7 cut(s) | 94, 656, 944, 1035, 1166, 1257, 1338 |
| Tru1I | TTAA | 9 cut(s) | 495, 528, 558, 567, 600, 897, 996, 1119, 1218 |
| Tru9I | TTAA | 9 cut(s) | 495, 528, 558, 567, 600, 897, 996, 1119, 1218 |
| TscAI | CASTG | 6 cut(s) | 135, 279, 697, 961, 1006, 1183 |
| TseFI | GTSAC | 2 cut(s) | 28, 371 |
| TseI | GCWGC | 4 cut(s) | 351, 490, 966, 1188 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 371 |
| TspDTI | ATGAA | 7 cut(s) | 152, 213, 968, 1027, 1190, 1249, 1335 |
| TspGWI | ACGGA | 1 cut(s) | 1045 |
| TspRI | CASTG | 6 cut(s) | 135, 279, 697, 961, 1006, 1183 |
| Tth111I | GACNNNGTC | 1 cut(s) | 377 |
| Vha464I | CTTAAG | 1 cut(s) | 566 |
| VpaK11BI | GGWCC | 1 cut(s) | 104 |
| VspI | ATTAAT | 3 cut(s) | 528, 897, 1119 |
| XhoI | CTCGAG | 1 cut(s) | 729 |
| XmaJI | CCTAGG | 1 cut(s) | 758 |
| XspI | CTAG | 6 cut(s) | 369, 648, 759, 909, 1131, 1342 |
| Zsp2I | ATGCAT | 1 cut(s) | 514 |