Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308583.1

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 784

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggaaccaaaagtgaggccctgaaaacagaaagtcagctgcttaacacatttgattatgcatggaacacaagcatcaatggtgcacgtcgccctgatgatgtccttcagaaactcaagaaaatttcctcaaaacctacccgatttactaatattgtccagcggcttcaacctttcagacagaagcaagttggtattagaattaactccagcaaactggtttcaacagaggacaagttcagtgaccatgctgatagggagagccggactctcatagcccaggttttcaagtttggcagatcacaccctaggttagttttggatagaagtgggattactcaggaaaatactataatttgtggggtggctgtaggtgatgggtccatctgtagaaaggaaccagttcaaggaagaaagtggtgtgctgaacacaaagggatgaggattacagggtcgattacagttaggatatcaaatagcaatattgattcaaagtgcagtgttatcagcaacagagaatttgtttcatatgaaagtgggattactcaggagaacactgaaatttgtggggtggctgcaggtgatgggtctaaatgtagaacaccaccagttcaaggaagaaagaggtgtgctgagcacaaagggatgaggattaaagggtcaattacagttgggatatcagataagaatgtggactcaaaatgcagtgttctgaacaacacagagcttgatagtcatgatgcatcaaatgtgaaatatgaaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.26

Weight (kDa)

9.51

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
AciI	CCGC	1 cut(s)	163
AcsI	RAATTY	3 cut(s)	123, 518, 561
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	407, 614
AgsI	TTSAA	6 cut(s)	170, 225, 289, 407, 492, 614
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	40, 727
AluI	AGCT	2 cut(s)	40, 727
Alw21I	GWGCWC	2 cut(s)	88, 639
Alw44I	GTGCAC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	40, 575
ApoI	RAATTY	3 cut(s)	123, 518, 561
Asp700I	GAANNNNTTC	1 cut(s)	402
AspA2I	CCTAGG	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	19, 381
AsuHPI	GGTGA	2 cut(s)	386, 593
AvaII	GGWCC	1 cut(s)	381
AvrII	CCTAGG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	319, 351
Bbv12I	GWGCWC	2 cut(s)	88, 639
BbvI	GCAGC	2 cut(s)	27, 562
BccI	CCATC	3 cut(s)	371, 392, 578
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	3 cut(s)	369, 388, 576
BfuAI	ACCTGC	1 cut(s)	569
BisI	GCNGC	3 cut(s)	41, 164, 576
BlnI	CCTAGG	1 cut(s)	308
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	3 cut(s)	42, 165, 577
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	19, 381
BmiI	GGNNCC	3 cut(s)	7, 382, 399
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	3 cut(s)	84, 730, 752
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BpmI	CTGGAG	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	279, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 614
Bse1I	ACTGG	3 cut(s)	222, 401, 608
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	279, 308
BseGI	GGATG	2 cut(s)	444, 651
BseLI	CCNNNNNNNGG	2 cut(s)	407, 614
BseMII	CTCAG	3 cut(s)	353, 560, 624
BseNI	ACTGG	3 cut(s)	222, 401, 608
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	27, 562
BsgI	GTGCAG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	88, 639
BsiSI	CCGG	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	407, 614
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	88, 639
Bsp143I	GATC	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	352, 559, 625
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	3 cut(s)	7, 382, 399
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	569
BsrI	ACTGG	3 cut(s)	222, 401, 608
BssECI	CCNNGG	2 cut(s)	279, 308
BssMI	GATC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	463, 670
BstDEI	CTNAG	3 cut(s)	339, 546, 633
BstF5I	GGATG	2 cut(s)	444, 651
BstKTI	GATC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	3 cut(s)	369, 388, 576
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	27, 562
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	444, 651
BtsI	GCAGTG	2 cut(s)	505, 712
BtsIMutI	CAGTG	4 cut(s)	247, 505, 555, 712
BveI	ACCTGC	1 cut(s)	569
CciI	TCATGA	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	19, 381
CviAII	CATG	3 cut(s)	63, 248, 737
CviJI	RGCY	8 cut(s)	20, 40, 166, 264, 278, 368, 575, 727
CviKI_1	RGCY	8 cut(s)	20, 40, 166, 264, 278, 368, 575, 727
DdeI	CTNAG	3 cut(s)	339, 546, 633
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	308
Eco32I	GATATC	2 cut(s)	471, 678
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	2 cut(s)	471, 678
EcoT14I	CCWWGG	1 cut(s)	308
EcoT22I	ATGCAT	2 cut(s)	64, 745
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	66, 251, 740
FaiI	YATR	9 cut(s)	60, 64, 249, 275, 353, 529, 531, 738, 759
FatI	CATG	3 cut(s)	62, 247, 736
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	41, 164, 576
FokI	GGATG	2 cut(s)	451, 658
Fsp4HI	GCNGC	3 cut(s)	41, 164, 576
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	41, 164, 576
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	3 cut(s)	66, 251, 740
HinfI	GANTC	3 cut(s)	268, 488, 695
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	386, 593
Hpy166II	GTNNAC	2 cut(s)	86, 694
Hpy188I	TCNGA	4 cut(s)	111, 179, 682, 714
Hpy188III	TCNNGA	4 cut(s)	118, 341, 548, 737
Hpy8I	GTNNAC	2 cut(s)	86, 694
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	463, 670
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	62, 86, 498, 578, 705, 743
HpyF3I	CTNAG	3 cut(s)	339, 546, 633
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	66, 251, 740
Kzo9I	GATC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	27, 562
LweI	GCATC	3 cut(s)	84, 730, 752
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	423, 630
MhlI	GDGCHC	2 cut(s)	88, 639
MluCI	AATT	6 cut(s)	123, 201, 354, 518, 561, 663
MlyI	GAGTC	2 cut(s)	262, 689
MnlI	CCTC	6 cut(s)	10, 139, 223, 435, 618, 642
Mph1103I	ATGCAT	2 cut(s)	64, 745
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	3 cut(s)	45, 204, 654
MspA1I	CMGCKG	2 cut(s)	40, 163
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	66, 251, 740
NlaIV	GGNNCC	3 cut(s)	7, 382, 399
NmuCI	GTSAC	1 cut(s)	242
NsiI	ATGCAT	2 cut(s)	64, 745
PagI	TCATGA	1 cut(s)	736
PaqCI	CACCTGC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	42, 165, 577
PleI	GAGTC	2 cut(s)	262, 689
PpsI	GAGTC	2 cut(s)	262, 689
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	7, 382, 399
PspPI	GGNCC	2 cut(s)	19, 381
PstI	CTGCAG	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	45, 204, 654
SatI	GCNGC	3 cut(s)	41, 164, 576
Sau3AI	GATC	1 cut(s)	299
Sau96I	GGNCC	2 cut(s)	19, 381
SchI	GAGTC	2 cut(s)	262, 689
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	88, 639
SfaNI	GCATC	3 cut(s)	84, 730, 752
SfcI	CTRYAG	3 cut(s)	369, 388, 576
SinI	GGWCC	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	6 cut(s)	123, 201, 354, 518, 561, 663
SsiI	CCGC	1 cut(s)	163
SspI	AATATT	2 cut(s)	154, 484
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	463, 670
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	455
TasI	AATT	6 cut(s)	123, 201, 354, 518, 561, 663
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	45, 204, 654
Tru9I	TTAA	3 cut(s)	45, 204, 654
TscAI	CASTG	4 cut(s)	247, 505, 562, 712
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	2 cut(s)	40, 575
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	516, 546
TspRI	CASTG	4 cut(s)	247, 505, 562, 712
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	3 cut(s)	123, 518, 561
XmaJI	CCTAGG	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	2 cut(s)	64, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.