Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Reverse (-)

6022400 .. 6023300

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1076000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTAGCCGGCAATTCGACCGTTGCCGTGTCAAGGTTGAAGAGGGAAGATTGCAAGCGCACCAAACACGACTCTCACTTCTCCAATTGGAAGATTCTGGTTGGCCCTTCTGATTGGGAGGACCATTCGCTGGGCAAAGAAGGAGCTGAAAGATACAGAGTTCATAACCTCCCCAAAAAGGAGAGTCCTGGTGTCTATGAACTCGGGATTTCCGTTTCGCGCACCGGTCTAGGCCGTGAGATTGGGAAGCTTAACCCGGACTACATAGTCCCGGTGTACCTTGGACAAGCTGATAATGTGAGGACACGGCTTCAGCAATATGGTCGTTCAGGTGCTCATTTGGGCAATGGCAGCTTAACTGGTCACCCTACTGACTGTGTCCGGAAGGAAAAGGGGCCTGGATTATTTGTGGAGATACTGTCAAGAGGCTACCCCATTGTGTATAGATGGGCTCCTGTAAGTGTATCTCAATCCTGTTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.89

Weight (kDa)

9.45

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY_YIG_domain	PF19239	27 - 155	2.7e-57	GIY-YIG domain-containing protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccII	CGCG	1 cut(s)	220
AccIII	TCCGGA	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	33, 130, 178
AgeI	ACCGGT	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	187, 397
AluBI	AGCT	4 cut(s)	146, 250, 290, 354
AluI	AGCT	4 cut(s)	146, 250, 290, 354
Alw21I	GWGCWC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	381
AoxI	GGCC	3 cut(s)	103, 232, 395
ApeKI	GCWGC	1 cut(s)	351
AsiGI	ACCGGT	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	60, 222
AspS9I	GGNCC	3 cut(s)	104, 121, 395
AsuC2I	CCSGG	2 cut(s)	257, 272
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	1 cut(s)	441
BceAI	ACGGC	3 cut(s)	11, 219, 323
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	189, 399
BcnI	CCSGG	2 cut(s)	257, 272
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	4 cut(s)	189, 257, 272, 399
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	104, 121, 395
BmiI	GGNNCC	2 cut(s)	396, 453
BmrFI	CCNGG	4 cut(s)	189, 257, 272, 399
BpuMI	CCSGG	2 cut(s)	257, 272
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	2 cut(s)	224, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 130, 178
Bse118I	RCCGGY	2 cut(s)	8, 224
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	189, 399
BseDI	CCNNGG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	33, 130, 178
BseMI	GCAATG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	105, 234, 397
BshTI	ACCGGT	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	5 cut(s)	9, 225, 257, 272, 382
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	33, 130, 178
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	105, 234, 397
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	337, 454
Bsp13I	TCCGGA	1 cut(s)	381
BspANI	GGCC	3 cut(s)	105, 234, 397
BspEI	TCCGGA	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	396, 453
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	2 cut(s)	8, 224
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	2 cut(s)	8, 224
BssECI	CCNNGG	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	189, 399
Bst4CI	ACNGT	3 cut(s)	22, 377, 420
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	10, 56
BstEII	GGTNACC	1 cut(s)	362
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	2 cut(s)	60, 222
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstNI	CCWGG	2 cut(s)	189, 399
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	4 cut(s)	187, 255, 270, 397
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	105, 234, 397
Cac8I	GCNNGC	2 cut(s)	10, 56
CfoI	GCGC	2 cut(s)	60, 222
Cfr10I	RCCGGY	2 cut(s)	8, 224
Cfr13I	GGNCC	3 cut(s)	104, 121, 395
Csp6I	GTAC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	224
CviQI	GTAC	1 cut(s)	277
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	395
EcoO65I	GGTNACC	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	187, 397
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	280
FaiI	YATR	6 cut(s)	165, 198, 266, 321, 444, 484
FaqI	GGGAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	59, 221
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	105, 234, 397
HapII	CCGG	5 cut(s)	9, 225, 257, 272, 382
HhaI	GCGC	2 cut(s)	60, 222
Hin6I	GCGC	2 cut(s)	58, 220
HinP1I	GCGC	2 cut(s)	58, 220
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	71, 94, 184
HpaII	CCGG	5 cut(s)	9, 225, 257, 272, 382
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	205, 382, 423
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	3 cut(s)	117, 134, 379
HpyCH4III	ACNGT	3 cut(s)	22, 377, 420
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HspAI	GCGC	2 cut(s)	58, 220
Kpn2I	TCCGGA	1 cut(s)	381
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	143, 457
Lsp1109I	GCAGC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	362
MboII	GAAGA	3 cut(s)	52, 59, 103
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	337, 454
MluCI	AATT	2 cut(s)	13, 85
MlyI	GAGTC	2 cut(s)	65, 193
MnlI	CCTC	5 cut(s)	36, 112, 179, 294, 419
MroI	TCCGGA	1 cut(s)	381
MroNI	GCCGGC	1 cut(s)	8
MseI	TTAA	2 cut(s)	252, 356
MspI	CCGG	5 cut(s)	9, 225, 257, 272, 382
MspR9I	CCNGG	4 cut(s)	189, 257, 272, 399
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	189, 399
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	351
NaeI	GCCGGC	1 cut(s)	10
NciI	CCSGG	2 cut(s)	257, 272
NgoMIV	GCCGGC	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	396, 453
NmuCI	GTSAC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	94
PflFI	GACNNNGTC	1 cut(s)	377
PflMI	CCANNNNNTGG	1 cut(s)	130
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	2 cut(s)	65, 192
PpsI	GAGTC	2 cut(s)	65, 192
Psp6I	CCWGG	2 cut(s)	187, 397
PspEI	GGTNACC	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	187, 397
PspN4I	GGNNCC	2 cut(s)	396, 453
PspPI	GGNCC	3 cut(s)	104, 121, 395
PsyI	GACNNNGTC	1 cut(s)	377
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	252, 356
SatI	GCNGC	1 cut(s)	352
Sau96I	GGNCC	3 cut(s)	104, 121, 395
SchI	GAGTC	2 cut(s)	65, 193
ScrFI	CCNGG	4 cut(s)	189, 257, 272, 399
SduI	GDGCHC	2 cut(s)	337, 454
SetI	ASST	8 cut(s)	38, 148, 171, 252, 282, 292, 334, 356
SinI	GGWCC	1 cut(s)	121
Sse9I	AATT	2 cut(s)	13, 85
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	4 cut(s)	187, 255, 270, 397
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	22, 377, 420
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	13, 85
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	252, 356
Tru9I	TTAA	2 cut(s)	252, 356
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	351
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	152, 213
TspGWI	ACGGA	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	121
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.