Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Reverse (-)

22964233 .. 22966398

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAATTCGGCGACGGCGTTTCCTTCGCCGTCGTCCCCACTGTCTTCAAAAGAGAAGACTACAAACGAACTAAACACGACACCGTCTTCTCCAAGTGGCAGGTACTTATAGGATCCAACGATTGGGAAGATTTCAAAAACGGAAAAGATGGTGTAGGTAGATACAGAGTCCAGAACTTACCTCGTAAATCTTGTCCGGGTCTGTATGAGCTCGGTGTAGCGGTCATCGGTCAAGAACAATGTCGAAAGCTTGAACCAGATATTGTTCTTGCTTCATATCTAGGACAAGCTGAAAGTGTTAGGTCTAGACTTCAGCGTTATGGAAGATCCGGTGCTCATTTGCGCAATGTTAACAACCTTAACGACTGTGAAACTATTGAATCTCCAGTTAAGGCTGTTACTGGAGGTTTATTTGAAGACATATTTTCGAAAGGAGGCTCGATTTTATACAGATGGGCTCCGATGGGATCTAAGAGAGAAGCTGAGGCAACAGAAGGGATGCTCTTGAGCACATTTGACTATGCTTGGAACAAAGGAAGTAACGGGGAGCGAAGGCAGCTTGATTTGCTTAAGAAGCTCGGTGATCGCGAGTTTATGAGCAAGAGAAAGTCCGGTATATCTCGAATGCTGTTTCCTTTTCTTCGGAACCAAGTTGGTATCAGAATAAAAGGAGAGAAGCATGTGCTTAAAGAAGAGAGGAAGCTAACCTGTGATGTTGATGAAGAGAAGAGTAATAATTTCCTCACTTCAATACTCAAACTCACCCGGTCTAGACCTCAACCGGTTTCAGACAGATTTGATGAGGTTGATGGTTCTTGTTCTGATATTGTTTGTGGAGTCTTACTTGAAGATGGTGGCTGTTGCATTAGAAGTCCAGTCAAAGGGAGAAAGAGATGCATAGAGCATAAAGGACAGAGAGTTTGCCGTGTTTCACCCGAAAAACAGACACCGCCAAAGTCCGAGATTTTCACTGGACAAGATCATCACAATCATAAAGACTCTGATGTTGTGTGTGGAGTGATCTTACCTGACATGGAACCTTGCAATAAGAGACCTGTTCCTGGAAGAAAACGATGTGAGGATCATAAAGGCATGAGGATCAATGCTTTTCTTTTTCTTCTTAACCAAACTGACCGTGAGAAAACCGTCAAAGACGAGAAACCTGATCCCGAATCGCATACCGAGTCAATCGAAGAAGAAGCTTTGACTCGCTTCTGTGAAGCTACAACAAAGAATGGGTTACCTTGCACAAGAAGTTCTCCTAAAGGAAGCAAAAGGTGTTGGCAACATAAGGAGAAAACTTCCAGCGATACTTCGCCGGTATATTTTCAGCCAGAGGCAGCAAAAAACGTAGCTTGTGGAGTTAAATTAGGCAATGGATTGATCTGTGAGAGATCTCCGGTAAAAGGACGTAAGAGATGTGAAGAGCATAAGGGAATGAGAATCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

483

Amino Acids

54.59

Weight (kDa)

9.08

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY_YIG_domain	PF19239	30 - 189	8.4e-65	GIY-YIG domain-containing protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccII	CGCG	1 cut(s)	588
AciI	CCGC	2 cut(s)	221, 950
AclWI	GGATC	7 cut(s)	108, 121, 321, 475, 1089, 1106, 1160
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	4 cut(s)	123, 881, 1061, 1406
AflII	CTTAAG	1 cut(s)	569
AgeI	ACCGGT	1 cut(s)	781
AgsI	TTSAA	7 cut(s)	49, 136, 254, 380, 416, 750, 848
AjnI	CCWGG	1 cut(s)	1060
Alw21I	GWGCWC	3 cut(s)	213, 337, 512
Alw26I	GTCTC	1 cut(s)	1045
AlwI	GGATC	7 cut(s)	108, 121, 321, 475, 1089, 1106, 1160
ApeKI	GCWGC	2 cut(s)	556, 1340
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	903, 935
AsiGI	ACCGGT	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	345
AsuC2I	CCSGG	2 cut(s)	198, 766
AsuHPI	GGTGA	4 cut(s)	593, 754, 924, 1438
AsuII	TTCGAA	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	213, 460
BbsI	GAAGAC	4 cut(s)	37, 63, 79, 423
Bbv12I	GWGCWC	3 cut(s)	213, 337, 512
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	568, 1352
BccI	CCATC	5 cut(s)	143, 447, 457, 803, 845
BceAI	ACGGC	3 cut(s)	14, 31, 909
BciT130I	CCWGG	1 cut(s)	1062
BcnI	CCSGG	2 cut(s)	198, 766
BcoDI	GTCTC	1 cut(s)	1045
BfaI	CTAG	3 cut(s)	281, 306, 771
BfrI	CTTAAG	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	1394
BisI	GCNGC	2 cut(s)	557, 1341
BlsI	GCNGC	2 cut(s)	558, 1342
Bme1390I	CCNGG	3 cut(s)	198, 766, 1062
BmiI	GGNNCC	4 cut(s)	115, 459, 647, 1038
BmrFI	CCNGG	3 cut(s)	198, 766, 1062
BmsI	GCATC	2 cut(s)	489, 884
BpiI	GAAGAC	4 cut(s)	37, 63, 79, 423
BpmI	CTGGAG	2 cut(s)	369, 423
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	2 cut(s)	198, 766
BsaI	GGTCTC	1 cut(s)	1045
BsaWI	WCCGGW	4 cut(s)	329, 611, 781, 1399
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 881, 1061, 1406
Bse118I	RCCGGY	2 cut(s)	781, 1318
Bse1I	ACTGG	4 cut(s)	386, 406, 875, 976
Bse3DI	GCAATG	2 cut(s)	352, 1381
BseBI	CCWGG	1 cut(s)	1062
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	123, 881, 1061, 1406
BseMI	GCAATG	2 cut(s)	352, 1381
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	4 cut(s)	386, 406, 875, 976
BseXI	GCAGC	2 cut(s)	568, 1352
Bsh1236I	CGCG	1 cut(s)	588
BshTI	ACCGGT	1 cut(s)	781
BsiHKAI	GWGCWC	3 cut(s)	213, 337, 512
BsiSI	CCGG	7 cut(s)	197, 330, 612, 766, 782, 1319, 1400
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	4 cut(s)	123, 881, 1061, 1406
BsmAI	GTCTC	1 cut(s)	1045
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	630
Bso31I	GGTCTC	1 cut(s)	1045
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	4 cut(s)	213, 337, 460, 512
Bsp68I	TCGCGA	1 cut(s)	588
BspACI	CCGC	2 cut(s)	221, 950
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	588
BspLI	GGNNCC	4 cut(s)	115, 459, 647, 1038
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	7 cut(s)	108, 121, 321, 475, 1089, 1106, 1160
BspQI	GCTCTTC	1 cut(s)	1419
BspT104I	TTCGAA	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	1045
BsrDI	GCAATG	2 cut(s)	352, 1381
BsrFI	RCCGGY	2 cut(s)	781, 1318
BsrI	ACTGG	4 cut(s)	386, 406, 875, 976
BssAI	RCCGGY	2 cut(s)	781, 1318
Bst2UI	CCWGG	1 cut(s)	1062
Bst4CI	ACNGT	5 cut(s)	43, 85, 368, 1136, 1147
Bst6I	CTCTTC	4 cut(s)	687, 717, 722, 1419
BstAFI	CTTAAG	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	471, 483
BstEII	GGTNACC	1 cut(s)	1239
BstF5I	GGATG	1 cut(s)	504
BstFNI	CGCG	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	1045
BstMWI	GCNNNNNNNGC	3 cut(s)	556, 565, 574
BstNI	CCWGG	1 cut(s)	1062
BstNSI	RCATGY	1 cut(s)	683
BstPI	GGTNACC	1 cut(s)	1239
BstSCI	CCNGG	3 cut(s)	196, 764, 1060
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	568, 1352
BstV2I	GAAGAC	4 cut(s)	37, 63, 79, 423
BstX2I	RGATCY	4 cut(s)	113, 326, 467, 1394
BstYI	RGATCY	4 cut(s)	113, 326, 467, 1394
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	39, 969
BtuMI	TCGCGA	1 cut(s)	588
BveI	ACCTGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	2 cut(s)	781, 1318
Csp6I	GTAC	1 cut(s)	104
CspAI	ACCGGT	1 cut(s)	781
CviAII	CATG	3 cut(s)	680, 1033, 1093
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	471, 483
Eam1104I	CTCTTC	4 cut(s)	687, 717, 722, 1419
EarI	CTCTTC	4 cut(s)	687, 717, 722, 1419
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	213, 460
Eco31I	GGTCTC	1 cut(s)	1045
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	1239
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	1239
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	1060
EcoT22I	ATGCAT	1 cut(s)	899
EcoT38I	GRGCYC	2 cut(s)	213, 460
FaeI	CATG	3 cut(s)	683, 1036, 1096
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	679, 1032, 1092
Fnu4HI	GCNGC	2 cut(s)	557, 1341
FokI	GGATG	1 cut(s)	511
FriOI	GRGCYC	2 cut(s)	213, 460
Fsp4HI	GCNGC	2 cut(s)	557, 1341
FspBI	CTAG	3 cut(s)	281, 306, 771
FspI	TGCGCA	1 cut(s)	344
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	557, 1341
GsuI	CTGGAG	2 cut(s)	369, 423
HapII	CCGG	7 cut(s)	197, 330, 612, 766, 782, 1319, 1400
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	683, 1036, 1096
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	2 cut(s)	248, 1200
HinfI	GANTC	8 cut(s)	168, 380, 837, 998, 1172, 1184, 1207, 1443
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	7 cut(s)	197, 330, 612, 766, 782, 1319, 1400
HphI	GGTGA	4 cut(s)	593, 754, 924, 1438
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	7 cut(s)	462, 645, 662, 790, 823, 961, 1003
Hpy188III	TCNNGA	8 cut(s)	172, 233, 306, 505, 587, 621, 771, 1169
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	17, 35
HpyAV	CCTTC	3 cut(s)	34, 488, 546
HpyCH4III	ACNGT	5 cut(s)	43, 85, 368, 1136, 1147
HpyCH4IV	ACGT	2 cut(s)	1350, 1411
HpyCH4V	TGCA	4 cut(s)	864, 897, 1044, 1248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	556, 565, 574
HpyF3I	CTNAG	2 cut(s)	471, 483
HpySE526I	ACGT	2 cut(s)	1350, 1411
Hsp92II	CATG	3 cut(s)	683, 1036, 1096
HspAI	GCGC	1 cut(s)	343
KspAI	GTTAAC	1 cut(s)	352
LguI	GCTCTTC	1 cut(s)	1419
LmnI	GCTCC	2 cut(s)	463, 547
Lsp1109I	GCAGC	2 cut(s)	568, 1352
LweI	GCATC	2 cut(s)	489, 884
MaeI	CTAG	3 cut(s)	281, 306, 771
MaeII	ACGT	2 cut(s)	1350, 1411
MaeIII	GTNAC	3 cut(s)	397, 539, 1239
MflI	RGATCY	4 cut(s)	113, 326, 467, 1394
MhlI	GDGCHC	4 cut(s)	213, 337, 460, 512
MluCI	AATT	3 cut(s)	5, 736, 1367
MlyI	GAGTC	5 cut(s)	177, 846, 992, 1193, 1201
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	899
MseI	TTAA	7 cut(s)	351, 360, 390, 570, 687, 1122, 1365
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	7 cut(s)	197, 330, 612, 766, 782, 1319, 1400
MspR9I	CCNGG	3 cut(s)	198, 766, 1062
Mva1269I	GAATGC	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	1062
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	3 cut(s)	556, 565, 574
NciI	CCSGG	2 cut(s)	198, 766
NlaIII	CATG	3 cut(s)	683, 1036, 1096
NlaIV	GGNNCC	4 cut(s)	115, 459, 647, 1038
NruI	TCGCGA	1 cut(s)	588
NsbI	TGCGCA	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	899
NspI	RCATGY	1 cut(s)	683
NspV	TTCGAA	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	1419
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 585
PctI	GAATGC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	380, 1172, 1443
PflFI	GACNNNGTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	1060
PinAI	ACCGGT	1 cut(s)	781
PkrI	GCNGC	2 cut(s)	558, 1342
PleI	GAGTC	5 cut(s)	176, 845, 992, 1192, 1201
PpsI	GAGTC	5 cut(s)	176, 845, 992, 1192, 1201
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	1060
PspEI	GGTNACC	1 cut(s)	1239
PspGI	CCWGG	1 cut(s)	1060
PspN4I	GGNNCC	4 cut(s)	115, 459, 647, 1038
PsuI	RGATCY	4 cut(s)	113, 326, 467, 1394
PsyI	GACNNNGTC	1 cut(s)	83
RruI	TCGCGA	1 cut(s)	588
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	1419
SaqAI	TTAA	7 cut(s)	351, 360, 390, 570, 687, 1122, 1365
SatI	GCNGC	2 cut(s)	557, 1341
SchI	GAGTC	5 cut(s)	177, 846, 992, 1193, 1201
ScrFI	CCNGG	3 cut(s)	198, 766, 1062
SduI	GDGCHC	4 cut(s)	213, 337, 460, 512
SfaNI	GCATC	2 cut(s)	489, 884
SfuI	TTCGAA	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	505, 569
SmoI	CTYRAG	2 cut(s)	505, 569
Sse9I	AATT	3 cut(s)	5, 736, 1367
SsiI	CCGC	2 cut(s)	221, 950
SspMI	CTAG	3 cut(s)	281, 306, 771
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	196, 764, 1060
TaaI	ACNGT	5 cut(s)	43, 85, 368, 1136, 1147
TaiI	ACGT	2 cut(s)	1353, 1414
TaqI	TCGA	5 cut(s)	244, 428, 440, 622, 1191
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	3 cut(s)	5, 736, 1367
TfiI	GAWTC	3 cut(s)	380, 1172, 1443
Tru1I	TTAA	7 cut(s)	351, 360, 390, 570, 687, 1122, 1365
Tru9I	TTAA	7 cut(s)	351, 360, 390, 570, 687, 1122, 1365
TscAI	CASTG	2 cut(s)	46, 976
TseI	GCWGC	2 cut(s)	556, 1340
TspDTI	ATGAA	2 cut(s)	264, 735
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	46, 976
Tth111I	GACNNNGTC	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	569
XapI	RAATTY	1 cut(s)	5
XbaI	TCTAGA	2 cut(s)	305, 770
XceI	RCATGY	1 cut(s)	683
XspI	CTAG	3 cut(s)	281, 306, 771
Zsp2I	ATGCAT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.