Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Forward (+)

3825070 .. 3825906

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07231.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTGCAGGGCACCCTGATGATGTCCTTCAGAGACTCAAGAAAATTTCCTCAAAACCTCCGCGATTTACTGATATTATCTAGAGGCTTCTACCTTTCAGACAGAAGCAAGTTGGCAACACCACCAGTTCAAGGAAGAAAGAGATGTGCTGAACACAAAGGGATGAGGATTAAAGCCTCAATTACAGTCAGGATATCAGATAATAATGTGGACTCAAAGTGCAGTGTTCTCAGCAACAAAGAGCTTGATAGTCATGATGCATCAAATGTGAAGTTTGAAACAGTGGAGTTTCATGTTAGTGAGAGCTCTACATTGATTTTTGGATTCATCTTGCCTGATGGCTCTCGTTGTAGGACAGAACCAATTCAAGGAAGAAAAAGGTGTGATGAGCACAAAGGGAGAAGGATCCAGAAATCCAACTCCAAGTCAGTGAAAGAAGAGGAGGTCGATATATGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.39

Weight (kDa)

9.47

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	400, 413
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	131, 368
AgsI	TTSAA	3 cut(s)	131, 278, 368
AluBI	AGCT	2 cut(s)	244, 306
AluI	AGCT	2 cut(s)	244, 306
Alw21I	GWGCWC	2 cut(s)	308, 393
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	400, 413
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	308, 393
BccI	CCATC	1 cut(s)	332
BcgI	CGANNNNNNTGC	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	13, 407
BmsI	GCATC	2 cut(s)	247, 269
BpuEI	CTTGAG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 368
Bse1I	ACTGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	131, 368
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	14
BsgI	GTGCAG	2 cut(s)	26, 241
Bsh1236I	CGCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	308, 393
BslI	CCNNNNNNNGG	2 cut(s)	131, 368
BsmAI	GTCTC	1 cut(s)	27
Bsp1286I	GDGCHC	3 cut(s)	14, 308, 393
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	13, 407
BspPI	GGATC	2 cut(s)	400, 413
BspT107I	GGYRCC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	187, 283
Bst6I	CTCTTC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	3 cut(s)	229, 288, 435
CciI	TCATGA	1 cut(s)	253
CviAII	CATG	3 cut(s)	254, 293, 459
CviJI	RGCY	5 cut(s)	87, 176, 244, 306, 342
CviKI_1	RGCY	5 cut(s)	87, 176, 244, 306, 342
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	3 cut(s)	257, 296, 462
FaiI	YATR	5 cut(s)	255, 294, 452, 454, 460
FatI	CATG	3 cut(s)	253, 292, 458
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	81
Hin1II	CATG	3 cut(s)	257, 296, 462
HinfI	GANTC	3 cut(s)	35, 212, 324
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	32, 100, 199
Hpy188III	TCNNGA	5 cut(s)	39, 81, 190, 254, 409
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	37, 396
HpyCH4III	ACNGT	2 cut(s)	187, 283
HpyCH4V	TGCA	4 cut(s)	7, 222, 260, 458
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	257, 296, 462
Kzo9I	GATC	1 cut(s)	405
LpnPI	CCDG	5 cut(s)	29, 138, 175, 348, 422
LweI	GCATC	2 cut(s)	247, 269
MaeI	CTAG	1 cut(s)	81
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	3 cut(s)	147, 384, 449
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	3 cut(s)	14, 308, 393
MluCI	AATT	3 cut(s)	44, 180, 363
MlyI	GAGTC	2 cut(s)	29, 206
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	7 cut(s)	60, 68, 77, 159, 187, 433, 436
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	2 cut(s)	17, 297
MvnI	CGCG	1 cut(s)	63
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	3 cut(s)	257, 296, 462
NlaIV	GGNNCC	2 cut(s)	13, 407
NsiI	ATGCAT	1 cut(s)	262
PagI	TCATGA	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	324
PleI	GAGTC	2 cut(s)	29, 206
PpsI	GAGTC	2 cut(s)	29, 206
Psp124BI	GAGCTC	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	13, 407
PsuI	RGATCY	1 cut(s)	405
RseI	CAYNNNNRTG	2 cut(s)	17, 297
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	405
SchI	GAGTC	2 cut(s)	29, 206
SduI	GDGCHC	3 cut(s)	14, 308, 393
SetI	ASST	6 cut(s)	60, 96, 246, 308, 383, 447
SfaNI	GCATC	2 cut(s)	247, 269
SmiMI	CAYNNNNRTG	2 cut(s)	17, 297
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	3 cut(s)	44, 180, 363
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	81
SstI	GAGCTC	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	187, 283
TaqI	TCGA	1 cut(s)	447
TasI	AATT	3 cut(s)	44, 180, 363
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	3 cut(s)	229, 288, 435
TspDTI	ATGAA	2 cut(s)	281, 316
TspRI	CASTG	3 cut(s)	229, 288, 435
XapI	RAATTY	1 cut(s)	44
XbaI	TCTAGA	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.