Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034350.1

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1813

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 881 bp

atgccgctaatactcgaactcgaagatgaagaacctccaatggtggcgggtcaagtcttgacccttgctgtccaaagtccaacgttgaagagggaagaacgcaagcgcttacagcacggcccccatttctccaaatggaaggttcttgttccgcctggcaaggatggagctgaaaggtacagagttcaaaacctgcctggaaacgagagtccaggagtgtatgaactcggagttgctgatccgcgcagtggttcaggccgtgggattaaagcggatcaaatagtcccggtttatgttggacaagctgatagtgcgaggacaaggcttcagcagtatggccggacaggggctcatttggggaggtcatgctcagggaatccgagtgagcaaatctgtaaggggcccggattgattgaggagatgctggaaagagggtactccattgtgtatagatgggctcctatgggaaccaaaagtgaggcggagagaacagaaagacagctgcttgacacacatgattatgcgtggaacacaaggatcaatggttcacggcgccgtgatgatgtccttcagaaactcaaggaaattccctcaaaacctactcgatttactaatattgtcccgaggcctctaccttccagacagaagcaagtcggtattagaattaactccagcaatctggtttcaacagaggacaagttcagtaactatgctgatagggagagcaggaatctcataccccaagttttcaagtctggcagatcacagcctaggttagttttggatggaagtgggattacttgggaagatactataatttgtggggtggctgttggtgatgggtccatatgtagaaaggcaccagttcaaggaagaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.65

Weight (kDa)

9.59

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccB1I	GGYRCC	2 cut(s)	552, 859
AccII	CGCG	1 cut(s)	244
AciI	CCGC	6 cut(s)	5, 47, 152, 242, 272, 482
AclI	AACGTT	1 cut(s)	83
AclWI	GGATC	3 cut(s)	233, 282, 545
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	2 cut(s)	311, 554
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	2 cut(s)	179, 437
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	248, 346, 869
AgsI	TTSAA	5 cut(s)	88, 188, 687, 751, 869
AjnI	CCWGG	3 cut(s)	154, 196, 211
AloI	GAACNNNNNNTCC	2 cut(s)	529, 561
AluBI	AGCT	3 cut(s)	170, 305, 502
AluI	AGCT	3 cut(s)	170, 305, 502
AlwI	GGATC	3 cut(s)	233, 282, 545
Ama87I	CYCGRG	1 cut(s)	622
Aor51HI	AGCGCT	1 cut(s)	107
AoxI	GGCC	5 cut(s)	118, 256, 337, 401, 626
ApaI	GGGCCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	585
AspA2I	CCTAGG	1 cut(s)	770
AspLEI	GCGC	3 cut(s)	108, 246, 555
AspS9I	GGNCC	4 cut(s)	119, 401, 402, 843
AsuC2I	CCSGG	2 cut(s)	287, 405
AsuHPI	GGTGA	1 cut(s)	848
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	843
AvrII	CCTAGG	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	405
BanI	GGYRCC	2 cut(s)	552, 859
BanII	GRGCYC	3 cut(s)	352, 405, 460
BarI	GAAGNNNNNNTAC	2 cut(s)	781, 813
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	4 cut(s)	158, 447, 779, 833
BceAI	ACGGC	4 cut(s)	133, 243, 540, 566
BciT130I	CCWGG	3 cut(s)	156, 198, 213
BcnI	CCSGG	2 cut(s)	287, 405
BfaI	CTAG	1 cut(s)	771
BfoI	RGCGCY	2 cut(s)	109, 556
BfuAI	ACCTGC	1 cut(s)	201
BisI	GCNGC	2 cut(s)	5, 503
BlnI	CCTAGG	1 cut(s)	770
BlsI	GCNGC	2 cut(s)	6, 504
Bme1390I	CCNGG	5 cut(s)	156, 198, 213, 287, 405
Bme18I	GGWCC	1 cut(s)	843
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	4 cut(s)	119, 401, 402, 843
BmiI	GGNNCC	8 cut(s)	121, 402, 403, 459, 469, 554, 844, 861
BmrFI	CCNGG	5 cut(s)	156, 198, 213, 287, 405
BmsI	GCATC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	655
Bpu10I	CCTNAGC	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	2 cut(s)	287, 405
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	3 cut(s)	259, 623, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 346, 869
Bse1I	ACTGG	1 cut(s)	863
BseBI	CCWGG	3 cut(s)	156, 198, 213
BseDI	CCNNGG	3 cut(s)	259, 623, 770
BseGI	GGATG	2 cut(s)	169, 790
BseLI	CCNNNNNNNGG	3 cut(s)	248, 346, 869
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	863
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	5 cut(s)	120, 258, 339, 403, 628
BshNI	GGYRCC	2 cut(s)	552, 859
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	3 cut(s)	287, 340, 405
BslFI	GGGAC	2 cut(s)	269, 605
BslI	CCNNNNNNNGG	3 cut(s)	248, 346, 869
BsmFI	GGGAC	2 cut(s)	269, 605
BsnI	GGCC	5 cut(s)	120, 258, 339, 403, 628
BsoBI	CYCGRG	1 cut(s)	622
Bsp120I	GGGCCC	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	352, 405, 460
Bsp143I	GATC	4 cut(s)	238, 274, 537, 761
BspACI	CCGC	6 cut(s)	5, 47, 152, 242, 272, 482
BspANI	GGCC	5 cut(s)	120, 258, 339, 403, 628
BspCNI	CTCAG	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	8 cut(s)	121, 402, 403, 459, 469, 554, 844, 861
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	233, 282, 545
BspT107I	GGYRCC	2 cut(s)	552, 859
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	3 cut(s)	259, 623, 770
BssMI	GATC	4 cut(s)	238, 274, 537, 761
BssNI	GRCGYC	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	3 cut(s)	156, 198, 213
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	169, 790
BstFNI	CGCG	1 cut(s)	244
BstH2I	RGCGCY	2 cut(s)	109, 556
BstHHI	GCGC	3 cut(s)	108, 246, 555
BstKTI	GATC	4 cut(s)	241, 277, 540, 764
BstMBI	GATC	4 cut(s)	238, 274, 537, 761
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 311
BstNI	CCWGG	3 cut(s)	156, 198, 213
BstSCI	CCNGG	5 cut(s)	154, 196, 211, 285, 403
BstSLI	GKGCMC	1 cut(s)	405
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	489
BstXI	CCANNNNNNTGG	1 cut(s)	679
BsuRI	GGCC	5 cut(s)	120, 258, 339, 403, 628
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	169, 790
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	104
CfoI	GCGC	3 cut(s)	108, 246, 555
Cfr13I	GGNCC	4 cut(s)	119, 401, 402, 843
Csp6I	GTAC	2 cut(s)	178, 436
CviAII	CATG	2 cut(s)	366, 515
CviQI	GTAC	2 cut(s)	178, 436
DdeI	CTNAG	1 cut(s)	370
DinI	GGCGCC	1 cut(s)	554
DpnI	GATC	4 cut(s)	240, 276, 539, 763
DpnII	GATC	4 cut(s)	238, 274, 537, 761
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	2 cut(s)	141, 497
Eco130I	CCWWGG	1 cut(s)	770
Eco147I	AGGCCT	1 cut(s)	628
Eco24I	GRGCYC	3 cut(s)	352, 405, 460
Eco47I	GGWCC	1 cut(s)	843
Eco47III	AGCGCT	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	311, 554
Eco88I	CYCGRG	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	3 cut(s)	154, 196, 211
EcoT14I	CCWWGG	1 cut(s)	770
EcoT38I	GRGCYC	3 cut(s)	352, 405, 460
EgeI	GGCGCC	1 cut(s)	554
EheI	GGCGCC	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	2 cut(s)	369, 518
FaqI	GGGAC	2 cut(s)	269, 605
FatI	CATG	2 cut(s)	365, 514
FauI	CCCGC	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	848
Fnu4HI	GCNGC	2 cut(s)	5, 503
FokI	GGATG	2 cut(s)	176, 797
FriOI	GRGCYC	3 cut(s)	352, 405, 460
Fsp4HI	GCNGC	2 cut(s)	5, 503
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	3 cut(s)	107, 245, 554
GluI	GCNGC	2 cut(s)	5, 503
GsuI	CTGGAG	1 cut(s)	655
HaeII	RGCGCY	2 cut(s)	109, 556
HaeIII	GGCC	5 cut(s)	120, 258, 339, 403, 628
HapII	CCGG	3 cut(s)	287, 340, 405
HhaI	GCGC	3 cut(s)	108, 246, 555
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	2 cut(s)	369, 518
Hin6I	GCGC	3 cut(s)	106, 244, 553
HinP1I	GCGC	3 cut(s)	106, 244, 553
HinfI	GANTC	3 cut(s)	208, 376, 730
HpaII	CCGG	3 cut(s)	287, 340, 405
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	3 cut(s)	230, 381, 573
Hpy188III	TCNNGA	3 cut(s)	58, 622, 639
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	3 cut(s)	133, 578, 645
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 311
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	369, 518
HspAI	GCGC	3 cut(s)	106, 244, 553
KasI	GGCGCC	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	238, 274, 537, 761
LmnI	GCTCC	2 cut(s)	167, 463
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	704
MalI	GATC	4 cut(s)	240, 276, 539, 763
MboI	GATC	4 cut(s)	238, 274, 537, 761
MboII	GAAGA	5 cut(s)	35, 41, 100, 107, 818
MhlI	GDGCHC	3 cut(s)	352, 405, 460
MluCI	AATT	3 cut(s)	585, 663, 816
Mly113I	GGCGCC	1 cut(s)	553
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	104, 277
MseI	TTAA	2 cut(s)	267, 666
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	3 cut(s)	287, 340, 405
MspR9I	CCNGG	5 cut(s)	156, 198, 213, 287, 405
MvaI	CCWGG	3 cut(s)	156, 198, 213
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	112, 311
NarI	GGCGCC	1 cut(s)	553
NciI	CCSGG	2 cut(s)	287, 405
NdeI	CATATG	1 cut(s)	848
NdeII	GATC	4 cut(s)	238, 274, 537, 761
NlaIII	CATG	2 cut(s)	369, 518
NlaIV	GGNNCC	8 cut(s)	121, 402, 403, 459, 469, 554, 844, 861
PceI	AGGCCT	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	376, 730
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	6, 504
PleI	GAGTC	1 cut(s)	216
PluTI	GGCGCC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	216
Psp1406I	AACGTT	1 cut(s)	83
Psp6I	CCWGG	3 cut(s)	154, 196, 211
PspGI	CCWGG	3 cut(s)	154, 196, 211
PspN4I	GGNNCC	8 cut(s)	121, 402, 403, 459, 469, 554, 844, 861
PspOMI	GGGCCC	1 cut(s)	401
PspPI	GGNCC	4 cut(s)	119, 401, 402, 843
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	2 cut(s)	179, 437
RsaNI	GTAC	2 cut(s)	178, 436
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	267, 666
SatI	GCNGC	2 cut(s)	5, 503
Sau3AI	GATC	4 cut(s)	238, 274, 537, 761
Sau96I	GGNCC	4 cut(s)	119, 401, 402, 843
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	5 cut(s)	156, 198, 213, 287, 405
SduI	GDGCHC	3 cut(s)	352, 405, 460
SfaNI	GCATC	1 cut(s)	411
SfoI	GGCGCC	1 cut(s)	554
SinI	GGWCC	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	3 cut(s)	585, 663, 816
SseBI	AGGCCT	1 cut(s)	628
SsiI	CCGC	6 cut(s)	5, 47, 152, 242, 272, 482
SspDI	GGCGCC	1 cut(s)	552
SspI	AATATT	1 cut(s)	616
SspMI	CTAG	1 cut(s)	771
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	5 cut(s)	154, 196, 211, 285, 403
StyI	CCWWGG	1 cut(s)	770
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	15, 21, 604
TasI	AATT	3 cut(s)	585, 663, 816
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	376, 730
Tru1I	TTAA	2 cut(s)	267, 666
Tru9I	TTAA	2 cut(s)	267, 666
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	42, 237
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	843
XapI	RAATTY	1 cut(s)	585
XmaJI	CCTAGG	1 cut(s)	770
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.