Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Reverse (-)

5999914 .. 6008541

Gene Structure 8628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1075500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGCCGGCAATTCGACCGTTGCCGCGTCAAGGTTGAAGAGGGAAGATTGCGAGCGCACCACAAACGACTCTCGCTTCTCCCCTTGGAAGTTGGAAAACCAAAGCGACGCACTGAAAACAGAAAATCGGCGGCTTGGTACATATAATTATGCATGGAATAGAAACAATAATGGAGCAAGGCGCCCTGATGATGTCCATCAAAAACTCAAGGAGATAACTTCCAGTCAGAAGAAAGTGGGCATCAGAATTGAGTCAAGCAAACCAATTTCAACGGGTGACAAATTCGGTGCTTATGATGACAAGGATATCGACAACTCCCCTTTTCAGGTCTTCAAGCTCAGCAGAGCACAGCCTAGGTTGGTTTCATATAGAAGCATTACTGAGGAGAATACTGGTATAATTTGTGGGGTGGATGTAGGAGATGGTTCTGTTTGCAGAACAACACCAGTTCCCGGAAGACAGAGGTGTGCTGAACACAAAGGGATGAGGATTAAGGGGTCAACCGGAGTTGGGATATCAAACAGCAATGTCGACTCACAGTGCGGCTTTATTAGCAACTATGATCCAGTAGAGTCTTGCATATTCATCTTGGCTGATGGATCATCTTGTCGAAGGCATCCTATTCAAGGGCGGAAAATGTGTTATCAGCATAAAGGGAGAAGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.95

Weight (kDa)

9.4

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY_YIG_domain	PF19239	31 - 66	2.4e-08	GIY-YIG domain-containing protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	29
AciI	CCGC	4 cut(s)	27, 133, 546, 634
AclWI	GGATC	2 cut(s)	560, 610
AcsI	RAATTY	2 cut(s)	284, 666
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	5 cut(s)	33, 328, 455, 513, 629
AgsI	TTSAA	4 cut(s)	40, 273, 337, 629
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw21I	GWGCWC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	560, 610
ApoI	RAATTY	2 cut(s)	284, 666
AspA2I	CCTAGG	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	60, 186
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	290
AvrII	CCTAGG	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	325, 466
Bbv12I	GWGCWC	1 cut(s)	352
BccI	CCATC	3 cut(s)	207, 419, 593
BcnI	CCSGG	1 cut(s)	456
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	3 cut(s)	27, 134, 547
BlnI	CCTAGG	1 cut(s)	356
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	3 cut(s)	28, 135, 548
Bme1390I	CCNGG	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	252, 628
BpiI	GAAGAC	2 cut(s)	325, 466
Bpu1102I	GCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	86, 356
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 328, 455, 513, 629
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	4 cut(s)	225, 400, 449, 569
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	86, 356
BseGI	GGATG	3 cut(s)	421, 492, 619
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	5 cut(s)	33, 328, 455, 513, 629
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	355, 375
BseNI	ACTGG	4 cut(s)	225, 400, 449, 569
BseRI	GAGGAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	9, 456, 507
BslI	CCNNNNNNNGG	5 cut(s)	33, 328, 455, 513, 629
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	565, 602
Bsp1720I	GCTNAGC	1 cut(s)	341
BspACI	CCGC	4 cut(s)	27, 133, 546, 634
BspCNI	CTCAG	2 cut(s)	354, 376
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	560, 610
BspT107I	GGYRCC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	4 cut(s)	225, 400, 449, 569
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	86, 356
BssMI	GATC	2 cut(s)	565, 602
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	86, 356
Bst4CI	ACNGT	2 cut(s)	22, 543
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	10, 56
BstDEI	CTNAG	2 cut(s)	341, 384
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	421, 492, 619
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	60, 186
BstKTI	GATC	2 cut(s)	568, 605
BstMBI	GATC	2 cut(s)	565, 602
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	454
BstUI	CGCG	1 cut(s)	29
BstV2I	GAAGAC	2 cut(s)	325, 466
BtsCI	GGATG	3 cut(s)	421, 492, 619
BtsIMutI	CAGTG	2 cut(s)	113, 548
Cac8I	GCNNGC	2 cut(s)	10, 56
CfoI	GCGC	2 cut(s)	60, 186
Cfr10I	RCCGGY	1 cut(s)	8
CseI	GACGC	2 cut(s)	18, 119
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	6 cut(s)	8, 136, 340, 355, 549, 596
CviKI_1	RGCY	6 cut(s)	8, 136, 340, 355, 549, 596
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	341, 384
DinI	GGCGCC	1 cut(s)	185
DpnI	GATC	2 cut(s)	567, 604
DpnII	GATC	2 cut(s)	565, 602
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	649
Eco130I	CCWWGG	2 cut(s)	86, 356
Eco32I	GATATC	2 cut(s)	310, 519
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRV	GATATC	2 cut(s)	310, 519
EcoT14I	CCWWGG	2 cut(s)	86, 356
EcoT22I	ATGCAT	1 cut(s)	157
EgeI	GGCGCC	1 cut(s)	185
EheI	GGCGCC	1 cut(s)	185
ErhI	CCWWGG	2 cut(s)	86, 356
FaeI	CATG	1 cut(s)	159
FatI	CATG	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	27, 134, 547
FokI	GGATG	3 cut(s)	428, 499, 606
Fsp4HI	GCNGC	3 cut(s)	27, 134, 547
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	2 cut(s)	59, 185
GluI	GCNGC	3 cut(s)	27, 134, 547
HaeII	RGCGCY	1 cut(s)	187
HapII	CCGG	3 cut(s)	9, 456, 507
HgaI	GACGC	2 cut(s)	18, 119
HhaI	GCGC	2 cut(s)	60, 186
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	159
Hin6I	GCGC	2 cut(s)	58, 184
HinP1I	GCGC	2 cut(s)	58, 184
HincII	GTYRAC	2 cut(s)	504, 535
HindII	GTYRAC	2 cut(s)	504, 535
HinfI	GANTC	4 cut(s)	71, 254, 536, 575
HpaII	CCGG	3 cut(s)	9, 456, 507
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	504, 535
Hpy188I	TCNGA	2 cut(s)	231, 248
Hpy8I	GTNNAC	2 cut(s)	504, 535
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	2 cut(s)	22, 543
HpyCH4V	TGCA	3 cut(s)	155, 438, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	2 cut(s)	341, 384
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	159
HspAI	GCGC	2 cut(s)	58, 184
KasI	GGCGCC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	565, 602
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	9 cut(s)	22, 201, 238, 314, 381, 462, 469, 520, 582
LweI	GCATC	2 cut(s)	252, 628
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	567, 604
MboI	GATC	2 cut(s)	565, 602
MboII	GAAGA	5 cut(s)	52, 59, 244, 325, 471
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	7 cut(s)	13, 148, 249, 267, 284, 402, 666
Mly113I	GGCGCC	1 cut(s)	184
MlyI	GAGTC	4 cut(s)	65, 263, 530, 584
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	36, 379, 459, 483
Mph1103I	ATGCAT	1 cut(s)	157
MroNI	GCCGGC	1 cut(s)	8
MseI	TTAA	1 cut(s)	495
MspI	CCGG	3 cut(s)	9, 456, 507
MspR9I	CCNGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	555
NaeI	GCCGGC	1 cut(s)	10
NarI	GGCGCC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	2 cut(s)	565, 602
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	28, 135, 548
PleI	GAGTC	4 cut(s)	65, 262, 530, 583
PluTI	GGCGCC	1 cut(s)	187
PpsI	GAGTC	4 cut(s)	65, 262, 530, 583
PspN4I	GGNNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	27, 134, 547
Sau3AI	GATC	2 cut(s)	565, 602
SchI	GAGTC	4 cut(s)	65, 263, 530, 584
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	5 cut(s)	38, 333, 342, 362, 470
SfaNI	GCATC	2 cut(s)	252, 628
SfoI	GGCGCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	7 cut(s)	13, 148, 249, 267, 284, 402, 666
SsiI	CCGC	4 cut(s)	27, 133, 546, 634
SspDI	GGCGCC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	2 cut(s)	86, 356
TaaI	ACNGT	2 cut(s)	22, 543
TaqI	TCGA	4 cut(s)	17, 312, 534, 613
TasI	AATT	7 cut(s)	13, 148, 249, 267, 284, 402, 666
TauI	GCSGC	3 cut(s)	29, 136, 549
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	120, 548
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	357, 577
TspRI	CASTG	2 cut(s)	120, 548
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	284, 666
XmaJI	CCTAGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.