Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Forward (+)

2529173 .. 2531488

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGTTCGGCAAGAGCCTGAGTAGCCAGATCGACGAGACCCTGCCGGAATGGCGCGACAAGTTCCTCTCCTACAAGGAGCTGAAGAAGCGCCTCAAGCTCATCGAGCCCAAAGGCGGCGACTCCTCGACCCGCCCCGCCAAGCGCCCCAGGCTCGACGGAGACGACATGTCGTCCGAGGAGATCAATTTCATTCAGCTCCTGGAAGACGAGCTCGAGAAGTTCAATTCCTTCTTCGTCGAAAAGGAAGAAGAGTATATTATTAGATTGAAGGAGATACAAGATAGTGTGGCGAAAGTGAAGCATTCGACTGAAGAGGTTATGAAGATACGCAAGGAGATAGTGGATTTTCATGGAGAGATGGTTTTGTTGGAGAATTACAGTGCCCTCAACTATACAGGACTGGTAAAGATACTCAAGAAGTACGATAAAAGAACTGGTGCTCTTATGCGCTTGCCCTTTATTCAGAAGGTCCTGCGACAACCTTTCTTCACCACTGACTTGCTTTACAAGCTTGTGAAGGAGTGCGAGTGCACCCTTGACCAGCTGTTTGCAATGTGTGAACCGCCAGCTTCAAATGAAGCATCTGATGATGCAGATGATGGTCCCTCAACTTCCAAGAGTAATGGACTTAGCAGAGTAAACAAGGAACTTGCAGAGATAGAGTACATCGAGAGCTTATACATGAAAAGCACTATATCGGCATTGCGAGCTTTGAAAGAAATTAGAAGAGGAAGCTCAACTGTGAGCGCATTTTCACTGCCACCACTGCAATTAAGTGGATTAGAAGAAGATGCCTGGAAAAAGGTCCCTGTTCTGGAACAGCTTGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.89

Weight (kDa)

5.58

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 36	9.4e-09	SPX domain
SPX	PF03105	102 - 158	2.3e-11	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	4 cut(s)	117, 133, 138, 566
AcuI	CTGAAG	2 cut(s)	104, 333
AfaI	GTAC	2 cut(s)	425, 668
AfiI	CCNNNNNNNGG	2 cut(s)	116, 817
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	226, 271, 576, 718
AhdI	GACNNNNNGTC	2 cut(s)	169, 172
AjnI	CCWGG	3 cut(s)	149, 201, 797
Alw21I	GWGCWC	3 cut(s)	216, 445, 536
Alw26I	GTCTC	2 cut(s)	32, 156
Alw44I	GTGCAC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	532
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AspLEI	GCGC	5 cut(s)	57, 93, 147, 453, 752
AspS9I	GGNCC	3 cut(s)	472, 605, 808
AsuHPI	GGTGA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	472, 605, 808
BaeGI	GKGCMC	2 cut(s)	388, 536
BanII	GRGCYC	2 cut(s)	111, 216
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	3 cut(s)	216, 445, 536
BccI	CCATC	2 cut(s)	355, 596
BciT130I	CCWGG	3 cut(s)	151, 203, 799
BcoDI	GTCTC	2 cut(s)	32, 156
BfoI	RGCGCY	2 cut(s)	94, 148
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	3 cut(s)	151, 203, 799
Bme18I	GGWCC	3 cut(s)	472, 605, 808
BmeRI	GACNNNNNGTC	2 cut(s)	169, 172
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	472, 605, 808
BmiI	GGNNCC	2 cut(s)	607, 810
BmrFI	CCNGG	3 cut(s)	151, 203, 799
BmsI	GCATC	3 cut(s)	583, 593, 784
BpiI	GAAGAC	1 cut(s)	213
BpuEI	CTTGAG	2 cut(s)	80, 401
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	149, 177
BsaXI	ACNNNNNCTCC	4 cut(s)	348, 378, 515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 817
Bse1I	ACTGG	2 cut(s)	408, 442
Bse3DI	GCAATG	2 cut(s)	561, 704
BseBI	CCWGG	3 cut(s)	151, 203, 799
BseDI	CCNNGG	2 cut(s)	149, 177
BseLI	CCNNNNNNNGG	2 cut(s)	116, 817
BseMI	GCAATG	2 cut(s)	561, 704
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	408, 442
BseRI	GAGGAG	2 cut(s)	115, 194
BseSI	GKGCMC	2 cut(s)	388, 536
Bsh1236I	CGCG	1 cut(s)	57
BsiHKAI	GWGCWC	3 cut(s)	216, 445, 536
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	591, 794
BslI	CCNNNNNNNGG	2 cut(s)	116, 817
BsmAI	GTCTC	2 cut(s)	32, 156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	591, 794
BsmI	GAATGC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	5 cut(s)	111, 216, 388, 445, 536
Bsp143I	GATC	2 cut(s)	30, 183
BspACI	CCGC	4 cut(s)	117, 133, 138, 566
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	607, 810
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	561, 704
BsrI	ACTGG	2 cut(s)	408, 442
BssECI	CCNNGG	2 cut(s)	149, 177
BssMI	GATC	2 cut(s)	30, 183
Bst2UI	CCWGG	3 cut(s)	151, 203, 799
Bst4CI	ACNGT	2 cut(s)	383, 745
Bst6I	CTCTTC	3 cut(s)	246, 309, 724
BstC8I	GCNNGC	4 cut(s)	455, 570, 711, 828
BstDEI	CTNAG	3 cut(s)	20, 632, 831
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	94, 148
BstHHI	GCGC	5 cut(s)	57, 93, 147, 453, 752
BstKTI	GATC	2 cut(s)	33, 186
BstMAI	GTCTC	2 cut(s)	32, 156
BstMBI	GATC	2 cut(s)	30, 183
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 52, 88, 97, 106, 151, 511, 710, 769
BstNI	CCWGG	3 cut(s)	151, 203, 799
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	149, 201, 797
BstSLI	GKGCMC	2 cut(s)	388, 536
BstUI	CGCG	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	213
BtsI	GCAGTG	2 cut(s)	758, 767
BtsIMutI	CAGTG	4 cut(s)	388, 495, 758, 767
Cac8I	GCNNGC	4 cut(s)	455, 570, 711, 828
CaiI	CAGNNNCTG	1 cut(s)	202
CfoI	GCGC	5 cut(s)	57, 93, 147, 453, 752
Cfr13I	GGNCC	3 cut(s)	472, 605, 808
Csp6I	GTAC	2 cut(s)	424, 667
CviAII	CATG	3 cut(s)	169, 353, 685
CviQI	GTAC	2 cut(s)	424, 667
DdeI	CTNAG	3 cut(s)	20, 632, 831
DpnI	GATC	2 cut(s)	32, 185
DpnII	GATC	2 cut(s)	30, 183
DriI	GACNNNNNGTC	2 cut(s)	169, 172
Eam1104I	CTCTTC	3 cut(s)	246, 309, 724
Eam1105I	GACNNNNNGTC	2 cut(s)	169, 172
EarI	CTCTTC	3 cut(s)	246, 309, 724
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	111, 216
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	3 cut(s)	472, 605, 808
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	104, 333
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	2 cut(s)	472, 808
EcoRII	CCWGG	3 cut(s)	149, 201, 797
EcoT38I	GRGCYC	2 cut(s)	111, 216
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	3 cut(s)	172, 356, 688
FaiI	YATR	9 cut(s)	170, 258, 323, 354, 396, 449, 682, 686, 698
FaqI	GGGAC	2 cut(s)	591, 794
FatI	CATG	3 cut(s)	168, 352, 684
FauI	CCCGC	2 cut(s)	140, 145
Fnu4HI	GCNGC	1 cut(s)	118
FriOI	GRGCYC	2 cut(s)	111, 216
Fsp4HI	GCNGC	1 cut(s)	118
GlaI	GCGC	5 cut(s)	56, 92, 146, 452, 751
GluI	GCNGC	1 cut(s)	118
HaeII	RGCGCY	2 cut(s)	94, 148
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	5 cut(s)	57, 93, 147, 453, 752
Hin1II	CATG	3 cut(s)	172, 356, 688
Hin6I	GCGC	5 cut(s)	55, 91, 145, 451, 750
HinP1I	GCGC	5 cut(s)	55, 91, 145, 451, 750
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	3 cut(s)	534, 563, 643
Hpy188I	TCNGA	3 cut(s)	178, 468, 589
Hpy188III	TCNNGA	4 cut(s)	217, 418, 673, 818
Hpy8I	GTNNAC	3 cut(s)	534, 563, 643
Hpy99I	CGWCG	3 cut(s)	38, 161, 242
HpyAV	CCTTC	4 cut(s)	241, 265, 463, 514
HpyCH4III	ACNGT	2 cut(s)	383, 745
HpyCH4V	TGCA	5 cut(s)	534, 554, 596, 656, 772
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 52, 88, 97, 106, 151, 511, 710, 769
HpyF3I	CTNAG	3 cut(s)	20, 632, 831
Hsp92II	CATG	3 cut(s)	172, 356, 688
HspAI	GCGC	5 cut(s)	55, 91, 145, 451, 750
Kzo9I	GATC	2 cut(s)	30, 183
LmnI	GCTCC	2 cut(s)	79, 204
LweI	GCATC	3 cut(s)	583, 593, 784
MalI	GATC	2 cut(s)	32, 185
MboI	GATC	2 cut(s)	30, 183
MhlI	GDGCHC	5 cut(s)	111, 216, 388, 445, 536
MluCI	AATT	5 cut(s)	187, 226, 376, 723, 773
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	8 cut(s)	77, 104, 136, 172, 310, 398, 619, 725
MseI	TTAA	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	151, 203, 799
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	3 cut(s)	151, 203, 799
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	9 cut(s)	24, 52, 88, 97, 106, 151, 511, 710, 769
NdeII	GATC	2 cut(s)	30, 183
NlaIII	CATG	3 cut(s)	172, 356, 688
NlaIV	GGNNCC	2 cut(s)	607, 810
NspI	RCATGY	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	215
PciI	ACATGT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	2 cut(s)	472, 808
PscI	ACATGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	2 cut(s)	472, 808
Psp6I	CCWGG	3 cut(s)	149, 201, 797
PspGI	CCWGG	3 cut(s)	149, 201, 797
PspN4I	GGNNCC	2 cut(s)	607, 810
PspPI	GGNCC	3 cut(s)	472, 605, 808
PspPPI	RGGWCCY	2 cut(s)	472, 808
PstNI	CAGNNNCTG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	425, 668
RsaNI	GTAC	2 cut(s)	424, 667
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	30, 183
Sau96I	GGNCC	3 cut(s)	472, 605, 808
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	151, 203, 799
SduI	GDGCHC	5 cut(s)	111, 216, 388, 445, 536
SfaNI	GCATC	3 cut(s)	583, 593, 784
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	3 cut(s)	472, 605, 808
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	95, 215, 416
SmoI	CTYRAG	3 cut(s)	95, 215, 416
Sse9I	AATT	5 cut(s)	187, 226, 376, 723, 773
SsiI	CCGC	4 cut(s)	117, 133, 138, 566
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	149, 201, 797
TaaI	ACNGT	2 cut(s)	383, 745
TaqI	TCGA	8 cut(s)	33, 105, 128, 156, 216, 240, 308, 672
TasI	AATT	5 cut(s)	187, 226, 376, 723, 773
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TscAI	CASTG	4 cut(s)	388, 502, 765, 774
TspDTI	ATGAA	6 cut(s)	17, 181, 338, 341, 594, 701
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	4 cut(s)	388, 502, 765, 774
VneI	GTGCAC	1 cut(s)	532
VpaK11BI	GGWCC	3 cut(s)	472, 605, 808
XceI	RCATGY	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.