AT4G26170

DNA binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13256930 .. 13259384
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26170.1

Sequence Viewer

Length: 1521 bp
ATGTTAGTTGTCCTACAAATTCATTCATCTATAAACGTTAAAGTCTTTGCATCTCGTCTAAGAAAGCATTTTTTCTTCACTCGAAGAAAAATAACAAGAATTGCAACTTGTCTCTCTTCTTCACGTTGTCCATTGTATCCTTCCCACTGGAATCTTTGTAGGTGGAATAACAAACAAGGAGGAACAGAAATCGGTTTGCTAATTGGCGGGTTAATAGTTTTCAGACAAACTCTCAAGTCCGATCAGGAAACGAAACGAGAACAAAAGAAAAGAGATTGGATTTTGGTGACGGCGTTTCCTTCGCCGTCGTGTTCACCATGTTCAAGAGAGACGACTACATTCGAACTAATCATGACCCCTTTTTTTCAAAGTGGCAGGGTTTCGCCCGATCTATGTTTCTGCGTAAACCCATTTCAGAAACTGCAGAATTCGCAAGACTTTTGCGGACTACTCCTTAATTTCTCGAGATTTAGGTCCAAAGCCAAAGGAGCCAACGAGAAGGAAAATTTCAGAGAAGGGAAAGATCTTGTTGGTAGAAACAGAGTCCAAGGAGCCTTCCAGGGTCTGTATGAGCTCAGTCATGACCATGGCAGAAAAGATGATGTTCTTGTGGCTAATCTTGGTCAACCTGAAAGCATTAGATCCCGGCTCCGGTCTTATAGTAGATCTTTTGCTCATCATGACTTGCTTAAGCAGGGTTTGTCTCAAACTATTCTTCCTACTACTCAGAACAAAAGTGACAACCAAACCGAAGAGAAGAAGTCTGATTCTGAAGAAGAGAGAGAGGTCAGTTCTGATGCTGCTGAGAAGGAGAGTAATTCGCTTCCATCTATACTTAGACTCAGTCGGTCTAGACCTCAACCGGTTTCAGAGAAACATGATGACATAGTTGATGAGTCTGATTCTGCTTCTGCTTGTGGAGTCTTACTAGAAGATGGTACTACTTGCACTACAACTCCAGTCAAAGGAAGAAAGAGATGCACAGAGCATAAAGGGAAGAGACTTTCTCGTGTTTCCCCCGGGATCCACATACCGTGTGAAGTTCCTACCGTAAGAGAATGTGAAGAAACTGAGAATATATGTGGAGTGATTTTACCTGACATGATACGTTGCAGAAGTAAACCTGTTTCAAGGAGAAAACGATGCGAGGATCACAAGGGAATGAGAGTTAACGCCTTCTTTTTTCTGCTGAACCCAACAGAACGTGATAAAGCCGTCAATGAGGACAAATCCAAACCTGAGACAAGTACAGGCATGAACCAAGAGGGTTCGGGTCTTTTATGTGAAGCTACAACAAAGAATGGATTGCCTTGTACAAGAAGTGCTCCTGAGGGCAGCAAAAGATGTTGGCAGCACAAAGATAAAACATTGAACCACGGATCATCTGAAAATGTTCAGTCAGCAACTGCAAGTCAAGTAATTTGTGGCTTTAAGCTGTACAATGGATCAGTATGCGAGAAATCTCCAGTGAAAGGAAGGAAGAGATGTGAGGAGCACAAGGGGATGAGAATCACATCTTGA

Protein Analysis

506

Amino Acids

57.0

Weight (kDa)

9.26

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 207, 444
AclI AACGTT 1 cut(s) 36
AclWI GGATC 6 cut(s) 636, 1018, 1031, 1158, 1387, 1453
AcsI RAATTY 3 cut(s) 18, 427, 505
AcuI CTGAAG 1 cut(s) 792
AfaI GTAC 4 cut(s) 940, 1249, 1315, 1439
AfiI CCNNNNNNNGG 3 cut(s) 651, 965, 1472
AflII CTTAAG 1 cut(s) 689
AgeI ACCGGT 1 cut(s) 862
AgsI TTSAA 4 cut(s) 324, 368, 1131, 1372
AjnI CCWGG 1 cut(s) 558
AluBI AGCT 3 cut(s) 574, 1289, 1435
AluI AGCT 3 cut(s) 574, 1289, 1435
Alw21I GWGCWC 3 cut(s) 576, 1327, 1497
Alw26I GTCTC 5 cut(s) 116, 323, 708, 994, 1235
AlwI GGATC 6 cut(s) 636, 1018, 1031, 1158, 1387, 1453
AlwNI CAGNNNCTG 3 cut(s) 421, 565, 1406
Ama87I CYCGRG 2 cut(s) 463, 1019
ApeKI GCWGC 3 cut(s) 800, 1335, 1351
ApoI RAATTY 3 cut(s) 18, 427, 505
AsiGI ACCGGT 1 cut(s) 862
Asp700I GAANNNNTTC 1 cut(s) 1392
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 3 cut(s) 646, 1020, 1021
AsuHPI GGTGA 2 cut(s) 298, 306
AsuII TTCGAA 1 cut(s) 342
AvaI CYCGRG 2 cut(s) 463, 1019
AvaII GGWCC 1 cut(s) 474
AxyI CCTNAGG 1 cut(s) 1329
BamHI GGATCC 1 cut(s) 1023
BanII GRGCYC 1 cut(s) 576
BauI CACGAG 1 cut(s) 1008
Bbv12I GWGCWC 3 cut(s) 576, 1327, 1497
BbvI GCAGC 3 cut(s) 787, 1347, 1363
BccI CCATC 2 cut(s) 835, 929
BceAI ACGGC 3 cut(s) 289, 306, 1199
BciT130I CCWGG 1 cut(s) 560
BciVI GTATCC 1 cut(s) 147
BcnI CCSGG 3 cut(s) 646, 1020, 1021
BcoDI GTCTC 5 cut(s) 116, 323, 708, 994, 1235
BfaI CTAG 2 cut(s) 852, 929
BfmI CTRYAG 1 cut(s) 422
BfrI CTTAAG 1 cut(s) 689
BfuI GTATCC 1 cut(s) 147
BglII AGATCT 2 cut(s) 523, 665
BisI GCNGC 3 cut(s) 801, 1336, 1352
BlsI GCNGC 3 cut(s) 802, 1337, 1353
Bme1390I CCNGG 4 cut(s) 560, 646, 1020, 1021
Bme18I GGWCC 1 cut(s) 474
BmeT110I CYCGRG 2 cut(s) 463, 1019
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 4 cut(s) 490, 553, 650, 1025
BmrFI CCNGG 4 cut(s) 560, 646, 1020, 1021
BmsI GCATC 4 cut(s) 59, 787, 968, 1133
BplI GAGNNNNNCTC 2 cut(s) 991, 1023
BpmI CTGGAG 2 cut(s) 942, 1449
Bpu14I TTCGAA 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 3 cut(s) 646, 1020, 1021
BsaBI GATNNNNATC 1 cut(s) 1508
BsaJI CCNNGG 6 cut(s) 547, 559, 586, 1018, 1019, 1375
BsaWI WCCGGW 2 cut(s) 651, 862
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 3 cut(s) 651, 965, 1472
Bse118I RCCGGY 1 cut(s) 862
Bse1I ACTGG 3 cut(s) 152, 959, 1466
Bse21I CCTNAGG 1 cut(s) 1329
Bse8I GATNNNNATC 1 cut(s) 1508
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 6 cut(s) 547, 559, 586, 1018, 1019, 1375
BseGI GGATG 1 cut(s) 1509
BseJI GATNNNNATC 1 cut(s) 1508
BseLI CCNNNNNNNGG 3 cut(s) 651, 965, 1472
BseMII CTCAG 7 cut(s) 589, 740, 795, 856, 1062, 1230, 1320
BseNI ACTGG 3 cut(s) 152, 959, 1466
BseRI GAGGAG 1 cut(s) 1505
BseXI GCAGC 3 cut(s) 787, 1347, 1363
BshTI ACCGGT 1 cut(s) 862
BsiHKAI GWGCWC 3 cut(s) 576, 1327, 1497
BsiHKCI CYCGRG 2 cut(s) 463, 1019
BsiSI CCGG 4 cut(s) 646, 652, 863, 1020
BslI CCNNNNNNNGG 3 cut(s) 651, 965, 1472
BsmAI GTCTC 5 cut(s) 116, 323, 708, 994, 1235
BsmBI CGTCTC 1 cut(s) 323
BsoBI CYCGRG 2 cut(s) 463, 1019
Bsp119I TTCGAA 1 cut(s) 342
Bsp1286I GDGCHC 3 cut(s) 576, 1327, 1497
Bsp1407I TGTACA 2 cut(s) 1313, 1437
Bsp143I GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
Bsp19I CCATGG 1 cut(s) 586
BspACI CCGC 2 cut(s) 207, 444
BspCNI CTCAG 7 cut(s) 588, 739, 796, 855, 1063, 1231, 1321
BspHI TCATGA 3 cut(s) 351, 580, 679
BspLI GGNNCC 4 cut(s) 490, 553, 650, 1025
BspMAI CTGCAG 1 cut(s) 426
BspPI GGATC 6 cut(s) 636, 1018, 1031, 1158, 1387, 1453
BspT104I TTCGAA 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 689
BsrFI RCCGGY 1 cut(s) 862
BsrGI TGTACA 2 cut(s) 1313, 1437
BsrI ACTGG 3 cut(s) 152, 959, 1466
BssAI RCCGGY 1 cut(s) 862
BssECI CCNNGG 6 cut(s) 547, 559, 586, 1018, 1019, 1375
BssMI GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
BssSI CACGAG 1 cut(s) 1008
BssT1I CCWWGG 2 cut(s) 547, 586
Bst2BI CACGAG 1 cut(s) 1008
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 1035, 1051
Bst6I CTCTTC 5 cut(s) 121, 747, 771, 992, 1475
BstAFI CTTAAG 1 cut(s) 689
BstAUI TGTACA 2 cut(s) 1313, 1437
BstBI TTCGAA 1 cut(s) 342
BstDEI CTNAG 9 cut(s) 59, 575, 726, 804, 836, 842, 1071, 1239, 1329
BstDSI CCRYGG 2 cut(s) 586, 1375
BstF5I GGATG 1 cut(s) 1509
BstKTI GATC 9 cut(s) 244, 391, 526, 644, 668, 1026, 1153, 1382, 1448
BstMAI GTCTC 5 cut(s) 116, 323, 708, 994, 1235
BstMBI GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
BstMWI GCNNNNNNNGC 2 cut(s) 430, 488
BstNI CCWGG 1 cut(s) 560
BstSCI CCNGG 4 cut(s) 558, 644, 1018, 1019
BstSFI CTRYAG 1 cut(s) 422
BstV1I GCAGC 3 cut(s) 787, 1347, 1363
BstX2I RGATCY 4 cut(s) 523, 641, 665, 1023
BstYI RGATCY 4 cut(s) 523, 641, 665, 1023
Bsu36I CCTNAGG 1 cut(s) 1329
BsuI GTATCC 1 cut(s) 147
BtgI CCRYGG 2 cut(s) 586, 1375
BtsCI GGATG 1 cut(s) 1509
BtsIMutI CAGTG 2 cut(s) 145, 1473
CaiI CAGNNNCTG 3 cut(s) 421, 565, 1406
CciI TCATGA 3 cut(s) 351, 580, 679
Cfr10I RCCGGY 1 cut(s) 862
Cfr13I GGNCC 1 cut(s) 474
Cfr9I CCCGGG 1 cut(s) 1019
Csp6I GTAC 4 cut(s) 939, 1248, 1314, 1438
CspAI ACCGGT 1 cut(s) 862
CviAII CATG 8 cut(s) 318, 352, 581, 587, 680, 878, 1102, 1255
CviQI GTAC 4 cut(s) 939, 1248, 1314, 1438
DdeI CTNAG 9 cut(s) 59, 575, 726, 804, 836, 842, 1071, 1239, 1329
DpnI GATC 9 cut(s) 243, 390, 525, 643, 667, 1025, 1152, 1381, 1447
DpnII GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
Eam1104I CTCTTC 5 cut(s) 121, 747, 771, 992, 1475
EarI CTCTTC 5 cut(s) 121, 747, 771, 992, 1475
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 2 cut(s) 547, 586
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 792
Eco81I CCTNAGG 1 cut(s) 1329
Eco88I CYCGRG 2 cut(s) 463, 1019
EcoICRI GAGCTC 1 cut(s) 574
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 558
EcoT14I CCWWGG 2 cut(s) 547, 586
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 2 cut(s) 547, 586
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 8 cut(s) 321, 355, 584, 590, 683, 881, 1105, 1258
FatI CATG 8 cut(s) 317, 351, 580, 586, 679, 877, 1101, 1254
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 3 cut(s) 801, 1336, 1352
FokI GGATG 1 cut(s) 1516
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 3 cut(s) 801, 1336, 1352
FspBI CTAG 2 cut(s) 852, 929
GluI GCNGC 3 cut(s) 801, 1336, 1352
GsuI CTGGAG 2 cut(s) 942, 1449
HapII CCGG 4 cut(s) 646, 652, 863, 1020
Hin1II CATG 8 cut(s) 321, 355, 584, 590, 683, 881, 1105, 1258
HincII GTYRAC 2 cut(s) 626, 1171
HindII GTYRAC 2 cut(s) 626, 1171
HinfI GANTC 8 cut(s) 151, 543, 767, 840, 896, 902, 921, 1509
HpaI GTTAAC 1 cut(s) 1171
HpaII CCGG 4 cut(s) 646, 652, 863, 1020
HphI GGTGA 2 cut(s) 298, 306
Hpy166II GTNNAC 5 cut(s) 314, 406, 626, 1121, 1171
Hpy8I GTNNAC 5 cut(s) 314, 406, 626, 1121, 1171
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 8 cut(s) 150, 309, 493, 509, 565, 802, 1186, 1470
HpyCH4III ACNGT 2 cut(s) 1035, 1051
HpyCH4IV ACGT 4 cut(s) 36, 124, 1108, 1204
HpyCH4V TGCA 7 cut(s) 50, 104, 424, 948, 981, 1113, 1409
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 488
HpyF3I CTNAG 9 cut(s) 59, 575, 726, 804, 836, 842, 1071, 1239, 1329
HpySE526I ACGT 4 cut(s) 36, 124, 1108, 1204
Hsp92II CATG 8 cut(s) 321, 355, 584, 590, 683, 881, 1105, 1258
KspAI GTTAAC 1 cut(s) 1171
Kzo9I GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
LmnI GCTCC 5 cut(s) 488, 551, 654, 1330, 1492
Lsp1109I GCAGC 3 cut(s) 787, 1347, 1363
LweI GCATC 4 cut(s) 59, 787, 968, 1133
MaeI CTAG 2 cut(s) 852, 929
MaeII ACGT 4 cut(s) 36, 124, 1108, 1204
MaeIII GTNAC 2 cut(s) 286, 737
MalI GATC 9 cut(s) 243, 390, 525, 643, 667, 1025, 1152, 1381, 1447
MboI GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
MflI RGATCY 4 cut(s) 523, 641, 665, 1023
MhlI GDGCHC 3 cut(s) 576, 1327, 1497
MluCI AATT 8 cut(s) 18, 99, 201, 427, 457, 505, 817, 1419
MlyI GAGTC 4 cut(s) 552, 834, 905, 930
MnlI CCTC 8 cut(s) 173, 778, 867, 1141, 1216, 1258, 1324, 1483
MroXI GAANNNNTTC 1 cut(s) 1392
MseI TTAA 6 cut(s) 39, 212, 456, 690, 1170, 1431
MslI CAYNNNNRTG 1 cut(s) 585
MspCI CTTAAG 1 cut(s) 689
MspI CCGG 4 cut(s) 646, 652, 863, 1020
MspR9I CCNGG 4 cut(s) 560, 646, 1020, 1021
MvaI CCWGG 1 cut(s) 560
MwoI GCNNNNNNNGC 2 cut(s) 430, 488
NciI CCSGG 3 cut(s) 646, 1020, 1021
NcoI CCATGG 1 cut(s) 586
NdeII GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
NlaIII CATG 8 cut(s) 321, 355, 584, 590, 683, 881, 1105, 1258
NlaIV GGNNCC 4 cut(s) 490, 553, 650, 1025
NmuCI GTSAC 2 cut(s) 286, 737
NspV TTCGAA 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 463
PagI TCATGA 3 cut(s) 351, 580, 679
PdmI GAANNNNTTC 1 cut(s) 1392
PfeI GAWTC 4 cut(s) 151, 767, 902, 1509
PflFI GACNNNGTC 1 cut(s) 843
PinAI ACCGGT 1 cut(s) 862
PkrI GCNGC 3 cut(s) 802, 1337, 1353
PleI GAGTC 4 cut(s) 551, 834, 904, 929
PpsI GAGTC 4 cut(s) 551, 834, 904, 929
Psp124BI GAGCTC 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 558
PspN4I GGNNCC 4 cut(s) 490, 553, 650, 1025
PspPI GGNCC 1 cut(s) 474
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 3 cut(s) 421, 565, 1406
PsuI RGATCY 4 cut(s) 523, 641, 665, 1023
PsyI GACNNNGTC 1 cut(s) 843
RsaI GTAC 4 cut(s) 940, 1249, 1315, 1439
RsaNI GTAC 4 cut(s) 939, 1248, 1314, 1438
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 6 cut(s) 39, 212, 456, 690, 1170, 1431
SatI GCNGC 3 cut(s) 801, 1336, 1352
Sau3AI GATC 9 cut(s) 241, 388, 523, 641, 665, 1023, 1150, 1379, 1445
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 4 cut(s) 552, 834, 905, 930
ScrFI CCNGG 4 cut(s) 560, 646, 1020, 1021
SduI GDGCHC 3 cut(s) 576, 1327, 1497
SfaNI GCATC 4 cut(s) 59, 787, 968, 1133
SfcI CTRYAG 1 cut(s) 422
Sfr274I CTCGAG 1 cut(s) 463
SfuI TTCGAA 1 cut(s) 342
SinI GGWCC 1 cut(s) 474
SlaI CTCGAG 1 cut(s) 463
SmaI CCCGGG 1 cut(s) 1021
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 3 cut(s) 233, 463, 689
SmoI CTYRAG 3 cut(s) 233, 463, 689
Sse9I AATT 8 cut(s) 18, 99, 201, 427, 457, 505, 817, 1419
SsiI CCGC 2 cut(s) 207, 444
SspMI CTAG 2 cut(s) 852, 929
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 4 cut(s) 558, 644, 1018, 1019
StyI CCWWGG 2 cut(s) 547, 586
TaaI ACNGT 2 cut(s) 1035, 1051
TaiI ACGT 4 cut(s) 39, 127, 1111, 1207
TaqI TCGA 3 cut(s) 82, 342, 464
TaqII GACCGA 1 cut(s) 837
TasI AATT 8 cut(s) 18, 99, 201, 427, 457, 505, 817, 1419
TatI WGTACW 3 cut(s) 1247, 1313, 1437
TfiI GAWTC 4 cut(s) 151, 767, 902, 1509
Tru1I TTAA 6 cut(s) 39, 212, 456, 690, 1170, 1431
Tru9I TTAA 6 cut(s) 39, 212, 456, 690, 1170, 1431
TscAI CASTG 2 cut(s) 152, 1473
TseFI GTSAC 2 cut(s) 286, 737
TseI GCWGC 3 cut(s) 800, 1335, 1351
Tsp45I GTSAC 2 cut(s) 286, 737
TspDTI ATGAA 3 cut(s) 11, 15, 1271
TspGWI ACGGA 1 cut(s) 1392
TspMI CCCGGG 1 cut(s) 1019
TspRI CASTG 2 cut(s) 152, 1473
Tth111I GACNNNGTC 1 cut(s) 843
Vha464I CTTAAG 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 3 cut(s) 18, 427, 505
XbaI TCTAGA 1 cut(s) 851
XhoI CTCGAG 1 cut(s) 463
XmaI CCCGGG 1 cut(s) 1019
XmnI GAANNNNTTC 1 cut(s) 1392
XspI CTAG 2 cut(s) 852, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.