Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039828.1

Orthogroup ID

OG0004053

Physical Location & Seq

Genomic Coordinates Reverse (-)

614 .. 1245

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039828.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggtgtccagcgacttaaccgttgctctccaaaggttgaagagggaagaatgcaagcgcacaaagcacgacccccatttctccaattggaaggttcttgttgggccctgtgattgggaggacttttcggtggggaaggaaggagctgaaaggtacagagtgcataacctgcctaggaacgagagcccaggagtgtatgaactcggagttgctgttttgcgcagtggttcaggccgtgggattgaagcggataaaatagtcccggtttatcttggacaggctgatagtgtgaggaccaggctccagcagtatggccggacaggggctcatttgggcaagtgctgctcggttgggattccgagcgagcgaatccgaaaggggcctggattgtttgagcagatcctggcaagaggctaccccattgtgtatagatgggctcctgtaagtttgatctatgatttatctcatttcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.78

Weight (kDa)

9.39

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26170 AT5G56780
fragaria_vesca	FvH4_1g07150 FvH4_1g07151 FvH4_1g07151 FvH4_1g07231
malus_domestica	MD02G1075500.v1.1 MD02G1076000.v1.1
prunus_persica	Prupe.7G212600_v2.0.a1
pyrus_communis	pycom02g05960 pycom02g06030
rosa_chinensis	RchiOBHm_Chr2g0093031 RchiOBHm_Chr2g0093041
rosa_laevigata	RLG00000016361 RLG00000016362
rosa_multiflora	Rmu_co8308583.1_g000001 Rmu_sc0034350.1_g000001 Rmu_sc0039828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148580 Rroxscaffold_2G00148600
rosa_rugosa	Rorug02G0031500 Rorug02G0031500 Rorug02G0031600 Rorug02G0031700 Rorug02G0031800
rosa_samantha	Rh2AG077400 Rh2BG078800 Rh2CG081000 Rh2CG081100 Rh2DG076200 Rh2DG076300
rosa_wichuraiana	Rw0G010360 Rw2G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	177
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	313
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	114, 322
AgsI	TTSAA	3 cut(s)	40, 245, 472
AjnI	CCWGG	4 cut(s)	187, 296, 382, 402
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	4 cut(s)	104, 232, 313, 380
ApaI	GGGCCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	342
AspA2I	CCTAGG	1 cut(s)	173
AspLEI	GCGC	2 cut(s)	60, 222
AspS9I	GGNCC	4 cut(s)	104, 105, 294, 380
AsuC2I	CCSGG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	294
AvrII	CCTAGG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	108
BanII	GRGCYC	4 cut(s)	108, 188, 328, 439
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	1 cut(s)	426
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	4 cut(s)	189, 298, 384, 404
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	1 cut(s)	343
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	5 cut(s)	189, 263, 298, 384, 404
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	4 cut(s)	104, 105, 294, 380
BmiI	GGNNCC	4 cut(s)	106, 302, 381, 438
BmrFI	CCNGG	5 cut(s)	189, 263, 298, 384, 404
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	173, 187, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 322
BseBI	CCWGG	4 cut(s)	189, 298, 384, 404
BseDI	CCNNGG	3 cut(s)	173, 187, 235
BseLI	CCNNNNNNNGG	2 cut(s)	114, 322
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	329
BshFI	GGCC	4 cut(s)	106, 234, 315, 382
BsiSI	CCGG	2 cut(s)	263, 316
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	114, 322
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	4 cut(s)	106, 234, 315, 382
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	4 cut(s)	108, 188, 328, 439
Bsp143I	GATC	2 cut(s)	399, 450
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	4 cut(s)	106, 234, 315, 382
BspLI	GGNNCC	4 cut(s)	106, 302, 381, 438
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	173, 187, 235
BssMI	GATC	2 cut(s)	399, 450
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	4 cut(s)	189, 298, 384, 404
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	2 cut(s)	169, 342
BstC8I	GCNNGC	2 cut(s)	56, 365
BstDSI	CCRYGG	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	60, 222
BstKTI	GATC	2 cut(s)	402, 453
BstMBI	GATC	2 cut(s)	399, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 169, 342
BstNI	CCWGG	4 cut(s)	189, 298, 384, 404
BstSCI	CCNGG	5 cut(s)	187, 261, 296, 382, 402
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	399
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	4 cut(s)	106, 234, 315, 382
BtgI	CCRYGG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	56, 365
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	2 cut(s)	60, 222
Cfr13I	GGNCC	4 cut(s)	104, 105, 294, 380
Csp6I	GTAC	1 cut(s)	154
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	2 cut(s)	401, 452
DpnII	GATC	2 cut(s)	399, 450
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	4 cut(s)	108, 188, 328, 439
Eco47I	GGWCC	1 cut(s)	294
EcoO109I	RGGNCCY	2 cut(s)	105, 380
EcoRII	CCWGG	4 cut(s)	187, 296, 382, 402
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	4 cut(s)	108, 188, 328, 439
ErhI	CCWWGG	1 cut(s)	173
FaiI	YATR	5 cut(s)	165, 198, 312, 429, 456
FaqI	GGGAC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	343
FriOI	GRGCYC	4 cut(s)	108, 188, 328, 439
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	174
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	2 cut(s)	59, 221
GluI	GCNGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	4 cut(s)	106, 234, 315, 382
HapII	CCGG	2 cut(s)	263, 316
HhaI	GCGC	2 cut(s)	60, 222
Hin6I	GCGC	2 cut(s)	58, 220
HinP1I	GCGC	2 cut(s)	58, 220
HinfI	GANTC	2 cut(s)	355, 369
HpaII	CCGG	2 cut(s)	263, 316
Hpy188I	TCNGA	3 cut(s)	206, 360, 374
HpyAV	CCTTC	3 cut(s)	85, 130, 134
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	54, 163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 169, 342
HspAI	GCGC	2 cut(s)	58, 220
Kzo9I	GATC	2 cut(s)	399, 450
LmnI	GCTCC	3 cut(s)	143, 306, 442
Lsp1109I	GCAGC	1 cut(s)	329
MaeI	CTAG	1 cut(s)	174
MalI	GATC	2 cut(s)	401, 452
MboI	GATC	2 cut(s)	399, 450
MboII	GAAGA	2 cut(s)	52, 59
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	4 cut(s)	108, 188, 328, 439
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	4 cut(s)	36, 112, 285, 404
MseI	TTAA	1 cut(s)	17
MspI	CCGG	2 cut(s)	263, 316
MspR9I	CCNGG	5 cut(s)	189, 263, 298, 384, 404
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	4 cut(s)	189, 298, 384, 404
MwoI	GCNNNNNNNGC	3 cut(s)	64, 169, 342
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	399, 450
NlaIV	GGNNCC	4 cut(s)	106, 302, 381, 438
NsbI	TGCGCA	1 cut(s)	221
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	355, 369
PkrI	GCNGC	1 cut(s)	344
Psp6I	CCWGG	4 cut(s)	187, 296, 382, 402
PspGI	CCWGG	4 cut(s)	187, 296, 382, 402
PspN4I	GGNNCC	4 cut(s)	106, 302, 381, 438
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	4 cut(s)	104, 105, 294, 380
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	399, 450
Sau96I	GGNCC	4 cut(s)	104, 105, 294, 380
ScrFI	CCNGG	5 cut(s)	189, 263, 298, 384, 404
SduI	GDGCHC	4 cut(s)	108, 188, 328, 439
SetI	ASST	5 cut(s)	38, 96, 148, 155, 171
SinI	GGWCC	1 cut(s)	294
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	5 cut(s)	187, 261, 296, 382, 402
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	355, 369
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	294
XmaJI	CCTAGG	1 cut(s)	173
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.