Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014050

Physical Location & Seq

Genomic Coordinates Reverse (-)

3774005 .. 3775484

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCGTCCGGTGAGCTGCGGCAGTCCGACTGCTCGGAGGACGAGGCCGAGCAGTGGCTGTGGGCCCGGATCAAAGCGGAGGCGAAGCGCGACGCCGAGTCGGAGCCGGCTCTGGCCAGCTACCTCTACTCGACCATCCTCTCGCACTCGTCGCTGGAGCGATCGCTGTCGTTTCACCTCGGCAACAAGCTCTGCTCCTCCACTCTCCTCTCCACGCTTCTCTACGACCTCTTCCTCAACACCTTCTCTTCCGACTCCTCTCTACGCGCCGCCGCCGTCGCTGATCTACGCGCCGCCCACGAGCGCGACCCGGCCTGCGTGTCGTTCTCTCACTGCTTGCTCAATTACAAAGGCTTTCTGGCATGTCAGGCTCACCGAGTGGCACATAAGCTGTGGATTCAGTCACGCAGGCCGCTGGCGCTAGCGCTCCACTCACGGATAGCTGATGTGTTTGCGGTGGACATTCACCCGGCAGCGAGGATTGGGAAAGGGGTGCTGTTCGACCACGCGACAGGAGTGGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCCATACTCCACCACGTGACGCTGGGAGGGACTGGAAAGGTCGGGGGAGACAGACACCCAAAGATTGGTGATGGGGTACTTATTGGAGCTGGGGCGACGATTTTGGGGAATGTGAAGATTGGAGAGGGGGCAAAGATTGGGGCGGGGTCGGTGGTGCTTATTGACGTGCCGGCGAGGACTACGGCGGTGGGGAATCCGGCGAGATTGGTTGGCGGGAAGGAGAAGCCGTCGAGGCATGAAGATGTGCCTGGAGAATCCATGGACCATACCTCGTTTTTATCAGAGTGGTCTGACTATATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

287

Amino Acids

30.56

Weight (kDa)

6.53

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	20 - 124	6e-36	Serine acetyltransferase, N-terminal
Hexapep	PF00132	204 - 237	1.3e-11	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56760
fragaria_vesca	FvH4_1g07140
malus_domestica	MD02G1075800.v1.1 MD02G1238300.v1.1
prunus_persica	Prupe.7G212700_v2.0.a1
pyrus_communis	pycom02g20370 pycom02g21490
rosa_chinensis	RchiOBHm_Chr2g0093021
rosa_laevigata	RLG00000016360
rosa_multiflora	Rmu_sc0000965.1_g000024 Rmu_sc0007577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148610
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077300 Rh2BG078700 Rh2CG080900
rosa_wichuraiana	Rw2G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccII	CGCG	5 cut(s)	90, 267, 291, 306, 509
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	114
AcvI	CACGTG	1 cut(s)	571
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	2 cut(s)	379, 571
AfaI	GTAC	1 cut(s)	633
AfeI	AGCGCT	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	54, 620
AhdI	GACNNNNNGTC	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	721
AjnI	CCWGG	1 cut(s)	802
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	6 cut(s)	16, 120, 190, 391, 443, 644
AluI	AGCT	6 cut(s)	16, 120, 190, 391, 443, 644
Alw26I	GTCTC	2 cut(s)	524, 597
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	58
Aor51HI	AGCGCT	1 cut(s)	426
AoxI	GGCC	5 cut(s)	45, 63, 114, 312, 410
ApaI	GGGCCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	16, 473
AsiSI	GCGATCGC	1 cut(s)	164
AspLEI	GCGC	6 cut(s)	90, 269, 293, 306, 421, 427
AspS9I	GGNCC	3 cut(s)	63, 64, 817
AsuC2I	CCSGG	3 cut(s)	67, 311, 470
AsuHPI	GGTGA	6 cut(s)	23, 167, 365, 458, 550, 635
AsuNHI	GCTAGC	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	817
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	571
BbvI	GCAGC	2 cut(s)	3, 485
BccI	CCATC	2 cut(s)	143, 620
BceAI	ACGGC	4 cut(s)	260, 549, 753, 766
BciT130I	CCWGG	1 cut(s)	804
BcnI	CCSGG	3 cut(s)	67, 311, 470
BcoDI	GTCTC	2 cut(s)	524, 597
BfaI	CTAG	1 cut(s)	422
BfoI	RGCGCY	2 cut(s)	422, 428
BglI	GCCNNNNNGGC	1 cut(s)	787
BisI	GCNGC	7 cut(s)	17, 20, 270, 273, 294, 413, 474
BlsI	GCNGC	7 cut(s)	18, 21, 271, 274, 295, 414, 475
Bme1390I	CCNGG	4 cut(s)	67, 311, 470, 804
Bme18I	GGWCC	1 cut(s)	817
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	3 cut(s)	63, 64, 817
BmiI	GGNNCC	2 cut(s)	65, 105
BmrFI	CCNGG	4 cut(s)	67, 311, 470, 804
BmtI	GCTAGC	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	176, 825
BpuMI	CCSGG	3 cut(s)	67, 311, 470
BsaAI	YACGTR	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	178, 813
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	4 cut(s)	507, 537, 767, 797
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 620
Bse118I	RCCGGY	2 cut(s)	106, 724
Bse1I	ACTGG	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	178, 813
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	54, 620
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	3 cut(s)	187, 197, 247
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	3, 485
BseYI	CCCAGC	2 cut(s)	577, 644
Bsh1236I	CGCG	5 cut(s)	90, 267, 291, 306, 509
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	5 cut(s)	47, 65, 116, 314, 412
BsiEI	CGRYCG	1 cut(s)	164
BsiSI	CCGG	7 cut(s)	9, 67, 107, 311, 470, 725, 752
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	54, 620
BsmAI	GTCTC	2 cut(s)	524, 597
BsmBI	CGTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	598
BsnI	GGCC	5 cut(s)	47, 65, 116, 314, 412
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	69, 161, 283
Bsp19I	CCATGG	1 cut(s)	813
BspANI	GGCC	5 cut(s)	47, 65, 116, 314, 412
BspFNI	CGCG	5 cut(s)	90, 267, 291, 306, 509
BspLI	GGNNCC	2 cut(s)	65, 105
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	106, 724
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	2 cut(s)	106, 724
BssECI	CCNNGG	2 cut(s)	178, 813
BssMI	GATC	3 cut(s)	69, 161, 283
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	804
Bst6I	CTCTTC	2 cut(s)	236, 253
BstACI	GRCGYC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	571
BstC8I	GCNNGC	8 cut(s)	108, 118, 316, 338, 410, 417, 423, 726
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	5 cut(s)	90, 267, 291, 306, 509
BstH2I	RGCGCY	2 cut(s)	422, 428
BstHHI	GCGC	6 cut(s)	90, 269, 293, 306, 421, 427
BstKTI	GATC	3 cut(s)	72, 164, 286
BstMAI	GTCTC	2 cut(s)	524, 597
BstMBI	GATC	3 cut(s)	69, 161, 283
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 278, 368, 418, 787
BstNI	CCWGG	1 cut(s)	804
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	4 cut(s)	65, 309, 468, 802
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	5 cut(s)	90, 267, 291, 306, 509
BstV1I	GCAGC	2 cut(s)	3, 485
BsuRI	GGCC	5 cut(s)	47, 65, 116, 314, 412
BtgI	CCRYGG	1 cut(s)	813
BtrI	CACGTC	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	2 cut(s)	59, 331
BtsIMutI	CAGTG	2 cut(s)	59, 331
Cac8I	GCNNGC	8 cut(s)	108, 118, 316, 338, 410, 417, 423, 726
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	6 cut(s)	90, 269, 293, 306, 421, 427
Cfr10I	RCCGGY	2 cut(s)	106, 724
Cfr13I	GGNCC	3 cut(s)	63, 64, 817
CseI	GACGC	2 cut(s)	101, 583
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	3 cut(s)	363, 791, 814
CviQI	GTAC	1 cut(s)	632
DpnI	GATC	3 cut(s)	71, 163, 285
DpnII	GATC	3 cut(s)	69, 161, 283
DraIII	CACNNNGTG	2 cut(s)	379, 571
DriI	GACNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	236, 253
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	2 cut(s)	236, 253
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	817
Eco47III	AGCGCT	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	813
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	3 cut(s)	366, 794, 817
FaiI	YATR	9 cut(s)	364, 387, 560, 792, 815, 822, 852, 857, 859
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	3 cut(s)	362, 790, 813
FauI	CCCGC	2 cut(s)	691, 761
Fnu4HI	GCNGC	7 cut(s)	17, 20, 270, 273, 294, 413, 474
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	7 cut(s)	17, 20, 270, 273, 294, 413, 474
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	6 cut(s)	89, 268, 292, 305, 420, 426
GluI	GCNGC	7 cut(s)	17, 20, 270, 273, 294, 413, 474
GsaI	CCCAGC	2 cut(s)	581, 648
GsuI	CTGGAG	2 cut(s)	176, 825
HaeII	RGCGCY	2 cut(s)	422, 428
HaeIII	GGCC	5 cut(s)	47, 65, 116, 314, 412
HapII	CCGG	7 cut(s)	9, 67, 107, 311, 470, 725, 752
HgaI	GACGC	2 cut(s)	101, 583
HhaI	GCGC	6 cut(s)	90, 269, 293, 306, 421, 427
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	366, 794, 817
Hin6I	GCGC	6 cut(s)	88, 267, 291, 304, 419, 425
HinP1I	GCGC	6 cut(s)	88, 267, 291, 304, 419, 425
HinfI	GANTC	5 cut(s)	98, 254, 397, 748, 809
HpaII	CCGG	7 cut(s)	9, 67, 107, 311, 470, 725, 752
HphI	GGTGA	6 cut(s)	23, 167, 365, 458, 550, 635
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	6 cut(s)	28, 37, 103, 253, 838, 847
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	5 cut(s)	95, 154, 281, 655, 787
HpyAV	CCTTC	2 cut(s)	253, 766
HpyCH4IV	ACGT	2 cut(s)	570, 720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 278, 368, 418, 787
HpySE526I	ACGT	2 cut(s)	570, 720
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	366, 794, 817
HspAI	GCGC	6 cut(s)	88, 267, 291, 304, 419, 425
KroI	GCCGGC	2 cut(s)	106, 724
KroNI	GCCGGC	2 cut(s)	108, 726
Kzo9I	GATC	3 cut(s)	69, 161, 283
LmnI	GCTCC	5 cut(s)	103, 157, 200, 432, 641
Lsp1109I	GCAGC	2 cut(s)	3, 485
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	570, 720
MaeIII	GTNAC	2 cut(s)	402, 571
MalI	GATC	3 cut(s)	71, 163, 285
MboI	GATC	3 cut(s)	69, 161, 283
MboII	GAAGA	4 cut(s)	223, 240, 682, 806
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	107, 248
MmeI	TCCRAC	3 cut(s)	51, 81, 276
Mox20I	TGGCCA	1 cut(s)	116
MroNI	GCCGGC	2 cut(s)	106, 724
MscI	TGGCCA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	795
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	7 cut(s)	9, 67, 107, 311, 470, 725, 752
MspR9I	CCNGG	4 cut(s)	67, 311, 470, 804
MvaI	CCWGG	1 cut(s)	804
MvnI	CGCG	5 cut(s)	90, 267, 291, 306, 509
MwoI	GCNNNNNNNGC	5 cut(s)	151, 278, 368, 418, 787
NaeI	GCCGGC	2 cut(s)	108, 726
NciI	CCSGG	3 cut(s)	67, 311, 470
NcoI	CCATGG	1 cut(s)	813
NdeII	GATC	3 cut(s)	69, 161, 283
NgoMIV	GCCGGC	2 cut(s)	106, 724
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	366, 794, 817
NlaIV	GGNNCC	2 cut(s)	65, 105
NmeAIII	GCCGAG	3 cut(s)	73, 121, 159
NmuCI	GTSAC	2 cut(s)	402, 571
NspI	RCATGY	1 cut(s)	366
PdiI	GCCGGC	2 cut(s)	108, 726
PfeI	GAWTC	3 cut(s)	397, 748, 809
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	7 cut(s)	18, 21, 271, 274, 295, 414, 475
Ple19I	CGATCG	1 cut(s)	164
PleI	GAGTC	2 cut(s)	106, 248
PmaCI	CACGTG	1 cut(s)	571
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	2 cut(s)	106, 248
Ppu21I	YACGTR	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	802
PspCI	CACGTG	1 cut(s)	571
PspFI	CCCAGC	2 cut(s)	577, 644
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	2 cut(s)	65, 105
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	3 cut(s)	63, 64, 817
PstNI	CAGNNNCTG	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	164
RgaI	GCGATCGC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	1 cut(s)	795
SatI	GCNGC	7 cut(s)	17, 20, 270, 273, 294, 413, 474
Sau3AI	GATC	3 cut(s)	69, 161, 283
Sau96I	GGNCC	3 cut(s)	63, 64, 817
SchI	GAGTC	2 cut(s)	107, 248
ScrFI	CCNGG	4 cut(s)	67, 311, 470, 804
SduI	GDGCHC	1 cut(s)	67
SfaAI	GCGATCGC	1 cut(s)	164
SgfI	GCGATCGC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	1 cut(s)	795
Sse9I	AATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	4 cut(s)	65, 309, 468, 802
StyI	CCWWGG	1 cut(s)	813
TaiI	ACGT	2 cut(s)	573, 723
TaqI	TCGA	3 cut(s)	131, 501, 785
TasI	AATT	1 cut(s)	343
TauI	GCSGC	5 cut(s)	22, 272, 275, 296, 415
TfiI	GAWTC	3 cut(s)	397, 748, 809
TscAI	CASTG	2 cut(s)	59, 338
TseFI	GTSAC	2 cut(s)	402, 571
TseI	GCWGC	2 cut(s)	16, 473
Tsp45I	GTSAC	2 cut(s)	402, 571
TspDTI	ATGAA	1 cut(s)	807
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	2 cut(s)	59, 338
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	817
XceI	RCATGY	1 cut(s)	366
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.