Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014050

Physical Location & Seq

Genomic Coordinates Reverse (-)

5893518 .. 5894908

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016360

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTCCTAATTATTAAGAGATATGGCAACCACCGAACCGCACAATCAGAGTCGCAGACACAAAGCCCTATCCCCCAAACACCAAATTCACCACCACCATTTGCGGATACCATGCCGGCCGGCGAGCTCCGGCAGTCAGAGTCCTCGGAGGCCGAGGCCGAGGCCGAGCAGTGGCTGTGGGCCCAGATCAAAGCGGAGGCGCGGCGCGACGCCGAGTCGGAGCCGGCTCTGGCCAGCTATCTCTACTCGACCATCCTCTCGCACTCGTCGCTGGAGCGATCGCTGTCGTTTCACCTCGGCAACAAGCTCTGCTCCTCCACGCTCCTCTCCACCCTCCTCTACGACCTCTTCCTCAACACCTTCTCCTCCGACTCCTCCCTACGCGCCGCCGCCGTCGCCGATTTACGCGCCGTGCACGAGCGTGACCCCGCCTGCGTGTCCTTCTCTCACTGCTTGCTCAATTACAAGGGCTTCCTGGCGTGTCAGGCTCATCGTGTGGCACATAAGCTATGGATTCAGTCACGCAGGCCACTGGCGCTTGCGCTCCACTCGCGGATAGCTGACGTGTTCGCGGTGGATATTCACCCCGCGGCGAGGATCGGAAAAGGAGTGCTGTTCGACCACGCGACGGGAGTGGTGGTCGGGGAGACGGCGGTGATTGGAAACAACGTCTCCATACTCCACCATGTGACGCTTGGAGGGACAGGAAAGGCCGGAGGAGACAGGCATCCGAAGATTGGCGACGGCGTACTTATCGGAGCCGGTGCAACGATATTGGGGAATGTGAAGATTGGAGAGGGTGCGAAGATTGGGGCTGGGTCGGTGGTGCTTATTGACGTGCCAGCGAGGACTACGGCGGTGGGGAATCCCGCGAGGTTGGTTGGCGGGAAGGAGAAGCCGTCGAAGCATGAGGATGTGCCTGGAGAATCCATGGACCATACTTCGTTTATATCGGAGTGGTCTGACTATATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

326

Amino Acids

34.76

Weight (kDa)

6.56

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	59 - 163	1.4e-36	Serine acetyltransferase, N-terminal
Hexapep	PF00132	243 - 276	1.6e-11	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56760
fragaria_vesca	FvH4_1g07140
malus_domestica	MD02G1075800.v1.1 MD02G1238300.v1.1
prunus_persica	Prupe.7G212700_v2.0.a1
pyrus_communis	pycom02g20370 pycom02g21490
rosa_chinensis	RchiOBHm_Chr2g0093021
rosa_laevigata	RLG00000016360
rosa_multiflora	Rmu_sc0000965.1_g000024 Rmu_sc0007577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148610
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077300 Rh2BG078700 Rh2CG080900
rosa_wichuraiana	Rw2G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	9 cut(s)	202, 207, 384, 408, 553, 572, 590, 626, 872
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	2 cut(s)	117, 231
AcsI	RAATTY	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	210
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	1 cut(s)	750
AfiI	CCNNNNNNNGG	4 cut(s)	171, 594, 628, 737
AflIII	ACRYGT	1 cut(s)	564
AhdI	GACNNNNNGTC	1 cut(s)	214
AjiI	CACGTC	2 cut(s)	565, 838
AjnI	CCWGG	2 cut(s)	474, 919
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	5 cut(s)	127, 237, 307, 508, 560
AluI	AGCT	5 cut(s)	127, 237, 307, 508, 560
Alw21I	GWGCWC	2 cut(s)	129, 417
Alw26I	GTCTC	3 cut(s)	641, 676, 714
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	8 cut(s)	117, 150, 156, 162, 180, 231, 527, 711
ApaI	GGGCCC	1 cut(s)	184
ApaLI	GTGCAC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	85
AsiSI	GCGATCGC	1 cut(s)	281
AspLEI	GCGC	6 cut(s)	202, 207, 386, 410, 538, 544
AspS9I	GGNCC	4 cut(s)	4, 180, 181, 934
AsuHPI	GGTGA	4 cut(s)	81, 284, 575, 667
AvaII	GGWCC	2 cut(s)	4, 934
BaeGI	GKGCMC	2 cut(s)	184, 417
BalI	TGGCCA	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	129, 184
BauI	CACGAG	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	129, 417
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	6 cut(s)	377, 395, 666, 760, 870, 883
BciT130I	CCWGG	2 cut(s)	476, 921
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	641, 676, 714
BfoI	RGCGCY	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	4 cut(s)	203, 387, 390, 591
BlsI	GCNGC	4 cut(s)	204, 388, 391, 592
Bme1390I	CCNGG	2 cut(s)	476, 921
Bme18I	GGWCC	2 cut(s)	4, 934
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmgBI	CACGTC	2 cut(s)	565, 838
BmgT120I	GGNCC	4 cut(s)	4, 180, 181, 934
BmiI	GGNNCC	3 cut(s)	182, 222, 760
BmrFI	CCNGG	2 cut(s)	476, 921
BmsI	GCATC	1 cut(s)	736
BpmI	CTGGAG	2 cut(s)	293, 942
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	6 cut(s)	144, 153, 159, 295, 588, 930
BsaXI	ACNNNNNCTCC	8 cut(s)	347, 377, 624, 654, 656, 686, 884, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 594, 628, 737
Bse118I	RCCGGY	4 cut(s)	115, 119, 223, 761
Bse1I	ACTGG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	476, 921
BseDI	CCNNGG	6 cut(s)	144, 153, 159, 295, 588, 930
BseGI	GGATG	3 cut(s)	252, 727, 919
BseLI	CCNNNNNNNGG	4 cut(s)	171, 594, 628, 737
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	6 cut(s)	304, 314, 326, 355, 364, 732
BseSI	GKGCMC	2 cut(s)	184, 417
BseX3I	CGGCCG	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	815
Bsh1236I	CGCG	9 cut(s)	202, 207, 384, 408, 553, 572, 590, 626, 872
Bsh1285I	CGRYCG	2 cut(s)	120, 281
BshFI	GGCC	8 cut(s)	119, 152, 158, 164, 182, 233, 529, 713
BsiEI	CGRYCG	2 cut(s)	120, 281
BsiHKAI	GWGCWC	2 cut(s)	129, 417
BsiSI	CCGG	6 cut(s)	116, 120, 130, 224, 714, 762
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	4 cut(s)	171, 594, 628, 737
BsmAI	GTCTC	3 cut(s)	641, 676, 714
BsmBI	CGTCTC	2 cut(s)	641, 676
BsmFI	GGGAC	1 cut(s)	715
BsnI	GGCC	8 cut(s)	119, 152, 158, 164, 182, 233, 529, 713
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	129, 184, 417
Bsp143I	GATC	3 cut(s)	186, 278, 597
Bsp19I	CCATGG	1 cut(s)	930
BspANI	GGCC	8 cut(s)	119, 152, 158, 164, 182, 233, 529, 713
BspFNI	CGCG	9 cut(s)	202, 207, 384, 408, 553, 572, 590, 626, 872
BspLI	GGNNCC	3 cut(s)	182, 222, 760
BspPI	GGATC	1 cut(s)	605
BsrFI	RCCGGY	4 cut(s)	115, 119, 223, 761
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	4 cut(s)	115, 119, 223, 761
BssECI	CCNNGG	6 cut(s)	144, 153, 159, 295, 588, 930
BssMI	GATC	3 cut(s)	186, 278, 597
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	930
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	476, 921
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	210
BstDSI	CCRYGG	2 cut(s)	588, 930
BstF5I	GGATG	3 cut(s)	252, 727, 919
BstFNI	CGCG	9 cut(s)	202, 207, 384, 408, 553, 572, 590, 626, 872
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	6 cut(s)	202, 207, 386, 410, 538, 544
BstKTI	GATC	3 cut(s)	189, 281, 600
BstMAI	GTCTC	3 cut(s)	641, 676, 714
BstMBI	GATC	3 cut(s)	186, 278, 597
BstMCI	CGRYCG	2 cut(s)	120, 281
BstMWI	GCNNNNNNNGC	6 cut(s)	268, 395, 485, 535, 550, 904
BstNI	CCWGG	2 cut(s)	476, 921
BstSCI	CCNGG	2 cut(s)	474, 919
BstSLI	GKGCMC	2 cut(s)	184, 417
BstUI	CGCG	9 cut(s)	202, 207, 384, 408, 553, 572, 590, 626, 872
BstZI	CGGCCG	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	8 cut(s)	119, 152, 158, 164, 182, 233, 529, 713
BtgI	CCRYGG	2 cut(s)	588, 930
BtrI	CACGTC	2 cut(s)	565, 838
BtsCI	GGATG	3 cut(s)	252, 727, 919
BtsI	GCAGTG	2 cut(s)	176, 448
BtsIMutI	CAGTG	3 cut(s)	176, 448, 530
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	6 cut(s)	202, 207, 386, 410, 538, 544
Cfr10I	RCCGGY	4 cut(s)	115, 119, 223, 761
Cfr13I	GGNCC	4 cut(s)	4, 180, 181, 934
Cfr42I	CCGCGG	1 cut(s)	591
CseI	GACGC	2 cut(s)	218, 700
Csp6I	GTAC	1 cut(s)	749
CviAII	CATG	4 cut(s)	112, 686, 908, 931
CviQI	GTAC	1 cut(s)	749
DpnI	GATC	3 cut(s)	188, 280, 599
DpnII	GATC	3 cut(s)	186, 278, 597
DraIII	CACNNNGTG	1 cut(s)	688
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	2 cut(s)	117, 231
EagI	CGGCCG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	353
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	930
Eco24I	GRGCYC	2 cut(s)	129, 184
Eco47I	GGWCC	2 cut(s)	4, 934
Eco52I	CGGCCG	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	474, 919
EcoT14I	CCWWGG	1 cut(s)	930
EcoT38I	GRGCYC	2 cut(s)	129, 184
ErhI	CCWWGG	1 cut(s)	930
Esp3I	CGTCTC	2 cut(s)	641, 676
FaeI	CATG	4 cut(s)	115, 689, 911, 934
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	4 cut(s)	111, 685, 907, 930
FauI	CCCGC	4 cut(s)	436, 595, 877, 878
Fnu4HI	GCNGC	4 cut(s)	203, 387, 390, 591
FokI	GGATG	3 cut(s)	239, 714, 926
FriOI	GRGCYC	2 cut(s)	129, 184
Fsp4HI	GCNGC	4 cut(s)	203, 387, 390, 591
GlaI	GCGC	6 cut(s)	201, 206, 385, 409, 537, 543
GluI	GCNGC	4 cut(s)	203, 387, 390, 591
GsaI	CCCAGC	1 cut(s)	819
GsuI	CTGGAG	2 cut(s)	293, 942
HaeII	RGCGCY	1 cut(s)	539
HaeIII	GGCC	8 cut(s)	119, 152, 158, 164, 182, 233, 529, 713
HapII	CCGG	6 cut(s)	116, 120, 130, 224, 714, 762
HgaI	GACGC	2 cut(s)	218, 700
HhaI	GCGC	6 cut(s)	202, 207, 386, 410, 538, 544
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	4 cut(s)	115, 689, 911, 934
Hin6I	GCGC	6 cut(s)	200, 205, 384, 408, 536, 542
HinP1I	GCGC	6 cut(s)	200, 205, 384, 408, 536, 542
HinfI	GANTC	7 cut(s)	50, 140, 215, 371, 514, 865, 926
HpaII	CCGG	6 cut(s)	116, 120, 130, 224, 714, 762
HphI	GGTGA	4 cut(s)	81, 284, 575, 667
Hpy166II	GTNNAC	1 cut(s)	415
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	6 cut(s)	212, 271, 398, 631, 746, 904
HpyAV	CCTTC	3 cut(s)	370, 451, 883
HpyCH4IV	ACGT	3 cut(s)	564, 669, 837
HpyCH4V	TGCA	2 cut(s)	415, 767
HpyF10VI	GCNNNNNNNGC	6 cut(s)	268, 395, 485, 535, 550, 904
HpySE526I	ACGT	3 cut(s)	564, 669, 837
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	115, 689, 911, 934
HspAI	GCGC	6 cut(s)	200, 205, 384, 408, 536, 542
KroI	GCCGGC	3 cut(s)	115, 119, 223
KroNI	GCCGGC	3 cut(s)	117, 121, 225
KspI	CCGCGG	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	186, 278, 597
LmnI	GCTCC	7 cut(s)	132, 220, 274, 317, 327, 549, 758
LweI	GCATC	1 cut(s)	736
MaeII	ACGT	3 cut(s)	564, 669, 837
MaeIII	GTNAC	3 cut(s)	422, 519, 688
MalI	GATC	3 cut(s)	188, 280, 599
MboI	GATC	3 cut(s)	186, 278, 597
MboII	GAAGA	4 cut(s)	340, 745, 799, 817
MhlI	GDGCHC	3 cut(s)	129, 184, 417
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	3 cut(s)	9, 85, 460
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	4 cut(s)	59, 149, 224, 365
MmeI	TCCRAC	2 cut(s)	198, 393
Mox20I	TGGCCA	1 cut(s)	233
MroNI	GCCGGC	3 cut(s)	115, 119, 223
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	2 cut(s)	420, 912
Msp20I	TGGCCA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	6 cut(s)	116, 120, 130, 224, 714, 762
MspR9I	CCNGG	2 cut(s)	476, 921
MteI	GCGCNGCGC	1 cut(s)	203
MvaI	CCWGG	2 cut(s)	476, 921
MvnI	CGCG	9 cut(s)	202, 207, 384, 408, 553, 572, 590, 626, 872
MwoI	GCNNNNNNNGC	6 cut(s)	268, 395, 485, 535, 550, 904
NaeI	GCCGGC	3 cut(s)	117, 121, 225
NcoI	CCATGG	1 cut(s)	930
NdeII	GATC	3 cut(s)	186, 278, 597
NgoMIV	GCCGGC	3 cut(s)	115, 119, 223
NlaIII	CATG	4 cut(s)	115, 689, 911, 934
NlaIV	GGNNCC	3 cut(s)	182, 222, 760
NmeAIII	GCCGAG	5 cut(s)	178, 184, 190, 238, 276
NmuCI	GTSAC	3 cut(s)	422, 519, 688
OliI	CACNNNNGTG	1 cut(s)	420
PdiI	GCCGGC	3 cut(s)	117, 121, 225
PfeI	GAWTC	3 cut(s)	514, 865, 926
PkrI	GCNGC	4 cut(s)	204, 388, 391, 592
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	4 cut(s)	58, 148, 223, 365
PpsI	GAGTC	4 cut(s)	58, 148, 223, 365
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	474, 919
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	2 cut(s)	474, 919
PspN4I	GGNNCC	3 cut(s)	182, 222, 760
PspOMI	GGGCCC	1 cut(s)	180
PspPI	GGNCC	4 cut(s)	4, 180, 181, 934
PstNI	CAGNNNCTG	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	281
RgaI	GCGATCGC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	750
RsaNI	GTAC	1 cut(s)	749
RseI	CAYNNNNRTG	2 cut(s)	420, 912
SacI	GAGCTC	1 cut(s)	129
SacII	CCGCGG	1 cut(s)	591
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	4 cut(s)	203, 387, 390, 591
Sau3AI	GATC	3 cut(s)	186, 278, 597
Sau96I	GGNCC	4 cut(s)	4, 180, 181, 934
SchI	GAGTC	4 cut(s)	59, 149, 224, 365
ScrFI	CCNGG	2 cut(s)	476, 921
SduI	GDGCHC	3 cut(s)	129, 184, 417
SfaAI	GCGATCGC	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	736
Sfr303I	CCGCGG	1 cut(s)	591
SgfI	GCGATCGC	1 cut(s)	281
SgrBI	CCGCGG	1 cut(s)	591
SinI	GGWCC	2 cut(s)	4, 934
SmiMI	CAYNNNNRTG	2 cut(s)	420, 912
Sse9I	AATT	3 cut(s)	9, 85, 460
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	474, 919
StyI	CCWWGG	1 cut(s)	930
TaiI	ACGT	3 cut(s)	567, 672, 840
TaqI	TCGA	3 cut(s)	248, 618, 902
TasI	AATT	3 cut(s)	9, 85, 460
TauI	GCSGC	4 cut(s)	205, 389, 392, 593
TfiI	GAWTC	3 cut(s)	514, 865, 926
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	3 cut(s)	176, 455, 537
TseFI	GTSAC	3 cut(s)	422, 519, 688
Tsp45I	GTSAC	3 cut(s)	422, 519, 688
TspRI	CASTG	3 cut(s)	176, 455, 537
VneI	GTGCAC	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	4, 934
XapI	RAATTY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.