Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007577.1

Orthogroup ID

OG0014050

Physical Location & Seq

Genomic Coordinates Forward (+)

347 .. 1603

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgccggccggcgagctccggcagtcagagccctcggaggccgaggccgagcagtggctgtgggcccagatcaaagcggaggcgcggcgcgacgccgagtcggagccggctctggccagctatctctactcgaccatcctctcgcactcgtcgctggagcgatcgctgtcgtttcacctcggcaacaagctctgctcctccacgctcctctccactctcctctacgacctcttcctcaacaccttctcctccgactcatccctacgcgccgccgccgtcgccgatttacgcgccgtgcacgagcgtgaccccgcctgcgtgtccttctcccactgcttgctcaattacaagggcttcctggcgtgtcagagcattgaaactcggccggtttcggagcttgaatactcacatttgcgtgatttcaatactcgtaggccactggcgcttgcgctccactcgcggatagccgacgtgttcgcggtggatattcaccccgcggcgaggatcggaaaaggggtgctgttcgaccacgcgacgggagtggtggtcggggagacggcggtgataggaaacaacgtctccatactccaccacgtgacgcttggagggacaggaaaggccggcggagacaggcatccgaagatcggcgacggggtacttatcggggccggtgcaacgatattggggaatgtgaagattggagagggtgcgaagattggggctgggtcggtggtgcttattgacgtgccggcgaggactacggcggtggggaatcctgcgaggttggttggcgggaaggagaagccgtcgaagcatgaggatgtgcctggagaatccatggaccatacttcgtttatatcggagtggtctgactatattatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

294

Amino Acids

31.43

Weight (kDa)

5.99

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56760
fragaria_vesca	FvH4_1g07140
malus_domestica	MD02G1075800.v1.1 MD02G1238300.v1.1
prunus_persica	Prupe.7G212700_v2.0.a1
pyrus_communis	pycom02g20370 pycom02g21490
rosa_chinensis	RchiOBHm_Chr2g0093021
rosa_laevigata	RLG00000016360
rosa_multiflora	Rmu_sc0000965.1_g000024 Rmu_sc0007577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148610
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077300 Rh2BG078700 Rh2CG080900
rosa_wichuraiana	Rw2G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	8 cut(s)	85, 90, 267, 291, 460, 479, 497, 533
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	3 cut(s)	6, 114, 383
AcvI	CACGTG	1 cut(s)	595
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	595
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	4 cut(s)	54, 501, 535, 644
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	3 cut(s)	377, 401, 424
AhdI	GACNNNNNGTC	1 cut(s)	97
AjiI	CACGTC	2 cut(s)	472, 745
AjnI	CCWGG	2 cut(s)	357, 826
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	16, 120, 190, 397
AluI	AGCT	4 cut(s)	16, 120, 190, 397
Alw21I	GWGCWC	2 cut(s)	18, 300
Alw26I	GTCTC	3 cut(s)	548, 583, 621
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	9 cut(s)	6, 39, 45, 63, 114, 383, 434, 618, 666
ApaI	GGGCCC	1 cut(s)	67
ApaLI	GTGCAC	1 cut(s)	296
AsiSI	GCGATCGC	1 cut(s)	164
AspLEI	GCGC	6 cut(s)	85, 90, 269, 293, 445, 451
AspS9I	GGNCC	4 cut(s)	63, 64, 666, 841
AsuHPI	GGTGA	3 cut(s)	167, 482, 574
AvaII	GGWCC	1 cut(s)	841
BaeGI	GKGCMC	2 cut(s)	67, 300
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	3 cut(s)	18, 33, 67
BauI	CACGAG	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	18, 300
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	5 cut(s)	260, 278, 573, 777, 790
BciT130I	CCWGG	2 cut(s)	359, 828
BcoDI	GTCTC	3 cut(s)	548, 583, 621
BfoI	RGCGCY	1 cut(s)	446
BisI	GCNGC	4 cut(s)	86, 270, 273, 498
BlsI	GCNGC	4 cut(s)	87, 271, 274, 499
Bme1390I	CCNGG	2 cut(s)	359, 828
Bme18I	GGWCC	1 cut(s)	841
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgBI	CACGTC	2 cut(s)	472, 745
BmgT120I	GGNCC	4 cut(s)	63, 64, 666, 841
BmiI	GGNNCC	3 cut(s)	65, 105, 667
BmrFI	CCNGG	2 cut(s)	359, 828
BmsI	GCATC	1 cut(s)	643
BpmI	CTGGAG	2 cut(s)	176, 849
BsaAI	YACGTR	1 cut(s)	595
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	5 cut(s)	33, 42, 178, 495, 837
BsaXI	ACNNNNNCTCC	8 cut(s)	230, 260, 531, 561, 563, 593, 791, 821
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 501, 535, 644
Bse118I	RCCGGY	7 cut(s)	4, 8, 106, 385, 620, 668, 748
Bse1I	ACTGG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	359, 828
BseDI	CCNNGG	5 cut(s)	33, 42, 178, 495, 837
BseGI	GGATG	4 cut(s)	135, 257, 634, 826
BseLI	CCNNNNNNNGG	4 cut(s)	54, 501, 535, 644
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	4 cut(s)	187, 197, 209, 238
BseSI	GKGCMC	2 cut(s)	67, 300
BseX3I	CGGCCG	2 cut(s)	6, 383
BseYI	CCCAGC	1 cut(s)	722
Bsh1236I	CGCG	8 cut(s)	85, 90, 267, 291, 460, 479, 497, 533
Bsh1285I	CGRYCG	3 cut(s)	9, 164, 386
BshFI	GGCC	9 cut(s)	8, 41, 47, 65, 116, 385, 436, 620, 668
BsiEI	CGRYCG	3 cut(s)	9, 164, 386
BsiHKAI	GWGCWC	2 cut(s)	18, 300
BsiSI	CCGG	8 cut(s)	5, 9, 19, 107, 386, 621, 669, 749
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	4 cut(s)	54, 501, 535, 644
BsmAI	GTCTC	3 cut(s)	548, 583, 621
BsmBI	CGTCTC	2 cut(s)	548, 583
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	9 cut(s)	8, 41, 47, 65, 116, 385, 436, 620, 668
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	4 cut(s)	18, 33, 67, 300
Bsp143I	GATC	4 cut(s)	69, 161, 504, 642
Bsp19I	CCATGG	1 cut(s)	837
BspANI	GGCC	9 cut(s)	8, 41, 47, 65, 116, 385, 436, 620, 668
BspFNI	CGCG	8 cut(s)	85, 90, 267, 291, 460, 479, 497, 533
BspLI	GGNNCC	3 cut(s)	65, 105, 667
BspPI	GGATC	1 cut(s)	512
BsrFI	RCCGGY	7 cut(s)	4, 8, 106, 385, 620, 668, 748
BsrI	ACTGG	1 cut(s)	444
BssAI	RCCGGY	7 cut(s)	4, 8, 106, 385, 620, 668, 748
BssECI	CCNNGG	5 cut(s)	33, 42, 178, 495, 837
BssMI	GATC	4 cut(s)	69, 161, 504, 642
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	837
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	359, 828
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	595
BstDSI	CCRYGG	2 cut(s)	495, 837
BstF5I	GGATG	4 cut(s)	135, 257, 634, 826
BstFNI	CGCG	8 cut(s)	85, 90, 267, 291, 460, 479, 497, 533
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	6 cut(s)	85, 90, 269, 293, 445, 451
BstKTI	GATC	4 cut(s)	72, 164, 507, 645
BstMAI	GTCTC	3 cut(s)	548, 583, 621
BstMBI	GATC	4 cut(s)	69, 161, 504, 642
BstMCI	CGRYCG	3 cut(s)	9, 164, 386
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 151, 278, 442, 457, 811
BstNI	CCWGG	2 cut(s)	359, 828
BstSCI	CCNGG	2 cut(s)	357, 826
BstSLI	GKGCMC	2 cut(s)	67, 300
BstUI	CGCG	8 cut(s)	85, 90, 267, 291, 460, 479, 497, 533
BstZI	CGGCCG	2 cut(s)	6, 383
BsuRI	GGCC	9 cut(s)	8, 41, 47, 65, 116, 385, 436, 620, 668
BtgI	CCRYGG	2 cut(s)	495, 837
BtrI	CACGTC	2 cut(s)	472, 745
BtsCI	GGATG	4 cut(s)	135, 257, 634, 826
BtsI	GCAGTG	2 cut(s)	59, 331
BtsIMutI	CAGTG	3 cut(s)	59, 331, 437
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	6 cut(s)	85, 90, 269, 293, 445, 451
Cfr10I	RCCGGY	7 cut(s)	4, 8, 106, 385, 620, 668, 748
Cfr13I	GGNCC	4 cut(s)	63, 64, 666, 841
Cfr42I	CCGCGG	1 cut(s)	498
CseI	GACGC	2 cut(s)	101, 607
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	2 cut(s)	815, 838
CviQI	GTAC	1 cut(s)	656
DpnI	GATC	4 cut(s)	71, 163, 506, 644
DpnII	GATC	4 cut(s)	69, 161, 504, 642
DraIII	CACNNNGTG	1 cut(s)	595
DriI	GACNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	3 cut(s)	6, 114, 383
EagI	CGGCCG	2 cut(s)	6, 383
Eam1104I	CTCTTC	1 cut(s)	236
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	16
EclXI	CGGCCG	2 cut(s)	6, 383
Eco130I	CCWWGG	1 cut(s)	837
Eco24I	GRGCYC	3 cut(s)	18, 33, 67
Eco47I	GGWCC	1 cut(s)	841
Eco52I	CGGCCG	2 cut(s)	6, 383
Eco53kI	GAGCTC	1 cut(s)	16
Eco72I	CACGTG	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	357, 826
EcoT14I	CCWWGG	1 cut(s)	837
EcoT38I	GRGCYC	3 cut(s)	18, 33, 67
ErhI	CCWWGG	1 cut(s)	837
Esp3I	CGTCTC	2 cut(s)	548, 583
FaeI	CATG	2 cut(s)	818, 841
FaiI	YATR	8 cut(s)	584, 816, 839, 846, 857, 876, 881, 883
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	2 cut(s)	814, 837
FauI	CCCGC	3 cut(s)	319, 502, 785
Fnu4HI	GCNGC	4 cut(s)	86, 270, 273, 498
FokI	GGATG	4 cut(s)	122, 244, 621, 833
FriOI	GRGCYC	3 cut(s)	18, 33, 67
Fsp4HI	GCNGC	4 cut(s)	86, 270, 273, 498
GlaI	GCGC	6 cut(s)	84, 89, 268, 292, 444, 450
GluI	GCNGC	4 cut(s)	86, 270, 273, 498
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	2 cut(s)	176, 849
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	9 cut(s)	8, 41, 47, 65, 116, 385, 436, 620, 668
HapII	CCGG	8 cut(s)	5, 9, 19, 107, 386, 621, 669, 749
HgaI	GACGC	2 cut(s)	101, 607
HhaI	GCGC	6 cut(s)	85, 90, 269, 293, 445, 451
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	818, 841
Hin6I	GCGC	6 cut(s)	83, 88, 267, 291, 443, 449
HinP1I	GCGC	6 cut(s)	83, 88, 267, 291, 443, 449
HinfI	GANTC	4 cut(s)	98, 254, 772, 833
HpaII	CCGG	8 cut(s)	5, 9, 19, 107, 386, 621, 669, 749
HphI	GGTGA	3 cut(s)	167, 482, 574
Hpy166II	GTNNAC	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	7 cut(s)	95, 154, 281, 473, 538, 653, 811
HpyAV	CCTTC	3 cut(s)	253, 334, 790
HpyCH4IV	ACGT	4 cut(s)	471, 576, 594, 744
HpyCH4V	TGCA	2 cut(s)	298, 674
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 151, 278, 442, 457, 811
HpySE526I	ACGT	4 cut(s)	471, 576, 594, 744
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	818, 841
HspAI	GCGC	6 cut(s)	83, 88, 267, 291, 443, 449
KroI	GCCGGC	5 cut(s)	4, 8, 106, 620, 748
KroNI	GCCGGC	5 cut(s)	6, 10, 108, 622, 750
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	69, 161, 504, 642
LmnI	GCTCC	7 cut(s)	21, 103, 157, 200, 210, 394, 456
LweI	GCATC	1 cut(s)	643
MaeII	ACGT	4 cut(s)	471, 576, 594, 744
MaeIII	GTNAC	2 cut(s)	305, 595
MalI	GATC	4 cut(s)	71, 163, 506, 644
MboI	GATC	4 cut(s)	69, 161, 504, 642
MboII	GAAGA	4 cut(s)	223, 652, 706, 724
MhlI	GDGCHC	4 cut(s)	18, 33, 67, 300
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	107, 248
MmeI	TCCRAC	2 cut(s)	81, 276
Mox20I	TGGCCA	1 cut(s)	116
MroNI	GCCGGC	5 cut(s)	4, 8, 106, 620, 748
MscI	TGGCCA	1 cut(s)	116
MslI	CAYNNNNRTG	3 cut(s)	303, 414, 819
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	8 cut(s)	5, 9, 19, 107, 386, 621, 669, 749
MspR9I	CCNGG	2 cut(s)	359, 828
MteI	GCGCNGCGC	1 cut(s)	86
MvaI	CCWGG	2 cut(s)	359, 828
MvnI	CGCG	8 cut(s)	85, 90, 267, 291, 460, 479, 497, 533
MwoI	GCNNNNNNNGC	6 cut(s)	28, 151, 278, 442, 457, 811
NaeI	GCCGGC	5 cut(s)	6, 10, 108, 622, 750
NcoI	CCATGG	1 cut(s)	837
NdeII	GATC	4 cut(s)	69, 161, 504, 642
NgoMIV	GCCGGC	5 cut(s)	4, 8, 106, 620, 748
NlaIII	CATG	2 cut(s)	818, 841
NlaIV	GGNNCC	3 cut(s)	65, 105, 667
NmeAIII	GCCGAG	5 cut(s)	67, 73, 121, 159, 361
NmuCI	GTSAC	2 cut(s)	305, 595
OliI	CACNNNNGTG	1 cut(s)	303
PdiI	GCCGGC	5 cut(s)	6, 10, 108, 622, 750
PfeI	GAWTC	2 cut(s)	772, 833
PkrI	GCNGC	4 cut(s)	87, 271, 274, 499
Ple19I	CGATCG	1 cut(s)	164
PleI	GAGTC	2 cut(s)	106, 248
PmaCI	CACGTG	1 cut(s)	595
PmlI	CACGTG	1 cut(s)	595
PpsI	GAGTC	2 cut(s)	106, 248
Ppu21I	YACGTR	1 cut(s)	595
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	357, 826
PspCI	CACGTG	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	357, 826
PspN4I	GGNNCC	3 cut(s)	65, 105, 667
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	4 cut(s)	63, 64, 666, 841
PstNI	CAGNNNCTG	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	164
RgaI	GCGATCGC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
RseI	CAYNNNNRTG	3 cut(s)	303, 414, 819
SacI	GAGCTC	1 cut(s)	18
SacII	CCGCGG	1 cut(s)	498
SatI	GCNGC	4 cut(s)	86, 270, 273, 498
Sau3AI	GATC	4 cut(s)	69, 161, 504, 642
Sau96I	GGNCC	4 cut(s)	63, 64, 666, 841
SchI	GAGTC	2 cut(s)	107, 248
ScrFI	CCNGG	2 cut(s)	359, 828
SduI	GDGCHC	4 cut(s)	18, 33, 67, 300
SfaAI	GCGATCGC	1 cut(s)	164
SfaNI	GCATC	1 cut(s)	643
Sfr303I	CCGCGG	1 cut(s)	498
SgfI	GCGATCGC	1 cut(s)	164
SgrBI	CCGCGG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	841
SmiMI	CAYNNNNRTG	3 cut(s)	303, 414, 819
Sse9I	AATT	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	357, 826
StyI	CCWWGG	1 cut(s)	837
TaiI	ACGT	4 cut(s)	474, 579, 597, 747
TaqI	TCGA	3 cut(s)	131, 525, 809
TasI	AATT	1 cut(s)	343
TauI	GCSGC	4 cut(s)	88, 272, 275, 500
TfiI	GAWTC	2 cut(s)	772, 833
TscAI	CASTG	3 cut(s)	59, 338, 444
TseFI	GTSAC	2 cut(s)	305, 595
Tsp45I	GTSAC	2 cut(s)	305, 595
TspRI	CASTG	3 cut(s)	59, 338, 444
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.