Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014050

Physical Location & Seq

Genomic Coordinates Reverse (-)

6019137 .. 6020667

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1075800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCAGCCGGCGATCTCAGGTGCGCAGAGTGGTCCTCGGACGCCGAGTGGGAGGCTTGGGTGTGGACCCAGATCAAAGCCGAGGCGCGGGGCGATGCCGAGTCGGAGCCGGCTCTGGCCAGCTACCTCTACTCCACCATACTCTCCCACTCGTCGCTGGAGCGGTCGCTGTCGTTTCACCTGGGGAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCCTCAACACCTTCTCCTCCGACCCCTCCCTACGCGCCGCTGCCGTCGCGGATCTCTGCGCGGCCCACGAGCGCGACCCCGCTTGCGTCTCGTTTTCCCACTGCCTGCTCAATTACAAGGGCTTCCTGGCCTGTCAGGCGCATCGAGTGGCGCACAAGCTGTGGATCCAGAACCGTAGGCCGCTGGCGCTTGCGCTGCACTCGAGGATCGCAGACGTGTTCGCGGTGGACATACACCCAGCGGCGAGGATCGGAAAGGGGGTGCTGTTCGACCACGCGACAGGGGTGGTGGTGGGGGAGACGGCGGTGATCGGGAACAACGTGTCGATACTCCACCACGTGACGCTGGGTGGCACCGGGAAAGCCGGCGGAGACCGGCACCCGAAGATTGGCGATGGGGTTTTGATCGGTGCGAGCGCGACGATTTTGGGGAATGTGAAGATTGGGGAGGGCGCAAAGATTGGGGCGGGGTCGGTTGTGCTGATTGATGTTCCTCCGAGGACCACGGCGGTGGGAAATCCGGCGAGGTTGGTTGGCGGGAAGGAACGGCCGTCGAAGCACGAGGATGTGCCTGGCCAGTCCATGGATCACACCTCGTTTATGTCGGAGTGGTCCGACTATATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

288

Amino Acids

30.62

Weight (kDa)

6.38

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	21 - 125	3e-36	Serine acetyltransferase, N-terminal
Hexapep	PF00132	205 - 238	3.3e-11	Bacterial transferase hexapeptide (six repeats)
Hexapep_2	PF14602	207 - 238	1e-05	Hexapeptide repeat of succinyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56760
fragaria_vesca	FvH4_1g07140
malus_domestica	MD02G1075800.v1.1 MD02G1238300.v1.1
prunus_persica	Prupe.7G212700_v2.0.a1
pyrus_communis	pycom02g20370 pycom02g21490
rosa_chinensis	RchiOBHm_Chr2g0093021
rosa_laevigata	RLG00000016360
rosa_multiflora	Rmu_sc0000965.1_g000024 Rmu_sc0007577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148610
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077300 Rh2BG078700 Rh2CG080900
rosa_wichuraiana	Rw2G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AccB1I	GGYRCC	2 cut(s)	587, 612
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	163
AccII	CGCG	8 cut(s)	88, 270, 284, 296, 309, 458, 512, 653
AclWI	GGATC	6 cut(s)	294, 394, 407, 449, 491, 828
AcoI	YGGCCR	3 cut(s)	117, 782, 808
AcvI	CACGTG	1 cut(s)	574
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	574
AfiI	CCNNNNNNNGG	3 cut(s)	87, 623, 817
AflIII	ACRYGT	2 cut(s)	450, 555
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	3 cut(s)	180, 360, 805
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	3 cut(s)	123, 193, 394
AluI	AGCT	3 cut(s)	123, 193, 394
Alw26I	GTCTC	3 cut(s)	328, 527, 600
AlwI	GGATC	6 cut(s)	294, 394, 407, 449, 491, 828
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	6 cut(s)	117, 297, 363, 413, 782, 808
ApeKI	GCWGC	2 cut(s)	275, 430
AspS9I	GGNCC	5 cut(s)	33, 66, 298, 735, 846
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	170, 553
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	4 cut(s)	33, 66, 735, 846
BalI	TGGCCA	2 cut(s)	119, 810
BamHI	GGATCC	1 cut(s)	399
BanI	GGYRCC	2 cut(s)	587, 612
BauI	CACGAG	2 cut(s)	302, 794
BbrPI	CACGTG	1 cut(s)	574
BbvI	GCAGC	2 cut(s)	262, 417
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	5 cut(s)	263, 552, 756, 769, 797
BciT130I	CCWGG	3 cut(s)	182, 362, 807
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	3 cut(s)	328, 527, 600
BfoI	RGCGCY	1 cut(s)	425
BglI	GCCNNNNNGGC	1 cut(s)	371
BisI	GCNGC	6 cut(s)	273, 276, 297, 416, 431, 477
BlsI	GCNGC	6 cut(s)	274, 277, 298, 417, 432, 478
Bme1390I	CCNGG	4 cut(s)	182, 362, 592, 807
Bme18I	GGWCC	4 cut(s)	33, 66, 735, 846
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	5 cut(s)	33, 66, 298, 735, 846
BmiI	GGNNCC	5 cut(s)	68, 108, 401, 589, 614
BmrFI	CCNGG	4 cut(s)	182, 362, 592, 807
BmsI	GCATC	2 cut(s)	85, 385
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	592
BsaAI	YACGTR	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	6 cut(s)	36, 81, 181, 731, 738, 816
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 623, 817
Bse118I	RCCGGY	4 cut(s)	8, 109, 599, 609
Bse1I	ACTGG	1 cut(s)	811
BseBI	CCWGG	3 cut(s)	182, 362, 807
BseDI	CCNNGG	6 cut(s)	36, 81, 181, 731, 738, 816
BseGI	GGATG	1 cut(s)	805
BseLI	CCNNNNNNNGG	3 cut(s)	87, 623, 817
BseMII	CTCAG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	4 cut(s)	190, 200, 212, 241
BseX3I	CGGCCG	1 cut(s)	782
BseXI	GCAGC	2 cut(s)	262, 417
BseYI	CCCAGC	2 cut(s)	472, 580
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	8 cut(s)	88, 270, 284, 296, 309, 458, 512, 653
Bsh1285I	CGRYCG	2 cut(s)	167, 785
BshFI	GGCC	6 cut(s)	119, 299, 365, 415, 784, 810
BshNI	GGYRCC	2 cut(s)	587, 612
BsiEI	CGRYCG	2 cut(s)	167, 785
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	6 cut(s)	9, 110, 591, 600, 610, 755
BslI	CCNNNNNNNGG	3 cut(s)	87, 623, 817
BsmAI	GTCTC	3 cut(s)	328, 527, 600
BsmBI	CGTCTC	2 cut(s)	328, 527
BsnI	GGCC	6 cut(s)	119, 299, 365, 415, 784, 810
Bso31I	GGTCTC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	436
Bsp143I	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
Bsp19I	CCATGG	1 cut(s)	816
BspANI	GGCC	6 cut(s)	119, 299, 365, 415, 784, 810
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	8 cut(s)	88, 270, 284, 296, 309, 458, 512, 653
BspLI	GGNNCC	5 cut(s)	68, 108, 401, 589, 614
BspPI	GGATC	6 cut(s)	294, 394, 407, 449, 491, 828
BspT107I	GGYRCC	2 cut(s)	587, 612
BspTNI	GGTCTC	1 cut(s)	600
BsrBI	CCGCTC	1 cut(s)	163
BsrFI	RCCGGY	4 cut(s)	8, 109, 599, 609
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	4 cut(s)	8, 109, 599, 609
BssECI	CCNNGG	6 cut(s)	36, 81, 181, 731, 738, 816
BssMI	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	2 cut(s)	302, 794
BssT1I	CCWWGG	1 cut(s)	816
Bst2BI	CACGAG	2 cut(s)	302, 794
Bst2UI	CCWGG	3 cut(s)	182, 362, 807
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	574
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	2 cut(s)	738, 816
BstF5I	GGATG	1 cut(s)	805
BstFNI	CGCG	8 cut(s)	88, 270, 284, 296, 309, 458, 512, 653
BstH2I	RGCGCY	1 cut(s)	425
BstKTI	GATC	9 cut(s)	16, 75, 289, 402, 444, 486, 546, 642, 823
BstMAI	GTCTC	3 cut(s)	328, 527, 600
BstMBI	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
BstMCI	CGRYCG	2 cut(s)	167, 785
BstMWI	GCNNNNNNNGC	5 cut(s)	281, 371, 421, 430, 790
BstNI	CCWGG	3 cut(s)	182, 362, 807
BstSCI	CCNGG	4 cut(s)	180, 360, 590, 805
BstUI	CGCG	8 cut(s)	88, 270, 284, 296, 309, 458, 512, 653
BstV1I	GCAGC	2 cut(s)	262, 417
BstX2I	RGATCY	2 cut(s)	286, 399
BstXI	CCANNNNNNTGG	1 cut(s)	745
BstYI	RGATCY	2 cut(s)	286, 399
BstZI	CGGCCG	1 cut(s)	782
BsuRI	GGCC	6 cut(s)	119, 299, 365, 415, 784, 810
BtgI	CCRYGG	2 cut(s)	738, 816
BtgZI	GCGATG	2 cut(s)	108, 642
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	805
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	334
Cfr10I	RCCGGY	4 cut(s)	8, 109, 599, 609
Cfr13I	GGNCC	5 cut(s)	33, 66, 298, 735, 846
CseI	GACGC	3 cut(s)	50, 310, 586
CviAII	CATG	1 cut(s)	817
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	9 cut(s)	15, 74, 288, 401, 443, 485, 545, 641, 822
DpnII	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
DraIII	CACNNNGTG	1 cut(s)	574
EaeI	YGGCCR	3 cut(s)	117, 782, 808
EagI	CGGCCG	1 cut(s)	782
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	618
EclXI	CGGCCG	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	600
Eco47I	GGWCC	4 cut(s)	33, 66, 735, 846
Eco52I	CGGCCG	1 cut(s)	782
Eco72I	CACGTG	1 cut(s)	574
Eco88I	CYCGRG	1 cut(s)	436
EcoRII	CCWGG	3 cut(s)	180, 360, 805
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	2 cut(s)	328, 527
FaeI	CATG	1 cut(s)	820
FaiI	YATR	7 cut(s)	140, 467, 818, 836, 855, 860, 862
FatI	CATG	1 cut(s)	816
FauI	CCCGC	4 cut(s)	81, 322, 694, 764
Fnu4HI	GCNGC	6 cut(s)	273, 276, 297, 416, 431, 477
FokI	GGATG	1 cut(s)	812
Fsp4HI	GCNGC	6 cut(s)	273, 276, 297, 416, 431, 477
FspI	TGCGCA	1 cut(s)	25
GluI	GCNGC	6 cut(s)	273, 276, 297, 416, 431, 477
GsaI	CCCAGC	2 cut(s)	476, 584
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	6 cut(s)	119, 299, 365, 415, 784, 810
HapII	CCGG	6 cut(s)	9, 110, 591, 600, 610, 755
HgaI	GACGC	3 cut(s)	50, 310, 586
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	820
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	6 cut(s)	9, 110, 591, 600, 610, 755
HphI	GGTGA	2 cut(s)	170, 553
Hpy166II	GTNNAC	2 cut(s)	66, 463
Hpy188I	TCNGA	7 cut(s)	40, 106, 256, 488, 732, 841, 850
Hpy188III	TCNNGA	2 cut(s)	403, 547
Hpy8I	GTNNAC	2 cut(s)	66, 463
Hpy99I	CGWCG	4 cut(s)	157, 284, 658, 790
HpyAV	CCTTC	2 cut(s)	256, 769
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	3 cut(s)	450, 555, 573
HpyCH4V	TGCA	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	5 cut(s)	281, 371, 421, 430, 790
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	3 cut(s)	450, 555, 573
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	820
KroI	GCCGGC	3 cut(s)	8, 109, 599
KroNI	GCCGGC	3 cut(s)	10, 111, 601
Kzo9I	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
LmnI	GCTCC	4 cut(s)	106, 160, 203, 225
Lsp1109I	GCAGC	2 cut(s)	262, 417
LweI	GCATC	2 cut(s)	85, 385
MaeII	ACGT	3 cut(s)	450, 555, 573
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	9 cut(s)	15, 74, 288, 401, 443, 485, 545, 641, 822
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
MboII	GAAGA	3 cut(s)	226, 631, 685
MflI	RGATCY	2 cut(s)	286, 399
MlsI	TGGCCA	2 cut(s)	119, 810
MluCI	AATT	1 cut(s)	346
MluNI	TGGCCA	2 cut(s)	119, 810
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	3 cut(s)	84, 279, 819
Mox20I	TGGCCA	2 cut(s)	119, 810
MroNI	GCCGGC	3 cut(s)	8, 109, 599
MscI	TGGCCA	2 cut(s)	119, 810
MslI	CAYNNNNRTG	2 cut(s)	743, 798
Msp20I	TGGCCA	2 cut(s)	119, 810
MspA1I	CMGCKG	3 cut(s)	275, 418, 476
MspI	CCGG	6 cut(s)	9, 110, 591, 600, 610, 755
MspR9I	CCNGG	4 cut(s)	182, 362, 592, 807
MvaI	CCWGG	3 cut(s)	182, 362, 807
MvnI	CGCG	8 cut(s)	88, 270, 284, 296, 309, 458, 512, 653
MwoI	GCNNNNNNNGC	5 cut(s)	281, 371, 421, 430, 790
NaeI	GCCGGC	3 cut(s)	10, 111, 601
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	1 cut(s)	816
NdeII	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
NgoMIV	GCCGGC	3 cut(s)	8, 109, 599
NlaIII	CATG	1 cut(s)	820
NlaIV	GGNNCC	5 cut(s)	68, 108, 401, 589, 614
NmeAIII	GCCGAG	3 cut(s)	70, 106, 124
NmuCI	GTSAC	1 cut(s)	574
NsbI	TGCGCA	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PdiI	GCCGGC	3 cut(s)	10, 111, 601
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	6 cut(s)	274, 277, 298, 417, 432, 478
PleI	GAGTC	1 cut(s)	109
PmaCI	CACGTG	1 cut(s)	574
PmlI	CACGTG	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	574
Psp6I	CCWGG	3 cut(s)	180, 360, 805
PspCI	CACGTG	1 cut(s)	574
PspFI	CCCAGC	2 cut(s)	472, 580
PspGI	CCWGG	3 cut(s)	180, 360, 805
PspN4I	GGNNCC	5 cut(s)	68, 108, 401, 589, 614
PspPI	GGNCC	5 cut(s)	33, 66, 298, 735, 846
PspXI	VCTCGAGB	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	286, 399
RseI	CAYNNNNRTG	2 cut(s)	743, 798
SatI	GCNGC	6 cut(s)	273, 276, 297, 416, 431, 477
Sau3AI	GATC	9 cut(s)	13, 72, 286, 399, 441, 483, 543, 639, 820
Sau96I	GGNCC	5 cut(s)	33, 66, 298, 735, 846
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	4 cut(s)	182, 362, 592, 807
SfaNI	GCATC	2 cut(s)	85, 385
Sfr274I	CTCGAG	1 cut(s)	436
SinI	GGWCC	4 cut(s)	33, 66, 735, 846
SlaI	CTCGAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	743, 798
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	346
StyD4I	CCNGG	4 cut(s)	180, 360, 590, 805
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	3 cut(s)	453, 558, 576
TaqI	TCGA	5 cut(s)	379, 437, 504, 560, 788
TasI	AATT	1 cut(s)	346
TauI	GCSGC	4 cut(s)	275, 299, 418, 479
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	2 cut(s)	275, 430
Tsp45I	GTSAC	1 cut(s)	574
TspRI	CASTG	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	817
VpaK11BI	GGWCC	4 cut(s)	33, 66, 735, 846
XhoI	CTCGAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.