AT5G58110

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013003
Physical Location & Seq
Forward (+)
23515150 .. 23516751
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58110.1

Sequence Viewer

Length: 591 bp
ATGGAGAGAGAGGAGGAGAAGACGAAAGAGGGCTCATCGTATAGGTACTGGGTGAGAGAAGCCACCTCAGACGCAGCTCCTCCTCCTCTGCCCCAAAAGCTCAGCAACAACGACGTCTCTCTCAATACTGCTCCTGCGTCCCTTGGCTCTCTCTGGAATCGGGCTGGCACTTGGGAGGAGAAGAGTCTCACCAAATGGGCTACTGACCGATTAAAGGAGCTGTTGGGATCAGTGGGTTCATTGCAGTTCTCTTCTGGAAAAGCTGAGATTATAGATGTTAACAGATGTGTTGGAGATGCTTTCTTAGTCACAGTTCGGAACAAGAAAAGAGTTGGCTATACTTACGAGCTTTCCCTTAAAGTTGAGGGAGAGTGGTCATTTGAAGAGAATATGAAGAAGGTGAAGGGGAGCCTCGAGATTCCAGAGTTTTCATTCGGCGAGCTTGATGATCTTGAGGTGGATGTGAAGCTCAGCGAAGACAAGGAGCTTTCCCAGCAGCTGAAGCAGCGGATTAAGTTGGATATGAAGCAGTTCTTGGAGCCTATACGCCTCAAACTCGGCCTGTTCGAACAGGAACTCAAAGATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

196

Amino Acids

22.44

Weight (kDa)

5.24

Isoelectric Point (pI)

25.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aha1_N PF09229 60 - 195 8.2e-29 Activator of Hsp90 ATPase, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58110
fragaria_vesca FvH4_4g00120
malus_domestica MD04G1000800.v1.1
prunus_persica Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1
pyrus_communis pycom04g00120
rosa_chinensis RchiOBHm_Chr4g0384721
rosa_laevigata RLG00000010277
rosa_multiflora Rmu_sc0004923.1_g000007
rosa_roxburghii Rroxscaffold_5G00332740
rosa_rugosa Rorug03G0297200
rosa_samantha Rh4AG000700 Rh4BG000600 Rh4CG000500
rosa_wichuraiana Rw1G017640 Rw4G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AciI CCGC 1 cut(s) 508
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 521
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 9 cut(s) 77, 100, 220, 263, 349, 442, 469, 487, 499
AluI AGCT 9 cut(s) 77, 100, 220, 263, 349, 442, 469, 487, 499
Alw26I GTCTC 2 cut(s) 121, 191
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 499
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 3 cut(s) 74, 496, 505
Asp700I GAANNNNTTC 1 cut(s) 530
AsuHPI GGTGA 3 cut(s) 64, 181, 412
AsuII TTCGAA 1 cut(s) 567
AvaI CYCGRG 1 cut(s) 413
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 26, 483
BbvI GCAGC 3 cut(s) 86, 508, 517
BcoDI GTCTC 2 cut(s) 121, 191
BisI GCNGC 3 cut(s) 75, 497, 506
BlpI GCTNAGC 2 cut(s) 101, 470
BlsI GCNGC 3 cut(s) 76, 498, 507
BmeT110I CYCGRG 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 410, 540
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 2 cut(s) 26, 483
Bpu1102I GCTNAGC 2 cut(s) 101, 470
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 4 cut(s) 81, 115, 255, 484
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 6 cut(s) 26, 29, 69, 72, 75, 191
BseXI GCAGC 3 cut(s) 86, 508, 517
BseYI CCCAGC 1 cut(s) 492
BshFI GGCC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 121, 191
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 561
BsoBI CYCGRG 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 227, 448
Bsp1720I GCTNAGC 2 cut(s) 101, 470
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 561
BspCNI CTCAG 4 cut(s) 80, 114, 256, 483
BspLI GGNNCC 2 cut(s) 410, 540
BspPI GGATC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 227, 448
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 3 cut(s) 176, 256, 378
BstACI GRCGYC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 166, 440
BstDEI CTNAG 5 cut(s) 67, 101, 264, 304, 470
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 2 cut(s) 230, 451
BstMAI GTCTC 2 cut(s) 121, 191
BstMBI GATC 2 cut(s) 227, 448
BstMWI GCNNNNNNNGC 4 cut(s) 97, 493, 502, 505
BstV1I GCAGC 3 cut(s) 86, 508, 517
BstV2I GAAGAC 2 cut(s) 26, 483
BsuRI GGCC 1 cut(s) 561
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 166, 440
CaiI CAGNNNCTG 1 cut(s) 499
CseI GACGC 2 cut(s) 80, 126
Csp6I GTAC 1 cut(s) 46
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 5 cut(s) 67, 101, 264, 304, 470
DpnI GATC 2 cut(s) 229, 450
DpnII GATC 2 cut(s) 227, 448
Eam1104I CTCTTC 3 cut(s) 176, 256, 378
EarI CTCTTC 3 cut(s) 176, 256, 378
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 121
FaiI YATR 6 cut(s) 42, 272, 339, 392, 524, 545
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 75, 497, 506
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 75, 497, 506
GluI GCNGC 3 cut(s) 75, 497, 506
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 1 cut(s) 561
HgaI GACGC 2 cut(s) 80, 126
Hin1I GRCGYC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 3 cut(s) 157, 184, 418
HpaI GTTAAC 1 cut(s) 280
HphI GGTGA 3 cut(s) 64, 181, 412
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 70, 318
Hpy188III TCNNGA 5 cut(s) 154, 255, 415, 422, 452
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 391, 397
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 493, 502, 505
HpyF3I CTNAG 5 cut(s) 67, 101, 264, 304, 470
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 227, 448
LmnI GCTCC 6 cut(s) 82, 136, 217, 408, 484, 538
LpnPI CCDG 9 cut(s) 34, 139, 147, 150, 240, 435, 506, 557, 575
Lsp1109I GCAGC 3 cut(s) 86, 508, 517
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 229, 450
MboI GATC 2 cut(s) 227, 448
MboII GAAGA 6 cut(s) 31, 193, 243, 395, 406, 488
MhlI GDGCHC 1 cut(s) 35
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 2 cut(s) 271, 498
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 4 cut(s) 212, 279, 357, 513
MspA1I CMGCKG 2 cut(s) 499, 508
MwoI GCNNNNNNNGC 4 cut(s) 97, 493, 502, 505
NdeII GATC 2 cut(s) 227, 448
NlaIV GGNNCC 2 cut(s) 410, 540
NmeAIII GCCGAG 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 307
NspV TTCGAA 1 cut(s) 567
PaeR7I CTCGAG 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 2 cut(s) 157, 418
PkrI GCNGC 3 cut(s) 76, 498, 507
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 492
PspN4I GGNNCC 2 cut(s) 410, 540
PstNI CAGNNNCTG 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 4 cut(s) 212, 279, 357, 513
SatI GCNGC 3 cut(s) 75, 497, 506
Sau3AI GATC 2 cut(s) 227, 448
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 413
SfuI TTCGAA 1 cut(s) 567
SlaI CTCGAG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 413, 452
SmoI CTYRAG 2 cut(s) 413, 452
SsiI CCGC 1 cut(s) 508
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 414, 567
TaqII GACCGA 1 cut(s) 222
TfiI GAWTC 2 cut(s) 157, 418
Tru1I TTAA 4 cut(s) 212, 279, 357, 513
Tru9I TTAA 4 cut(s) 212, 279, 357, 513
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 74, 496, 505
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 228, 407, 420, 539
TspRI CASTG 1 cut(s) 237
XhoI CTCGAG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 530
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.