Prupe.1G000800_v2.0.a1

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013003
Physical Location & Seq
Reverse (-)
112407 .. 118076
5670 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G000800.1

Sequence Viewer

Length: 717 bp
ATGGAGGGCGGAGCAATGTCATTGTCGTCGGAGAATAGGAAAGAAGAAGAGCAGCAGGGAACGTCCTATACCTATTGGGTGAGGCAAGTGGCGGAGGATACGGCGCCTCCCCCAGTTCCTCGAAAACTCTCACCTCAGGACATTCTCTCCGCTCAATCCCAGCCTTCCACCCTCGGTTCTCTCTGGAATCGGGCTGGAACTTGGGAGGAGAAGAATGTTAATAAATGGGCAACAGATAGAATAAAGGTTTGTCATGGAGCTTCTTTTATCAGTGGGTACCTTGGAGTTCTCAGGTGGCAAAGCAGAGATATCAGATGTCTTCAAATGTGTAGGAGATTTGCGATTAGAGATTGTAATCTTTTTGATTATGGTGATATGATAATAGACTCATTCCTCATGAGTTCATCTTTACTGAGTGACCAGGCATTCTTGGTGACAGTGCGAAACAAGAAACGTGTTAGCTACACCTATGAACTAACCTTGAAAGTAAAAGGGGAGTGGATATTTGGAGAGGAGAAAAACACAGTCAAGGGCCAGATAGACATCCCAGAGTTTTCATTTGGTGAGCTAGATGACTTGCAGATGGAAGTGAGACTAGGTGAAGAGAAGGATATTCTACGTCAAGATAAGTTACGAGTTAGCAAGGATTTGAAGCTGTTTTTGCAGCCTGTTCGCGAGAAATTGCTTCAATTTGAACAGGAACTCAAAGACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

239

Amino Acids

27.56

Weight (kDa)

5.71

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58110
fragaria_vesca FvH4_4g00120
malus_domestica MD04G1000800.v1.1
prunus_persica Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1
pyrus_communis pycom04g00120
rosa_chinensis RchiOBHm_Chr4g0384721
rosa_laevigata RLG00000010277
rosa_multiflora Rmu_sc0004923.1_g000007
rosa_roxburghii Rroxscaffold_5G00332740
rosa_rugosa Rorug03G0297200
rosa_samantha Rh4AG000700 Rh4BG000600 Rh4CG000500
rosa_wichuraiana Rw1G017640 Rw4G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 103, 276
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 675
AciI CCGC 3 cut(s) 9, 92, 150
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 5 cut(s) 323, 484, 652, 689, 695
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 4 cut(s) 260, 462, 568, 655
AluI AGCT 4 cut(s) 260, 462, 568, 655
Alw26I GTCTC 1 cut(s) 586
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 52, 664
Asp718I GGTACC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 6 cut(s) 91, 123, 383, 445, 575, 611
AxyI CCTNAGG 1 cut(s) 135
BanI GGYRCC 2 cut(s) 103, 276
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 64, 676
BccI CCATC 1 cut(s) 577
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 1 cut(s) 422
BciVI GTATCC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 2 cut(s) 569, 596
BfoI RGCGCY 1 cut(s) 107
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 2 cut(s) 53, 665
BlsI GCNGC 2 cut(s) 54, 666
Bme1390I CCNGG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 2 cut(s) 105, 278
BmrFI CCNGG 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 107
BmuI ACTGGG 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 311
BsaBI GATNNNNATC 2 cut(s) 354, 542
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 172, 280
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 131, 161
Bse1I ACTGG 1 cut(s) 113
Bse21I CCTNAGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 2 cut(s) 354, 542
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 172, 280
BseGI GGATG 1 cut(s) 543
BseJI GATNNNNATC 2 cut(s) 354, 542
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 3 cut(s) 149, 304, 404
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 221, 527
BseXI GCAGC 2 cut(s) 64, 676
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 1 cut(s) 534
BshNI GGYRCC 2 cut(s) 103, 276
BsmAI GTCTC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 1 cut(s) 534
Bsp68I TCGCGA 1 cut(s) 675
BspACI CCGC 3 cut(s) 9, 92, 150
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 3 cut(s) 148, 303, 405
BspFNI CGCG 1 cut(s) 675
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 105, 278
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 2 cut(s) 103, 276
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 172, 280
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 2 cut(s) 439, 526
Bst6I CTCTTC 2 cut(s) 42, 597
BstACI GRCGYC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 135, 290, 413
BstF5I GGATG 1 cut(s) 543
BstFNI CGCG 1 cut(s) 675
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 586
BstMWI GCNNNNNNNGC 1 cut(s) 661
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 64, 676
BstV2I GAAGAC 1 cut(s) 311
Bsu36I CCTNAGG 1 cut(s) 135
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 534
BtsCI GGATG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 277, 444
BtuMI TCGCGA 1 cut(s) 675
CciI TCATGA 1 cut(s) 396
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 532
Csp6I GTAC 1 cut(s) 277
CviAII CATG 2 cut(s) 254, 397
CviJI RGCY 8 cut(s) 163, 194, 260, 462, 534, 568, 655, 667
CviKI_1 RGCY 8 cut(s) 163, 194, 260, 462, 534, 568, 655, 667
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 3 cut(s) 135, 290, 413
DinI GGCGCC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 42, 597
EarI CTCTTC 2 cut(s) 42, 597
EciI GGCGGA 2 cut(s) 24, 107
Eco130I CCWWGG 1 cut(s) 280
Eco32I GATATC 1 cut(s) 310
Eco81I CCTNAGG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 280
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 257, 400
FaiI YATR 8 cut(s) 69, 255, 369, 377, 398, 471, 713, 715
FatI CATG 2 cut(s) 253, 396
Fnu4HI GCNGC 2 cut(s) 53, 665
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 2 cut(s) 53, 665
FspBI CTAG 2 cut(s) 569, 596
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 53, 665
GsaI CCCAGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 534
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 2 cut(s) 257, 400
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 2 cut(s) 187, 386
HphI GGTGA 6 cut(s) 91, 123, 383, 445, 575, 611
Hpy188I TCNGA 2 cut(s) 31, 314
Hpy188III TCNNGA 5 cut(s) 137, 184, 397, 623, 674
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 174, 601
HpyCH4III ACNGT 2 cut(s) 439, 526
HpyCH4IV ACGT 3 cut(s) 62, 454, 619
HpyCH4V TGCA 2 cut(s) 580, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 661
HpyF3I CTNAG 3 cut(s) 135, 290, 413
HpySE526I ACGT 3 cut(s) 62, 454, 619
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 257, 400
HspAI GCGC 1 cut(s) 104
KasI GGCGCC 1 cut(s) 103
KpnI GGTACC 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 11, 257
Lsp1109I GCAGC 2 cut(s) 64, 676
MaeI CTAG 2 cut(s) 569, 596
MaeII ACGT 3 cut(s) 62, 454, 619
MaeIII GTNAC 3 cut(s) 416, 433, 630
MbiI CCGCTC 1 cut(s) 152
MboII GAAGA 5 cut(s) 56, 59, 223, 311, 614
MluCI AATT 2 cut(s) 680, 689
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 9 cut(s) 75, 88, 117, 129, 144, 182, 199, 404, 505
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 661
NarI GGCGCC 1 cut(s) 104
NlaIII CATG 2 cut(s) 257, 400
NlaIV GGNNCC 2 cut(s) 105, 278
NmuCI GTSAC 2 cut(s) 416, 433
NruI TCGCGA 1 cut(s) 675
PagI TCATGA 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 42
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 2 cut(s) 54, 666
PleI GAGTC 1 cut(s) 380
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 105, 278
PspPI GGNCC 1 cut(s) 532
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
RruI TCGCGA 1 cut(s) 675
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 53, 665
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 422
SfoI GGCGCC 1 cut(s) 105
Sse9I AATT 2 cut(s) 680, 689
SsiI CCGC 3 cut(s) 9, 92, 150
SspDI GGCGCC 1 cut(s) 103
SspMI CTAG 2 cut(s) 569, 596
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 439, 526
TaiI ACGT 3 cut(s) 65, 457, 622
TaqI TCGA 1 cut(s) 121
TasI AATT 2 cut(s) 680, 689
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 277, 444
TseFI GTSAC 2 cut(s) 416, 433
TseI GCWGC 2 cut(s) 52, 664
Tsp45I GTSAC 2 cut(s) 416, 433
TspDTI ATGAA 3 cut(s) 393, 486, 546
TspRI CASTG 2 cut(s) 277, 444
XspI CTAG 2 cut(s) 569, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.