pycom04g00120

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013003
Physical Location & Seq
Reverse (-)
56565 .. 61762
5198 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g00120.3

Sequence Viewer

Length: 630 bp
ATGGAGGGCGAAGGAGCATTGTCGCCGCCGTCTTCGTCGGAGAACAGGAAAGAAGAAGAGCAGCAGGGAGCGTCGTACACCTATTGGGTGAGGCAAGTGACGGAGGATGCGGCGCCTCTGCCAGTTCCTCGAAAGCTCTCACCTCAGGACATTACCTCCGCCCAGTCCCACCCTTCCAACCTCGGTTCTCTCTGGAATCGGGCTGGAACTTGGGAGGAGAAGAATGTGAATAAATGGGCAACCGATAGAATAAAGGAGTTGATTGCATCGGTGGGTTCCTTGGAGTTCTCAGGTGGTATAGCAGAAATATCACATGTCTCTAAATGTGTAGGAGATGCATTCTTGGTGACGGTGCGAAACAAGAAACGTGTTGGCTACACCTATGAACTAACCTTGAAAGTCAAAGGGGAGTGGGTAATTGAGGAGGAGAAAAAGATGATTAAGGGCCAGATAGATATCCCAGAGTTCTCGTTTGGGGAGCTAGATGACTTGCAGATGGGGGTGAAATTGAGTGAAGAGAAGGATCTTCTACATCAAGATAAGTTACGTGTTAGCCAGGATTTGAAGCTATTTCTGCAGCCTGTTCGTGAGAAATTGCTTCAATTTGAACAGGAACTCAAAGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

210

Amino Acids

23.7

Weight (kDa)

5.2

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58110
fragaria_vesca FvH4_4g00120
malus_domestica MD04G1000800.v1.1
prunus_persica Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1
pyrus_communis pycom04g00120
rosa_chinensis RchiOBHm_Chr4g0384721
rosa_laevigata RLG00000010277
rosa_multiflora Rmu_sc0004923.1_g000007
rosa_roxburghii Rroxscaffold_5G00332740
rosa_rugosa Rorug03G0297200
rosa_samantha Rh4AG000700 Rh4BG000600 Rh4CG000500
rosa_wichuraiana Rw1G017640 Rw4G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 112
AciI CCGC 3 cut(s) 26, 110, 159
AclWI GGATC 1 cut(s) 531
AcsI RAATTY 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 1 cut(s) 77
AflIII ACRYGT 3 cut(s) 313, 367, 547
AgsI TTSAA 4 cut(s) 397, 565, 602, 608
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 3 cut(s) 136, 481, 568
AluI AGCT 3 cut(s) 136, 481, 568
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 531
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 61, 577
ApoI RAATTY 1 cut(s) 624
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 4 cut(s) 100, 132, 358, 514
AxyI CCTNAGG 1 cut(s) 144
BanI GGYRCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 73, 589
BccI CCATC 1 cut(s) 490
BceAI ACGGC 1 cut(s) 13
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 4 cut(s) 26, 62, 111, 578
BlsI GCNGC 4 cut(s) 27, 63, 112, 579
Bme1390I CCNGG 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 114, 277
BmrFI CCNGG 1 cut(s) 557
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 3 cut(s) 97, 275, 325
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 181, 279
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 2 cut(s) 122, 163
Bse21I CCTNAGG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 455
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 2 cut(s) 181, 279
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 455
BseMII CTCAG 2 cut(s) 158, 303
BseNI ACTGG 2 cut(s) 122, 163
BseRI GAGGAG 3 cut(s) 230, 437, 440
BseXI GCAGC 2 cut(s) 73, 589
BshFI GGCC 1 cut(s) 447
BshNI GGYRCC 1 cut(s) 112
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 1 cut(s) 447
Bsp143I GATC 1 cut(s) 523
BspACI CCGC 3 cut(s) 26, 110, 159
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 2 cut(s) 157, 302
BspLI GGNNCC 2 cut(s) 114, 277
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 112
BsrI ACTGG 2 cut(s) 122, 163
BssECI CCNNGG 2 cut(s) 181, 279
BssMI GATC 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 51, 510
BstACI GRCGYC 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 548
BstDEI CTNAG 2 cut(s) 144, 289
BstF5I GGATG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 575
BstV1I GCAGC 2 cut(s) 73, 589
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 112
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 445
CseI GACGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 314
CviJI RGCY 8 cut(s) 136, 203, 375, 447, 481, 555, 568, 580
CviKI_1 RGCY 8 cut(s) 136, 203, 375, 447, 481, 555, 568, 580
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 144, 289
DinI GGCGCC 1 cut(s) 114
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 51, 510
EarI CTCTTC 2 cut(s) 51, 510
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 457
Eco81I CCTNAGG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 555
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 340
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 317
FaiI YATR 3 cut(s) 299, 315, 384
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 26, 62, 111, 578
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 4 cut(s) 26, 62, 111, 578
FspBI CTAG 1 cut(s) 482
GlaI GCGC 1 cut(s) 114
GluI GCNGC 4 cut(s) 26, 62, 111, 578
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 447
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 1 cut(s) 317
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 1 cut(s) 196
HphI GGTGA 4 cut(s) 100, 132, 358, 514
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 4 cut(s) 146, 193, 536, 587
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 2 cut(s) 40, 76
HpyAV CCTTC 3 cut(s) 5, 183, 514
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 367, 547
HpyCH4V TGCA 4 cut(s) 266, 338, 493, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 2 cut(s) 144, 289
HpySE526I ACGT 2 cut(s) 367, 547
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 1 cut(s) 317
HspAI GCGC 1 cut(s) 113
KasI GGCGCC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 523
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 3 cut(s) 14, 68, 478
Lsp1109I GCAGC 2 cut(s) 73, 589
LweI GCATC 3 cut(s) 97, 275, 325
MaeI CTAG 1 cut(s) 482
MaeII ACGT 2 cut(s) 367, 547
MaeIII GTNAC 3 cut(s) 97, 346, 543
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 6 cut(s) 24, 65, 68, 232, 518, 527
MflI RGATCY 1 cut(s) 523
MluCI AATT 5 cut(s) 417, 506, 593, 602, 624
Mly113I GGCGCC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 18, 201
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 557
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 1 cut(s) 574
NarI GGCGCC 1 cut(s) 113
NdeII GATC 1 cut(s) 523
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 2 cut(s) 114, 277
NmuCI GTSAC 2 cut(s) 97, 346
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 317
PciI ACATGT 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 4 cut(s) 27, 63, 112, 579
PluTI GGCGCC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 548
PscI ACATGT 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 2 cut(s) 114, 277
PspPI GGNCC 1 cut(s) 445
PstI CTGCAG 1 cut(s) 579
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 4 cut(s) 26, 62, 111, 578
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 557
SfaNI GCATC 3 cut(s) 97, 275, 325
SfcI CTRYAG 1 cut(s) 575
SfoI GGCGCC 1 cut(s) 114
Sse9I AATT 5 cut(s) 417, 506, 593, 602, 624
SsiI CCGC 3 cut(s) 26, 110, 159
SspDI GGCGCC 1 cut(s) 112
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 2 cut(s) 370, 550
TaqI TCGA 1 cut(s) 130
TasI AATT 5 cut(s) 417, 506, 593, 602, 624
TauI GCSGC 2 cut(s) 28, 113
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseFI GTSAC 2 cut(s) 97, 346
TseI GCWGC 2 cut(s) 61, 577
Tsp45I GTSAC 2 cut(s) 97, 346
TspDTI ATGAA 1 cut(s) 399
TspGWI ACGGA 1 cut(s) 116
XapI RAATTY 1 cut(s) 624
XceI RCATGY 1 cut(s) 317
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.