FvH4_4g00120

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013003
Physical Location & Seq
Forward (+)
147396 .. 150982
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00120.t1

Sequence Viewer

Length: 618 bp
ATGGAAGGCGATGCTGGATTGTCGACAGAGAATGCGAAAGAAGCGCAGCAGCAGGGGGCGTCCTACACTTATTGGGTGAGGCAGGTGACGGAGGAAGCGGCACCTCCCCCGGTTCCCAGAAAGCTCTCATCTCAGGATATTCTCTCCTCCCAATCTCAGCCTGCCACCCTTGGATCTCTCTGGAATCGAGCCGGAACTTGGGAGGAGAAGAATGTCAATAAATGGGCGACGGACAGAATAAAGGAGTTGCTTGTATCAGTGGGTTCCGTGGAGTTCCCAGGTGGCAATGCAGAAATATCAGATGTCTCAAAATGCGTAGGGGATGCATTCTTGGTGACTGTGCGAAACAAGAAGCGCGTTGGCTACACCTATGAACTAACCCTGAAATTCAAAGGGGAATGGATCATCGGAGAGGAGAAAAAGATGGTCAAGGGCCAGATAGACATCCCAGAGTTTTCTTTTGGTGAGCTAGATGACTTACAGATGGAAGTGAGGTTGGGTGAAACGAAGGATCTTCTGCATCAAGATAAGTTGCAAATTAGCCAAAATTTGAAGCTGTTTTTGCAGCCTGTTCGTGAGAAATTACTTCAATTTGAACAGGAACTAAAAGACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

206

Amino Acids

23.2

Weight (kDa)

5.17

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aha1_N PF09229 69 - 204 3.7e-30 Activator of Hsp90 ATPase, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58110
fragaria_vesca FvH4_4g00120
malus_domestica MD04G1000800.v1.1
prunus_persica Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1
pyrus_communis pycom04g00120
rosa_chinensis RchiOBHm_Chr4g0384721
rosa_laevigata RLG00000010277
rosa_multiflora Rmu_sc0004923.1_g000007
rosa_roxburghii Rroxscaffold_5G00332740
rosa_rugosa Rorug03G0297200
rosa_samantha Rh4AG000700 Rh4BG000600 Rh4CG000500
rosa_wichuraiana Rw1G017640 Rw4G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 23
AccII CGCG 1 cut(s) 357
AciI CCGC 1 cut(s) 98
AclWI GGATC 3 cut(s) 181, 410, 519
AcsI RAATTY 2 cut(s) 386, 547
AcyI GRCGYC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 4 cut(s) 391, 553, 590, 596
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 124, 469, 556
AluI AGCT 3 cut(s) 124, 469, 556
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 3 cut(s) 181, 410, 519
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 3 cut(s) 46, 49, 565
ApoI RAATTY 2 cut(s) 386, 547
AspLEI GCGC 2 cut(s) 46, 357
AspS9I GGNCC 1 cut(s) 433
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 5 cut(s) 88, 97, 346, 476, 512
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 58, 61, 577
BccI CCATC 2 cut(s) 418, 478
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 1 cut(s) 279
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 4 cut(s) 47, 50, 99, 566
BlsI GCNGC 4 cut(s) 48, 51, 100, 567
Bme1390I CCNGG 2 cut(s) 110, 279
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 3 cut(s) 102, 114, 265
BmrFI CCNGG 2 cut(s) 110, 279
BmsI GCATC 2 cut(s) 313, 529
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 108, 169, 267, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 4 cut(s) 108, 169, 267, 277
BseGI GGATG 2 cut(s) 328, 444
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 146, 170
BseRI GAGGAG 3 cut(s) 136, 218, 428
BseXI GCAGC 3 cut(s) 58, 61, 577
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 435
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 2 cut(s) 110, 192
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 310
BsmI GAATGC 2 cut(s) 37, 326
BsnI GGCC 1 cut(s) 435
Bsp143I GATC 3 cut(s) 173, 402, 511
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 145, 169
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 102, 114, 265
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 3 cut(s) 181, 410, 519
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 108, 169, 267, 277
BssMI GATC 3 cut(s) 173, 402, 511
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 132, 156
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 328, 444
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 2 cut(s) 46, 357
BstKTI GATC 3 cut(s) 176, 405, 514
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 3 cut(s) 173, 402, 511
BstMWI GCNNNNNNNGC 2 cut(s) 41, 562
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 108, 277
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 58, 61, 577
BstX2I RGATCY 2 cut(s) 173, 511
BstYI RGATCY 2 cut(s) 173, 511
BsuRI GGCC 1 cut(s) 435
BtgI CCRYGG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 2 cut(s) 328, 444
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 2 cut(s) 46, 357
Cfr13I GGNCC 1 cut(s) 433
CseI GACGC 1 cut(s) 48
CviJI RGCY 9 cut(s) 124, 160, 191, 363, 435, 469, 543, 556, 568
CviKI_1 RGCY 9 cut(s) 124, 160, 191, 363, 435, 469, 543, 556, 568
DdeI CTNAG 2 cut(s) 132, 156
DpnI GATC 3 cut(s) 175, 404, 513
DpnII GATC 3 cut(s) 173, 402, 511
Eco130I CCWWGG 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 169
FaiI YATR 1 cut(s) 372
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 4 cut(s) 47, 50, 99, 566
FokI GGATG 2 cut(s) 335, 431
Fsp4HI GCNGC 4 cut(s) 47, 50, 99, 566
FspBI CTAG 1 cut(s) 470
GlaI GCGC 2 cut(s) 45, 356
GluI GCNGC 4 cut(s) 47, 50, 99, 566
HaeIII GGCC 1 cut(s) 435
HapII CCGG 2 cut(s) 110, 192
HgaI GACGC 1 cut(s) 48
HhaI GCGC 2 cut(s) 46, 357
Hin1I GRCGYC 1 cut(s) 59
Hin6I GCGC 2 cut(s) 44, 355
HinP1I GCGC 2 cut(s) 44, 355
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 110, 192
HphI GGTGA 5 cut(s) 88, 97, 346, 476, 512
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 301, 410
Hpy188III TCNNGA 4 cut(s) 134, 181, 524, 575
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 5 cut(s) 290, 326, 520, 535, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 562
HpyF3I CTNAG 2 cut(s) 132, 156
Hsp92I GRCGYC 1 cut(s) 59
HspAI GCGC 2 cut(s) 44, 355
Kzo9I GATC 3 cut(s) 173, 402, 511
Lsp1109I GCAGC 3 cut(s) 58, 61, 577
LweI GCATC 2 cut(s) 313, 529
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 85, 334
MalI GATC 3 cut(s) 175, 404, 513
MboI GATC 3 cut(s) 173, 402, 511
MboII GAAGA 2 cut(s) 220, 506
MflI RGATCY 2 cut(s) 173, 511
MluCI AATT 5 cut(s) 386, 537, 547, 581, 590
MnlI CCTC 7 cut(s) 72, 85, 114, 157, 196, 406, 486
Mph1103I ATGCAT 1 cut(s) 328
MspI CCGG 2 cut(s) 110, 192
MspR9I CCNGG 2 cut(s) 110, 279
Mva1269I GAATGC 2 cut(s) 37, 326
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 41, 562
NciI CCSGG 1 cut(s) 110
NdeII GATC 3 cut(s) 173, 402, 511
NlaIV GGNNCC 3 cut(s) 102, 114, 265
NmuCI GTSAC 2 cut(s) 85, 334
NsiI ATGCAT 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 73
PctI GAATGC 2 cut(s) 37, 326
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 4 cut(s) 48, 51, 100, 567
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 3 cut(s) 102, 114, 265
PspPI GGNCC 1 cut(s) 433
PsuI RGATCY 2 cut(s) 173, 511
SalI GTCGAC 1 cut(s) 22
SatI GCNGC 4 cut(s) 47, 50, 99, 566
Sau3AI GATC 3 cut(s) 173, 402, 511
Sau96I GGNCC 1 cut(s) 433
ScrFI CCNGG 2 cut(s) 110, 279
SetI ASST 8 cut(s) 87, 106, 126, 283, 371, 471, 497, 558
SfaNI GCATC 2 cut(s) 313, 529
Sse9I AATT 5 cut(s) 386, 537, 547, 581, 590
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 108, 277
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 23, 187
TasI AATT 5 cut(s) 386, 537, 547, 581, 590
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 184
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 2 cut(s) 85, 334
TseI GCWGC 3 cut(s) 46, 49, 565
Tsp45I GTSAC 2 cut(s) 85, 334
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 3 cut(s) 104, 245, 256
TspRI CASTG 1 cut(s) 264
XapI RAATTY 2 cut(s) 386, 547
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 1 cut(s) 470
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.