Rh4CG000500

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013003
Physical Location & Seq
Forward (+)
132000 .. 134553
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG000500.1

Sequence Viewer

Length: 558 bp
ATGGAAGGGGATGGCGGTGGTGCGATGCCATTGTCAAGTGAGAATGCGAAAGAAGAGCAGCAGGGGACGTCCTACACTTATTGGGTGAGGCAAGTGACGGAGGAAGCGGCGCCTCCCCCGGTTCCCAGAATGCTCTCGTCTCAGGATATTCTCTCCGCCCAATCTCAGCCTGCCACCCTCGGCTCTCTCTGGAATCGGGCTGGAACTTGGGAGGAGAAGAATGTCAATAAATGGGCGACAGATAGAATAAAGGAGTTGCTTGTATCAGTGGGTTCCGTGGAGTTCCCAGGTGGCAAAGCACAAATATCAGATGTCTCCAAGTGTGTAGGGGATGCATTCTTGGTGACTGTGCGAAACAAGAAACGCGTTGGCTACACCTATGAACTAACCTTGAAAGTCAAAGGGGAATTGATTACCGGAGAGGAGAAAAAGATGGTAAAGGGCCAGATAGACATCCCAGAGTTTTCATATGGGGAACTAGATGACTTGCAGGTATTTTATACTCACTTTCAAGCTACAGAGAAGGATATGATGGAGAATAAGATGGTTTTAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

185

Amino Acids

20.6

Weight (kDa)

4.98

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aha1_N PF09229 72 - 175 4e-24 Activator of Hsp90 ATPase, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58110
fragaria_vesca FvH4_4g00120
malus_domestica MD04G1000800.v1.1
prunus_persica Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1
pyrus_communis pycom04g00120
rosa_chinensis RchiOBHm_Chr4g0384721
rosa_laevigata RLG00000010277
rosa_multiflora Rmu_sc0004923.1_g000007
rosa_roxburghii Rroxscaffold_5G00332740
rosa_rugosa Rorug03G0297200
rosa_samantha Rh4AG000700 Rh4BG000600 Rh4CG000500
rosa_wichuraiana Rw1G017640 Rw4G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 109
AccII CGCG 1 cut(s) 366
AciI CCGC 3 cut(s) 15, 107, 156
AcyI GRCGYC 2 cut(s) 68, 110
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 2 cut(s) 394, 512
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 2 cut(s) 144, 319
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 97, 355
BanI GGYRCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 70
BccI CCATC 4 cut(s) 5, 427, 526, 538
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 144, 319
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 2 cut(s) 59, 108
BlsI GCNGC 2 cut(s) 60, 109
Bme1390I CCNGG 2 cut(s) 119, 288
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 3 cut(s) 111, 123, 274
BmrFI CCNGG 2 cut(s) 119, 288
BmsI GCATC 2 cut(s) 15, 322
BpuMI CCSGG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 68, 110
BsaJI CCNNGG 4 cut(s) 117, 178, 276, 286
BsaWI WCCGGW 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 452
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 117, 178, 276, 286
BseGI GGATG 3 cut(s) 16, 337, 453
BseJI GATNNNNATC 1 cut(s) 452
BseMII CTCAG 2 cut(s) 155, 179
BseRI GAGGAG 2 cut(s) 227, 437
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 2 cut(s) 119, 417
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 144, 319
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 3 cut(s) 49, 135, 335
BsnI GGCC 1 cut(s) 444
BspACI CCGC 3 cut(s) 15, 107, 156
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 2 cut(s) 154, 178
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 3 cut(s) 111, 123, 274
BspMI ACCTGC 1 cut(s) 481
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 109
BssECI CCNNGG 4 cut(s) 117, 178, 276, 286
BssNI GRCGYC 2 cut(s) 68, 110
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 2 cut(s) 68, 110
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 141, 165
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 16, 337, 453
BstFNI CGCG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 144, 319
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 117, 286
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 16, 337, 453
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 442
CviJI RGCY 6 cut(s) 169, 183, 200, 372, 444, 515
CviKI_1 RGCY 6 cut(s) 169, 183, 200, 372, 444, 515
DdeI CTNAG 2 cut(s) 141, 165
DinI GGCGCC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 144
FaiI YATR 5 cut(s) 381, 469, 471, 501, 530
FaqI GGGAC 1 cut(s) 79
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 2 cut(s) 59, 108
FokI GGATG 3 cut(s) 23, 344, 440
Fsp4HI GCNGC 2 cut(s) 59, 108
FspBI CTAG 1 cut(s) 479
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 59, 108
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 1 cut(s) 444
HapII CCGG 2 cut(s) 119, 417
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 2 cut(s) 68, 110
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 119, 417
HphI GGTGA 2 cut(s) 97, 355
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 2 cut(s) 143, 190
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 335, 490
HpyF3I CTNAG 2 cut(s) 141, 165
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 2 cut(s) 68, 110
HspAI GCGC 1 cut(s) 110
KasI GGCGCC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 15, 322
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 94, 343
MboII GAAGA 2 cut(s) 65, 229
MluCI AATT 1 cut(s) 407
MluI ACGCGT 1 cut(s) 364
Mly113I GGCGCC 1 cut(s) 110
MnlI CCTC 6 cut(s) 81, 94, 123, 188, 205, 415
Mph1103I ATGCAT 1 cut(s) 337
MseI TTAA 1 cut(s) 551
MspI CCGG 2 cut(s) 119, 417
MspR9I CCNGG 2 cut(s) 119, 288
Mva1269I GAATGC 3 cut(s) 49, 135, 335
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 366
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 1 cut(s) 119
NdeI CATATG 1 cut(s) 469
NlaIV GGNNCC 3 cut(s) 111, 123, 274
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 94, 343
NsiI ATGCAT 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 3 cut(s) 49, 135, 335
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 60, 109
PluTI GGCGCC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 111, 123, 274
PspPI GGNCC 1 cut(s) 442
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 59, 108
Sau96I GGNCC 1 cut(s) 442
ScrFI CCNGG 2 cut(s) 119, 288
SetI ASST 6 cut(s) 71, 292, 380, 392, 495, 517
SfaNI GCATC 2 cut(s) 15, 322
SfcI CTRYAG 1 cut(s) 516
SfoI GGCGCC 1 cut(s) 111
Sse9I AATT 1 cut(s) 407
SsiI CCGC 3 cut(s) 15, 107, 156
SspDI GGCGCC 1 cut(s) 109
SspMI CTAG 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 117, 286
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 71
TasI AATT 1 cut(s) 407
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 2 cut(s) 94, 343
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 2 cut(s) 94, 343
TspDTI ATGAA 2 cut(s) 396, 456
TspGWI ACGGA 2 cut(s) 113, 265
TspRI CASTG 1 cut(s) 273
XspI CTAG 1 cut(s) 479
ZraI GACGTC 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.