Rmu_sc0004923.1_g000007

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004923.1
OG0013003
Physical Location & Seq
Reverse (-)
13436 .. 16857
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004923.1_g000007.1.cds

Sequence Viewer

Length: 936 bp
atggaaggggatggcggtggtgcgatgccattgtcaagtgagaatgcgaaagaagagcagcaggggacgtcctacacttattgggtgaggcaagtgactgaggaagcggcgcctcccccggttcccagaaagctctcatctcaggatattctctccgcccaatctgagcctgccaccctcggctctctctggaatcgggctggaacttgggaggagaagaatgtcaataaatgggcgacagatagaatgaaggagttgcttgtatcagtgggttccgtggagttcccaggtggcaaagcccaaatatcagaagtctccaagtgtgtaggggatgcattcttggtgactgtgcgaaacaagaaacgcgttggctacacctatgaactaaccttgaaagtcaaaggggaatggattaccggagaggagaaaaagatggtaaagggccagatagacatcccagagttttcatatggggaactagatgacttgcagatggaagtgcggttgggtgaagagaaggatcttctgcatcaagataagttgcaaattagccaaaatctgaagctatttttgcagcctctgtccgaaggttctggtggcgaccccggcgttcatcttctccgcccttccatctggaagcagcggagccagcattcattgatgattcagcgaaagcgcacaaaaaatggtggtgatatatcctatgatcttgaagctctccatatggaagacctcgattccaccatccaacccagtcctactctacaacccaattcgagctatgctagcaaattgaaaaaccctgttgatcgataccgacaaaccatgattgagtattttgaattcactgatgatgattgcgtctactctcaaggcaagcatggtcaaaacgtctctttctctgagaaggtacacaatgaacttgactatgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

311

Amino Acids

35.08

Weight (kDa)

5.19

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58110
fragaria_vesca FvH4_4g00120
malus_domestica MD04G1000800.v1.1
prunus_persica Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1
pyrus_communis pycom04g00120
rosa_chinensis RchiOBHm_Chr4g0384721
rosa_laevigata RLG00000010277
rosa_multiflora Rmu_sc0004923.1_g000007
rosa_roxburghii Rroxscaffold_5G00332740
rosa_rugosa Rorug03G0297200
rosa_samantha Rh4AG000700 Rh4BG000600 Rh4CG000500
rosa_wichuraiana Rw1G017640 Rw4G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 864
AccII CGCG 1 cut(s) 366
AciI CCGC 6 cut(s) 15, 107, 156, 502, 622, 643
AclWI GGATC 1 cut(s) 528
AcsI RAATTY 1 cut(s) 842
AcuI CTGAAG 1 cut(s) 581
AcyI GRCGYC 2 cut(s) 68, 110
AfaI GTAC 1 cut(s) 912
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 4 cut(s) 394, 713, 796, 842
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 4 cut(s) 133, 565, 716, 780
AluI AGCT 4 cut(s) 133, 565, 716, 780
Alw26I GTCTC 2 cut(s) 319, 898
AlwI GGATC 1 cut(s) 528
AlwNI CAGNNNCTG 1 cut(s) 580
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 3 cut(s) 58, 574, 640
ApoI RAATTY 1 cut(s) 842
AspLEI GCGC 2 cut(s) 112, 678
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 2 cut(s) 119, 606
AsuHPI GGTGA 4 cut(s) 97, 355, 521, 704
AsuNHI GCTAGC 1 cut(s) 785
BanI GGYRCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 70, 586, 652
BccI CCATC 5 cut(s) 5, 427, 487, 638, 752
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 2 cut(s) 119, 606
BcoDI GTCTC 2 cut(s) 319, 898
BfaI CTAG 3 cut(s) 479, 786, 934
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 4 cut(s) 59, 108, 575, 641
BlsI GCNGC 4 cut(s) 60, 109, 576, 642
Bme1390I CCNGG 3 cut(s) 119, 288, 606
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 4 cut(s) 111, 123, 274, 647
BmrFI CCNGG 3 cut(s) 119, 288, 606
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 3 cut(s) 15, 322, 538
BmtI GCTAGC 1 cut(s) 789
BmuI ACTGGG 1 cut(s) 747
BpiI GAAGAC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 855
BpuMI CCSGG 2 cut(s) 119, 606
Bsa29I ATCGAT 1 cut(s) 811
BsaBI GATNNNNATC 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 68, 110
BsaJI CCNNGG 5 cut(s) 117, 178, 276, 286, 604
BsaWI WCCGGW 1 cut(s) 416
Bse1I ACTGG 1 cut(s) 753
Bse8I GATNNNNATC 1 cut(s) 452
BseBI CCWGG 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 811
BseDI CCNNGG 5 cut(s) 117, 178, 276, 286, 604
BseGI GGATG 4 cut(s) 16, 337, 453, 744
BseJI GATNNNNATC 1 cut(s) 452
BseMII CTCAG 4 cut(s) 90, 155, 156, 894
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 2 cut(s) 227, 437
BseXI GCAGC 3 cut(s) 70, 586, 652
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 109
BshVI ATCGAT 1 cut(s) 811
BsiSI CCGG 3 cut(s) 119, 417, 606
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 319, 898
BsmBI CGTCTC 1 cut(s) 898
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 3 cut(s) 49, 335, 652
BsnI GGCC 1 cut(s) 444
Bsp143I GATC 3 cut(s) 520, 706, 808
BspACI CCGC 6 cut(s) 15, 107, 156, 502, 622, 643
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 4 cut(s) 91, 154, 157, 895
BspDI ATCGAT 1 cut(s) 811
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 4 cut(s) 111, 123, 274, 647
BspOI GCTAGC 1 cut(s) 789
BspPI GGATC 1 cut(s) 528
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 753
BssECI CCNNGG 5 cut(s) 117, 178, 276, 286, 604
BssMI GATC 3 cut(s) 520, 706, 808
BssNI GRCGYC 2 cut(s) 68, 110
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 2 cut(s) 48, 507
BstACI GRCGYC 2 cut(s) 68, 110
BstC8I GCNNGC 4 cut(s) 171, 650, 787, 878
BstDEI CTNAG 4 cut(s) 99, 141, 165, 903
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 16, 337, 453, 744
BstFNI CGCG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 2 cut(s) 112, 678
BstKTI GATC 3 cut(s) 523, 709, 811
BstMAI GTCTC 2 cut(s) 319, 898
BstMBI GATC 3 cut(s) 520, 706, 808
BstMWI GCNNNNNNNGC 4 cut(s) 571, 606, 649, 786
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 117, 286, 604
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 70, 586, 652
BstV2I GAAGAC 1 cut(s) 735
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 1 cut(s) 811
BsuRI GGCC 1 cut(s) 444
BsuTUI ATCGAT 1 cut(s) 811
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 4 cut(s) 16, 337, 453, 744
BtsIMutI CAGTG 2 cut(s) 273, 846
Cac8I GCNNGC 4 cut(s) 171, 650, 787, 878
CaiI CAGNNNCTG 1 cut(s) 580
CfoI GCGC 2 cut(s) 112, 678
Cfr13I GGNCC 1 cut(s) 442
ClaI ATCGAT 1 cut(s) 811
CseI GACGC 1 cut(s) 850
Csp6I GTAC 1 cut(s) 911
CviAII CATG 2 cut(s) 826, 881
CviQI GTAC 1 cut(s) 911
DdeI CTNAG 4 cut(s) 99, 141, 165, 903
DinI GGCGCC 1 cut(s) 111
DpnI GATC 3 cut(s) 522, 708, 810
DpnII GATC 3 cut(s) 520, 706, 808
Eam1104I CTCTTC 2 cut(s) 48, 507
EarI CTCTTC 2 cut(s) 48, 507
EciI GGCGGA 2 cut(s) 145, 611
Eco57I CTGAAG 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 898
FaeI CATG 2 cut(s) 829, 884
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 825, 880
FauNDI CATATG 2 cut(s) 469, 723
FblI GTMKAC 1 cut(s) 864
Fnu4HI GCNGC 4 cut(s) 59, 108, 575, 641
FokI GGATG 4 cut(s) 23, 344, 440, 731
Fsp4HI GCNGC 4 cut(s) 59, 108, 575, 641
FspBI CTAG 3 cut(s) 479, 786, 934
GlaI GCGC 2 cut(s) 111, 677
GluI GCNGC 4 cut(s) 59, 108, 575, 641
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 1 cut(s) 444
HapII CCGG 3 cut(s) 119, 417, 606
HgaI GACGC 1 cut(s) 850
HhaI GCGC 2 cut(s) 112, 678
Hin1I GRCGYC 2 cut(s) 68, 110
Hin1II CATG 2 cut(s) 829, 884
Hin6I GCGC 2 cut(s) 110, 676
HinP1I GCGC 2 cut(s) 110, 676
HinfI GANTC 3 cut(s) 193, 664, 737
HpaII CCGG 3 cut(s) 119, 417, 606
HphI GGTGA 4 cut(s) 97, 355, 521, 704
Hpy166II GTNNAC 2 cut(s) 865, 913
Hpy188I TCNGA 5 cut(s) 166, 310, 561, 586, 904
Hpy188III TCNNGA 5 cut(s) 143, 190, 533, 634, 710
Hpy8I GTNNAC 2 cut(s) 865, 913
HpyAV CCTTC 5 cut(s) 244, 511, 581, 636, 901
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 68, 891
HpyCH4V TGCA 5 cut(s) 335, 490, 529, 544, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 571, 606, 649, 786
HpyF3I CTNAG 4 cut(s) 99, 141, 165, 903
HpySE526I ACGT 2 cut(s) 68, 891
Hsp92I GRCGYC 2 cut(s) 68, 110
Hsp92II CATG 2 cut(s) 829, 884
HspAI GCGC 2 cut(s) 110, 676
KasI GGCGCC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 520, 706, 808
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 3 cut(s) 70, 586, 652
LweI GCATC 3 cut(s) 15, 322, 538
MaeI CTAG 3 cut(s) 479, 786, 934
MaeII ACGT 2 cut(s) 68, 891
MaeIII GTNAC 2 cut(s) 94, 343
MalI GATC 3 cut(s) 522, 708, 810
MboI GATC 3 cut(s) 520, 706, 808
MboII GAAGA 6 cut(s) 65, 229, 515, 524, 608, 740
MflI RGATCY 1 cut(s) 520
MluCI AATT 4 cut(s) 546, 772, 791, 842
MluI ACGCGT 1 cut(s) 364
Mly113I GGCGCC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 772
MnlI CCTC 8 cut(s) 81, 94, 123, 188, 205, 415, 588, 743
Mph1103I ATGCAT 1 cut(s) 337
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 3 cut(s) 119, 417, 606
MspR9I CCNGG 3 cut(s) 119, 288, 606
Mva1269I GAATGC 3 cut(s) 49, 335, 652
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 4 cut(s) 571, 606, 649, 786
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 2 cut(s) 119, 606
NdeI CATATG 2 cut(s) 469, 723
NdeII GATC 3 cut(s) 520, 706, 808
NheI GCTAGC 1 cut(s) 785
NlaIII CATG 2 cut(s) 829, 884
NlaIV GGNNCC 4 cut(s) 111, 123, 274, 647
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 94, 343
NsiI ATGCAT 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 3 cut(s) 49, 335, 652
PfeI GAWTC 3 cut(s) 193, 664, 737
PkrI GCNGC 4 cut(s) 60, 109, 576, 642
PluTI GGCGCC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 4 cut(s) 111, 123, 274, 647
PspPI GGNCC 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 580
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 1 cut(s) 912
RsaNI GTAC 1 cut(s) 911
SapI GCTCTTC 1 cut(s) 48
SatI GCNGC 4 cut(s) 59, 108, 575, 641
Sau3AI GATC 3 cut(s) 520, 706, 808
Sau96I GGNCC 1 cut(s) 442
ScrFI CCNGG 3 cut(s) 119, 288, 606
SfaNI GCATC 3 cut(s) 15, 322, 538
SfoI GGCGCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
Sse9I AATT 4 cut(s) 546, 772, 791, 842
SsiI CCGC 6 cut(s) 15, 107, 156, 502, 622, 643
SspDI GGCGCC 1 cut(s) 109
SspMI CTAG 3 cut(s) 479, 786, 934
StyD4I CCNGG 3 cut(s) 117, 286, 604
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 71, 894
TaqI TCGA 3 cut(s) 735, 776, 811
TasI AATT 4 cut(s) 546, 772, 791, 842
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 3 cut(s) 193, 664, 737
TscAI CASTG 2 cut(s) 273, 853
TseFI GTSAC 2 cut(s) 94, 343
TseI GCWGC 3 cut(s) 58, 574, 640
Tsp45I GTSAC 2 cut(s) 94, 343
TspDTI ATGAA 6 cut(s) 263, 396, 456, 602, 645, 933
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 273, 853
XapI RAATTY 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 864
XspI CTAG 3 cut(s) 479, 786, 934
ZraI GACGTC 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.