Rroxscaffold_5G00332740

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013003
Physical Location & Seq
Forward (+)
115476 .. 117928
2453 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00332740.1

Sequence Viewer

Length: 513 bp
ATGGAAGGGGATGGCGGTGGTGCGATGCCATTGTCAAGTGAGAATGCGAAAGAAGAGCAGCAGGGGATGTCCTACACTTATTGGGCTGGAACTTGGGAGGAGAAGAATGTCAATAAATGGGCGACAGATAGGATAAAGGAGTTGCTTGTATCAGTGGGTTCCGTGGAGTTCCCAGGTGGCAAAGCACAAATATCAGATGTCTCCAAGTGTGTAGGGGATGCATTCTTGGTGACTGTGCGAAACAAGAAACGCGTTGGCTACACCTATGAACTAACCTTGAAAGTCAAAGGGGAATGGATTACCGGAGAGGAGAAAAAGATGGTAAAGGGCCAGATAGACATACCAGAGTTTTCATATGGGGAACTAGATGACTTGCAGATGGAAGTGCGGTTGGGTGAAGAGAAGGATCTTCTGCATCAAGATAAGTTGCAAATTAGCCAAAATCTGAAGCTATTTTTGCAGCCTGTTCGTGAGAAATTACTTCAATTTGAACAGGAACTAAAAGATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

170

Amino Acids

19.39

Weight (kDa)

5.03

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aha1_N PF09229 34 - 169 3e-30 Activator of Hsp90 ATPase, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58110
fragaria_vesca FvH4_4g00120
malus_domestica MD04G1000800.v1.1
prunus_persica Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1 Prupe.1G000800_v2.0.a1
pyrus_communis pycom04g00120
rosa_chinensis RchiOBHm_Chr4g0384721
rosa_laevigata RLG00000010277
rosa_multiflora Rmu_sc0004923.1_g000007
rosa_roxburghii Rroxscaffold_5G00332740
rosa_rugosa Rorug03G0297200
rosa_samantha Rh4AG000700 Rh4BG000600 Rh4CG000500
rosa_wichuraiana Rw1G017640 Rw4G000820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AciI CCGC 2 cut(s) 15, 388
AclWI GGATC 1 cut(s) 414
AcuI CTGAAG 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 3 cut(s) 280, 485, 491
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 451
AluI AGCT 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 1 cut(s) 414
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 58, 460
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 241, 407
BbvI GCAGC 2 cut(s) 70, 472
BccI CCATC 3 cut(s) 5, 313, 373
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 1 cut(s) 365
BisI GCNGC 2 cut(s) 59, 461
BlsI GCNGC 2 cut(s) 60, 462
Bme1390I CCNGG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 15, 208, 424
BsaJI CCNNGG 2 cut(s) 162, 172
BsaWI WCCGGW 1 cut(s) 302
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 162, 172
BseGI GGATG 3 cut(s) 16, 72, 223
BseRI GAGGAG 2 cut(s) 113, 323
BseXI GCAGC 2 cut(s) 70, 472
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 205
BsmI GAATGC 2 cut(s) 49, 221
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 2 cut(s) 15, 388
BspANI GGCC 1 cut(s) 330
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 1 cut(s) 414
BspQI GCTCTTC 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 162, 172
BssMI GATC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 48, 393
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 16, 72, 223
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 70, 472
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 16, 72, 223
BtsIMutI CAGTG 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 328
CviJI RGCY 6 cut(s) 86, 258, 330, 438, 451, 463
CviKI_1 RGCY 6 cut(s) 86, 258, 330, 438, 451, 463
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 48, 393
EarI CTCTTC 2 cut(s) 48, 393
Eco57I CTGAAG 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 223
FaiI YATR 4 cut(s) 267, 341, 355, 357
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 59, 461
FokI GGATG 3 cut(s) 23, 79, 230
Fsp4HI GCNGC 2 cut(s) 59, 461
FspBI CTAG 1 cut(s) 365
GluI GCNGC 2 cut(s) 59, 461
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 303
HpaII CCGG 1 cut(s) 303
HphI GGTGA 2 cut(s) 241, 407
Hpy188I TCNGA 2 cut(s) 196, 447
Hpy188III TCNNGA 2 cut(s) 419, 470
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 5 cut(s) 221, 376, 415, 430, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
Kzo9I GATC 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 48
LpnPI CCDG 9 cut(s) 47, 72, 159, 186, 316, 344, 357, 477, 479
Lsp1109I GCAGC 2 cut(s) 70, 472
LweI GCATC 3 cut(s) 15, 208, 424
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 4 cut(s) 65, 115, 401, 410
MflI RGATCY 1 cut(s) 406
MluCI AATT 3 cut(s) 432, 476, 485
MluI ACGCGT 1 cut(s) 250
MnlI CCTC 2 cut(s) 91, 301
Mph1103I ATGCAT 1 cut(s) 223
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 2 cut(s) 49, 221
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeI CATATG 1 cut(s) 355
NdeII GATC 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 2 cut(s) 49, 221
PkrI GCNGC 2 cut(s) 60, 462
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 406
SapI GCTCTTC 1 cut(s) 48
SatI GCNGC 2 cut(s) 59, 461
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 174
SetI ASST 4 cut(s) 178, 266, 278, 453
SfaNI GCATC 3 cut(s) 15, 208, 424
Sse9I AATT 3 cut(s) 432, 476, 485
SsiI CCGC 2 cut(s) 15, 388
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 235
TasI AATT 3 cut(s) 432, 476, 485
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 58, 460
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 282, 342
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 159
XspI CTAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.