AT5G58260

NAD(P)H-quinone oxidoreductase subunit N, organellar chromatophore-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013396
Physical Location & Seq
Reverse (-)
23560568 .. 23562001
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58260.1

Sequence Viewer

Length: 630 bp
ATGGGAAGCCGTGCAATATGTATACAACGTGTGGCACCACCGTGTTTTGAAGCCTCGCAAGTGAAGAAGATCAAAACAGTTGGTTCCTTTTTGGTGAATACTAGGAGTAAGAGAAGAAGAAGCACTGGTGTGAAATGTAGCAGCATAGCTGACTACATCGGAGGTGACTTGGTGAAGCCGGACATCGGACAATGGCTTCAAGACGTGGAAGAACACAAGGCAATCGCCATTTACGCTCCTCATGAGGGTGGTTACGAAGGTCGTTATCTTAACCGTCTCAAAATGCAGGGCTACTACTTTCTTGACATCTCTGCTCGTGGCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAAGAGTAA

Protein Analysis

209

Amino Acids

23.4

Weight (kDa)

9.43

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NdhN PF11909 64 - 200 3.5e-52 NADH-quinone oxidoreductase cyanobacterial subunit N
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58260 AT5G58260
fragaria_vesca FvH4_3g41140
malus_domestica MD03G1047200.v1.1 MD11G1049700.v1.1
prunus_persica Prupe.6G038400_v2.0.a1
pyrus_communis pycom03g03720 pycom11g04030
rosa_chinensis RchiOBHm_Chr5g0073911
rosa_laevigata RLG00000036424
rosa_multiflora Rmu_sc0000470.1_g000017
rosa_roxburghii Rroxscaffold_1G00007460
rosa_rugosa Rorug05G0427300
rosa_samantha Rh5AG484300 Rh5BG505000 Rh5CG528800 Rh5DG517300
rosa_wichuraiana Rw5G045020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 185, 245
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 3 cut(s) 50, 200, 509
AjiI CACGTC 1 cut(s) 205
AleI CACNNNNGTG 2 cut(s) 40, 128
AluBI AGCT 3 cut(s) 149, 505, 617
AluI AGCT 3 cut(s) 149, 505, 617
Alw26I GTCTC 2 cut(s) 281, 329
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 3 cut(s) 141, 434, 617
ArsI GACNNNNNNTTYG 2 cut(s) 471, 503
AspS9I GGNCC 2 cut(s) 472, 487
AsuHPI GGTGA 4 cut(s) 106, 176, 184, 338
AvaII GGWCC 2 cut(s) 472, 487
BanI GGYRCC 1 cut(s) 34
BauI CACGAG 1 cut(s) 315
BbvI GCAGC 3 cut(s) 153, 421, 604
BccI CCATC 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 281, 329
BfaI CTAG 4 cut(s) 102, 447, 596, 614
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 142, 435, 618
BlsI GCNGC 3 cut(s) 143, 436, 619
Bme18I GGWCC 2 cut(s) 472, 487
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 472, 487
BmiI GGNNCC 3 cut(s) 36, 85, 473
BpmI CTGGAG 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 322, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 245
Bse1I ACTGG 2 cut(s) 130, 575
BseDI CCNNGG 2 cut(s) 322, 453
BseLI CCNNNNNNNGG 2 cut(s) 185, 245
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 130, 575
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 3 cut(s) 153, 421, 604
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 185, 245
BsmAI GTCTC 2 cut(s) 281, 329
BsmBI CGTCTC 1 cut(s) 281
BsnI GGCC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 69
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 325
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 36, 85, 473
BspQI GCTCTTC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 34
BsrI ACTGG 2 cut(s) 130, 575
BssECI CCNNGG 2 cut(s) 322, 453
BssMI GATC 1 cut(s) 69
BssNAI GTATAC 1 cut(s) 23
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 322, 453
Bst1107I GTATAC 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 42, 79, 275
Bst6I CTCTTC 2 cut(s) 444, 537
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 333
BstEII GGTNACC 1 cut(s) 326
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 281, 329
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 3 cut(s) 233, 605, 614
BstPI GGTNACC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 153, 421, 604
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 321
BtrI CACGTC 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 472, 487
CviAII CATG 1 cut(s) 242
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 444, 537
EarI CTCTTC 2 cut(s) 444, 537
Eco130I CCWWGG 2 cut(s) 322, 453
Eco47I GGWCC 2 cut(s) 472, 487
Eco91I GGTNACC 1 cut(s) 326
EcoO109I RGGNCCY 2 cut(s) 472, 487
EcoO65I GGTNACC 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 322, 453
ErhI CCWWGG 2 cut(s) 322, 453
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 1 cut(s) 245
FaiI YATR 6 cut(s) 19, 23, 146, 243, 392, 469
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 142, 435, 618
Fsp4HI GCNGC 3 cut(s) 142, 435, 618
FspBI CTAG 4 cut(s) 102, 447, 596, 614
GluI GCNGC 3 cut(s) 142, 435, 618
GsuI CTGGAG 1 cut(s) 592
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 179
Hin1II CATG 1 cut(s) 245
HpaII CCGG 1 cut(s) 179
HphI GGTGA 4 cut(s) 106, 176, 184, 338
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 3 cut(s) 161, 188, 502
Hpy188III TCNNGA 4 cut(s) 200, 242, 302, 349
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 251, 353
HpyCH4III ACNGT 3 cut(s) 42, 79, 275
HpyCH4IV ACGT 3 cut(s) 28, 204, 543
HpyCH4V TGCA 4 cut(s) 14, 286, 608, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 605, 614
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 3 cut(s) 28, 204, 543
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 69
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 2 cut(s) 241, 502
Lsp1109I GCAGC 3 cut(s) 153, 421, 604
MaeI CTAG 4 cut(s) 102, 447, 596, 614
MaeII ACGT 3 cut(s) 28, 204, 543
MaeIII GTNAC 3 cut(s) 164, 251, 326
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 7 cut(s) 76, 79, 126, 129, 221, 431, 524
MluCI AATT 2 cut(s) 509, 603
MnlI CCTC 8 cut(s) 64, 155, 238, 249, 485, 500, 538, 603
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 3 cut(s) 40, 128, 246
MspI CCGG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 233, 605, 614
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 3 cut(s) 36, 85, 473
NmuCI GTSAC 2 cut(s) 164, 326
OliI CACNNNNGTG 2 cut(s) 40, 128
PagI TCATGA 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 444
PkrI GCNGC 3 cut(s) 143, 436, 619
PpuMI RGGWCCY 2 cut(s) 472, 487
Psp5II RGGWCCY 2 cut(s) 472, 487
PspEI GGTNACC 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 36, 85, 473
PspPI GGNCC 2 cut(s) 472, 487
PspPPI RGGWCCY 2 cut(s) 472, 487
RseI CAYNNNNRTG 3 cut(s) 40, 128, 246
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 142, 435, 618
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 2 cut(s) 472, 487
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 2 cut(s) 472, 487
SmiMI CAYNNNNRTG 3 cut(s) 40, 128, 246
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 509, 603
SspMI CTAG 4 cut(s) 102, 447, 596, 614
StyI CCWWGG 2 cut(s) 322, 453
TaaI ACNGT 3 cut(s) 42, 79, 275
TaiI ACGT 3 cut(s) 31, 207, 546
TaqI TCGA 1 cut(s) 477
TasI AATT 2 cut(s) 509, 603
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 2 cut(s) 164, 326
TseI GCWGC 3 cut(s) 141, 434, 617
Tsp45I GTSAC 2 cut(s) 164, 326
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 472, 487
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 4 cut(s) 102, 447, 596, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.